FC868797

Overview
NameFC868797
Unique NameFC868797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_CHLL2 (Serine hydroxymethyltransferase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=glyA PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.017e-32
Identity = 78/160 (48.75%), Postives = 102/160 (63.75%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L + D E+ + I  E  RQ + LELI SENFTS +VMQA GS+MTNKY+EGYPG RYYGG E++D+AE+L + RA + F        VNVQ  SGS +N  V  ++LKP DRIM LDL HGGHL+HG       ++     F+   Y ++  TG ID ++
Sbjct:    6 LRMQDKEVFEAIAGETLRQTETLELIASENFTSRAVMQACGSLMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCQ----YVNVQPHSGSSANMAVLFSVLKPGDRIMGLDLSHGGHLTHG-----SPVNFSGQLFDAHSYGVDRETGCIDMNR 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_THENN (Serine hydroxymethyltransferase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.328e-32
Identity = 75/157 (47.77%), Postives = 101/157 (64.33%), Query Frame = 1
Query:  226 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            VDPEI +++ +E  RQ  GLELI SENF S++V++ +GSV+TNKY+EGYPG RYYGG E++D AE L  +RA + F  +      NVQ  SGS +N  VY AL +P D IM + L HGGHL+HG       ++     F+ + Y +N  T  IDYD+
Sbjct:    8 VDPEIYEVLVNELRRQEYGLELIASENFASLAVIETMGSVLTNKYAEGYPGRRYYGGCEWVDRAEELAIERAKKLFGAE----FANVQPHSGSQANMAVYLALAQPGDTIMGMSLSHGGHLTHG-----APVNFSGRIFKVVHYGVNLETETIDYDE 155          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SYNY3 (Serine hydroxymethyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.328e-32
Identity = 76/160 (47.50%), Postives = 98/160 (61.25%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L   DP +A II+ E  RQ   +ELI SENFTS +VM A GSV+TNKY+EG PG RYYGG E++D AE+L   R  E F         NVQ  SG+ +NF V+  LL+P D IM +DL HGGHL+HG       ++    +FE   Y + + TG +DYD+
Sbjct:    9 LATSDPALAAIIDRELQRQRTHIELIASENFTSAAVMAAQGSVLTNKYAEGLPGKRYYGGCEFVDQAETLAISRVKELFGAA----HANVQPHSGAQANFAVFLTLLQPGDTIMGMDLSHGGHLTHG-----SPVNVSGKWFEVAHYGVEKETGRLDYDK 159          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SORC5 (Serine hydroxymethyltransferase OS=Sorangium cellulosum (strain So ce56) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.328e-32
Identity = 75/160 (46.88%), Postives = 100/160 (62.50%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L  VDPEIA++I  E+ R+   L LI SEN+ S +V++A GSV+TNKYSEGYP  RYY G + +D+ E L + R  + F  D     VNVQ  SGSP+N  VY A  + +D IM L LP GGHL+HG+      +S    +F+++PY + ES   ID DQ
Sbjct:   13 LNEVDPEIAELIRLEERREADTLRLIASENYVSRAVLEATGSVLTNKYSEGYPHKRYYEGQQQVDVVEELARTRVAKLFGAD----HVNVQPYSGSPANLAVYLAFAQANDTIMGLGLPAGGHLTHGW-----SVSITGKYFKSVPYGVRESDHRIDLDQ 163          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SODGM (Serine hydroxymethyltransferase OS=Sodalis glossinidius (strain morsitans) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.328e-32
Identity = 76/156 (48.72%), Postives = 99/156 (63.46%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D E+   +E E  RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA   F  D      NVQ  SGS +NF VYT LL+P D ++ ++L HGGHL+HG       ++     +  +PY ++ES G+IDYDQ
Sbjct:   12 DAELWHAMEQEVVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKALFGAD----YANVQPHSGSQANFAVYTTLLQPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGIDES-GHIDYDQ 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_PELTS (Serine hydroxymethyltransferase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.328e-32
Identity = 80/164 (48.78%), Postives = 100/164 (60.98%), Query Frame = 1
Query:  205 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L  PL  VDPEI   IE E  RQ   LELI SEN  S +VM+A GSV+TNKY+EGYPG RYYGG E++D+AE L   RA E F         NVQ  SG+ +N  VY ALL P D IM +DL HGGHL+HG       ++    +F+   Y + + TG I+Y++
Sbjct:    3 LKRPLSEVDPEIFRAIELETQRQRNTLELIASENVASRAVMEAQGSVLTNKYAEGYPGRRYYGGCEFVDIAEDLAISRAKELFGAG----FANVQPHSGAQANTAVYFALLNPGDTIMGMDLAHGGHLTHG-----SPVNISGRYFKFTFYGVEKETGRINYEK 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_NOSP7 (Serine hydroxymethyltransferase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.328e-32
Identity = 76/160 (47.50%), Postives = 99/160 (61.88%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L   DP IA++I  E  RQ   LELI SENFTS +V+ A GSV+TNKY+EG PG RYYGG EYID  E L   RA + F         NVQ  SG+ +NF V+ +LL+P D+IM +DL HGGHL+HG       ++    +F+   Y +++ T  +DYDQ
