FC868797

Overview
NameFC868797
Unique NameFC868797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_PROVI (Serine hydroxymethyltransferase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.734e-32
Identity = 78/160 (48.75%), Postives = 103/160 (64.38%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L++ D E+ + I  E  RQ + LELI SENFTS +VMQA GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F  +     VNVQ  SGS +N  V  ++LKP D IM LDL HGGHL+HG       ++     ++   Y ++  TG ID +Q
Sbjct:    6 LKMQDREVFEAIALETGRQMETLELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCE----YVNVQPHSGSSANMAVLFSVLKPGDCIMGLDLSHGGHLTHG-----SSVNFSGQMYKAHAYGVDGETGIIDMNQ 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_MYCA5 (Serine hydroxymethyltransferase OS=Mycoplasma arthritidis (strain 158L3-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.734e-32
Identity = 74/164 (45.12%), Postives = 102/164 (62.20%), Query Frame = 1
Query:  205 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            +N  + + D +IAD+I  E  RQ + +ELI SEN+ S  VM+A GS +TNKY EGYPG RYYGG E++D  E + Q+RA + F         NVQ  SGS +N  +Y ALL P D ++ L L  GGHL+HGY     +IS   IF+++  Y +N+  G +DYD+
Sbjct:    1 MNKKVTLHDQDIADLINKESHRQEEHIELIASENYVSEDVMKAAGSSLTNKYGEGYPGKRYYGGCEFVDEIEKIAQERACKLFNAK----YANVQPYSGSVANAAIYMALLNPGDSVLGLSLDSGGHLTHGY-----RISFSGIFYKSYTYTVNQD-GVLDYDE 154          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_METHJ (Serine hydroxymethyltransferase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=glyA PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.734e-32
Identity = 76/158 (48.10%), Postives = 100/158 (63.29%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDY 690
            LE  DPEIA II+ E  RQ  GLELI SEN  S +V++A GS+MTNKY+EGYPG RYYGG E+ DMAE+L + R    F  +      NVQ  SGS +N  VY  +LKP D+I++++L  GGHLSHG       ++   I +E+  Y ++  T  +DY
Sbjct:    4 LETTDPEIAAIIDKETNRQINGLELIASENVVSRAVLEASGSIMTNKYAEGYPGKRYYGGCEFHDMAENLARDRVCSLFGAE----HANVQPHSGSQANMAVYFTVLKPSDKILSMNLSQGGHLSHG-----SPVNFSGIIYESHQYGVDLKTERMDY 152          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_METCA (Serine hydroxymethyltransferase OS=Methylococcus capsulatus GN=glyA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.734e-32
Identity = 75/156 (48.08%), Postives = 97/156 (62.18%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D E+   I+ E+ RQ   +ELI SEN+ S  V+QA G+V+TNKY+EGYPG RYYGG EY+D+ E+L  +RA   F  D      NVQ  SGS +N  VY ALLKP D ++ + L HGGHL+HG      K++     +  + Y LN  TG IDYDQ
Sbjct:   12 DDELWAAIQEEERRQEDHIELIASENYASPRVLQAQGTVLTNKYAEGYPGKRYYGGCEYVDIVETLAIERAKRLFGAD----YANVQPHSGSQANAAVYMALLKPGDTVLGMSLAHGGHLTHG-----AKVNFSGKIYNAVQYGLNPETGEIDYDQ 158          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_HALHL (Serine hydroxymethyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.734e-32
Identity = 77/156 (49.36%), Postives = 99/156 (63.46%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPE+A  IE E+ RQ   +ELI SEN+ S  VM+A GSV+TNKY+EGYPG RYYGG E++D+AE L   RA + F  D      NVQ  SGS +N  V+ ALLKP D I+ + L HGGHL+HG      K++     F  + Y +N+  G IDYD+
Sbjct:   12 DPELAAAIEDERQRQEDHIELIASENYASPRVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVAEQLAIDRAKQLFGAD----YANVQPHSGSQANAAVFHALLKPGDTILGMSLDHGGHLTHG-----AKVNFSGKLFNAVQYGINDD-GQIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_CITK8 (Serine hydroxymethyltransferase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=glyA PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.734e-32
Identity = 76/156 (48.72%), Postives = 100/156 (64.10%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L  GGHL+HG       ++     +  +PY ++ES G IDY++
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHG-----SPVNFSGKLYNIVPYGIDES-GKIDYEE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA1_ERWCT (Serine hydroxymethyltransferase 1 OS=Erwinia carotovora subsp. atroseptica GN=glyA1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.734e-32
Identity = 76/156 (48.72%), Postives = 100/156 (64.10%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D ++   +E E  RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA   F  D      NVQ  SGS +NF VYTALL+P D I+ ++L HGGHL+HG       ++     ++ +PY ++ES G IDYD+