Sbjct:    9 LSSTDPAIAELINDELQRQRDHLELIASENFTSAAVLAAQGSVLTNKYAEGLPGKRYYGGCEYIDKIEQLAINRAKQIFGAA----HANVQPHSGAQANFAVFLSLLQPGDKIMGMDLSHGGHLTHG-----SPVNVSGKWFQVSHYGVSQQTEQLDYDQ 159          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_ANASP (Serine hydroxymethyltransferase OS=Anabaena sp. (strain PCC 7120) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.328e-32
Identity = 75/156 (48.08%), Postives = 97/156 (62.18%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DP IA +I  E  RQ   LELI SENFTS +V+ A GSV+TNKY+EG PG RYYGG E+ID  E +   RA + F  D      NVQ  SG+ +NF V+  LLKP D+IM +DL HGGHL+HG       ++    +F+   Y +++ T  +DYDQ
Sbjct:   13 DPAIAGLINQELQRQRDHLELIASENFTSAAVLAAQGSVLTNKYAEGLPGKRYYGGCEFIDKIEQIAIDRAKQLFGAD----HANVQPHSGAQANFAVFLTLLKPGDKIMGMDLSHGGHLTHG-----SPVNVSGKWFQVCHYGVSQQTEQLDYDQ 159          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_STRAW (Serine hydroxymethyltransferase OS=Streptomyces avermitilis GN=glyA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.734e-32
Identity = 74/161 (45.96%), Postives = 100/161 (62.11%), Query Frame = 1
Query:  205 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYID 687
            LN PL  +DP++A  ++ E  RQ   LE+I SENF  V+VM+A GSV+TNKY+EGYPG RYYGG E++D+ E +   R  E F  +      NVQ  SG+ +N     ALLKP D IM L+L HGGHL+HG      KI+     +  + Y ++E+TG +D
Sbjct:    4 LNTPLHELDPDVAAAVDAELNRQQSTLEMIASENFAPVAVMEAQGSVLTNKYAEGYPGRRYYGGCEHVDVVEQIAIDRVKELFGAE----HANVQPHSGAQANAAAMFALLKPGDTIMGLNLAHGGHLTHG-----MKINFSGKLYNVVAYHVDETTGQVD 155          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SALRD (Serine hydroxymethyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.734e-32
Identity = 76/156 (48.72%), Postives = 99/156 (63.46%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPEI D+I+ E  RQ  GLELI SENF S +VM+A+G+ +TNKY+EG PG RYYGG E +D AE L ++RA E +  D   W VNVQ  +G+ +N  VY  LL P D  + LDL HGGHL+HG       ++   I +E   Y + E TG ID ++
Sbjct:    8 DPEIHDVIQKEVQRQNDGLELIASENFASRAVMEAMGTALTNKYAEGLPGKRYYGGCEVVDRAEELARERAKELYDCD---W-VNVQPHAGAQANSAVYLTLLDPGDTFLGLDLSHGGHLTHG-----SPVNFSGILYEAEYYGVEEETGRIDMNR 154          
The following BLAST results are available for this feature:
BLAST of FC868797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CHLL21.017e-3248.75Serine hydroxymethyltransferase OS=Chlorobium limi... [more]
GLYA_THENN1.328e-3247.77Serine hydroxymethyltransferase OS=Thermotoga neap... [more]
GLYA_SYNY31.328e-3247.50Serine hydroxymethyltransferase OS=Synechocystis s... [more]
GLYA_SORC51.328e-3246.88Serine hydroxymethyltransferase OS=Sorangium cellu... [more]
GLYA_SODGM1.328e-3248.72Serine hydroxymethyltransferase OS=Sodalis glossin... [more]
GLYA_PELTS1.328e-3248.78Serine hydroxymethyltransferase OS=Pelotomaculum t... [more]
GLYA_NOSP71.328e-3247.50Serine hydroxymethyltransferase OS=Nostoc punctifo... [more]
GLYA_ANASP1.328e-3248.08Serine hydroxymethyltransferase OS=Anabaena sp. (s... [more]
GLYA_STRAW1.734e-3245.96Serine hydroxymethyltransferase OS=Streptomyces av... [more]
GLYA_SALRD1.734e-3248.72Serine hydroxymethyltransferase OS=Salinibacter ru... [more]

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Properties
Property NameValue
Genbank descriptionC31004H06EF AbioticL1 Citrus clementina cDNA clone C31004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868797 ID=FC868797; Name=FC868797; organism=Citrus clementina; type=EST; length=697bp
AACAAAGAAGAAACAGAACAACATCTTGCAGCGGGAGAGTGAGAAGCAAA
AATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCCTCGACAAAC
CCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATGTCATCTTTG
CCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCACTTGGCCAAA
ACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTGCTGACATTA
TCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTCATTCCTTCA
GAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGAC
CAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACG
AGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCA
TTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGG
ATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATA
GGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTAT
CAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAAT
GCCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGT
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