Sbjct:   12 DADLWQAMEQEVVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKALFGAD----YANVQPHSGSQANFAVYTALLQPGDTILGMNLAHGGHLTHG-----SPVNLSGKLYKVIPYGIDES-GKIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SYNS9 (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain CC9902) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.265e-32
Identity = 77/165 (46.67%), Postives = 104/165 (63.03%), Query Frame = 1
Query:  199 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            + +NA L   DPEI+ +I+ E+ RQ   LELI SENF S +VMQA GSV+TNKY+EG P  RYYGG E++D  E+L  +RA + F      W  NVQ  SG+ +NF V+ ALLKP D IM LDL HGGHL+HG       ++    +F  + Y ++ +T  +D +
Sbjct:    7 RAINAGLASADPEISRLIDQERHRQETHLELIASENFASQAVMQAQGSVLTNKYAEGLPAKRYYGGCEHVDAIETLAIERAKQLF---DAAW-ANVQPHSGAQANFAVFLALLKPGDTIMGLDLSHGGHLTHG-----SPVNVSGKWFNVVQYGVDPTTQRLDME 162          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_STRMK (Serine hydroxymethyltransferase OS=Stenotrophomonas maltophilia (strain K279a) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.265e-32
Identity = 78/160 (48.75%), Postives = 100/160 (62.50%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            +E  DPE+A  I  E  RQ   +ELI SEN+TS +VM+A GS +TNKY+EGYPG RYYGG EY+D+AE L   R  + F  D      NVQ  SGS +N  VY ALL+P D I+ + L HGGHL+HG      K++A    F  + Y +N+  G IDYD+
Sbjct:    8 IESYDPELAKAIAAETQRQEDHVELIASENYTSPAVMEAQGSQLTNKYAEGYPGKRYYGGCEYVDIAEQLAIDRLKQLFGAD----YANVQPHSGSQANQAVYFALLQPGDTILGMSLAHGGHLTHG-----AKVNASGKLFNAVQYGVNDQ-GLIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_STRM5 (Serine hydroxymethyltransferase OS=Stenotrophomonas maltophilia (strain R551-3) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.265e-32
Identity = 78/160 (48.75%), Postives = 100/160 (62.50%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            +E  DPE+A  I  E  RQ   +ELI SEN+TS +VM+A GS +TNKY+EGYPG RYYGG EY+D+AE L   R  + F  D      NVQ  SGS +N  VY ALL+P D I+ + L HGGHL+HG      K++A    F  + Y +N+  G IDYD+
Sbjct:    8 IESYDPELAKAIAAETQRQEDHVELIASENYTSPAVMEAQGSQLTNKYAEGYPGKRYYGGCEYVDIAEQLAIDRLKQLFGAD----YANVQPHSGSQANQAVYFALLQPGDTILGMSLAHGGHLTHG-----AKVNASGKLFNAVQYGVNDQ-GLIDYDE 157          
The following BLAST results are available for this feature:
BLAST of FC868797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PROVI1.734e-3248.75Serine hydroxymethyltransferase OS=Prosthecochlori... [more]
GLYA_MYCA51.734e-3245.12Serine hydroxymethyltransferase OS=Mycoplasma arth... [more]
GLYA_METHJ1.734e-3248.10Serine hydroxymethyltransferase OS=Methanospirillu... [more]
GLYA_METCA1.734e-3248.08Serine hydroxymethyltransferase OS=Methylococcus c... [more]
GLYA_HALHL1.734e-3249.36Serine hydroxymethyltransferase OS=Halorhodospira ... [more]
GLYA_CITK81.734e-3248.72Serine hydroxymethyltransferase OS=Citrobacter kos... [more]
GLYA1_ERWCT1.734e-3248.72Serine hydroxymethyltransferase 1 OS=Erwinia carot... [more]
GLYA_SYNS92.265e-3246.67Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_STRMK2.265e-3248.75Serine hydroxymethyltransferase OS=Stenotrophomona... [more]
GLYA_STRM52.265e-3248.75Serine hydroxymethyltransferase OS=Stenotrophomona... [more]

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Properties
Property NameValue
Genbank descriptionC31004H06EF AbioticL1 Citrus clementina cDNA clone C31004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868797 ID=FC868797; Name=FC868797; organism=Citrus clementina; type=EST; length=697bp
AACAAAGAAGAAACAGAACAACATCTTGCAGCGGGAGAGTGAGAAGCAAA
AATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCCTCGACAAAC
CCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATGTCATCTTTG
CCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCACTTGGCCAAA
ACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTGCTGACATTA
TCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTCATTCCTTCA
GAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGAC
CAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACG
AGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCA
TTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGG
ATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATA
GGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTAT
CAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAAT
GCCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGT
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