FC868797

Overview
NameFC868797
Unique NameFC868797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SHESR (Serine hydroxymethyltransferase OS=Shewanella sp. (strain MR-7) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.265e-32
Identity = 75/156 (48.08%), Postives = 102/156 (65.38%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPE+ + I++E  RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E+L  +RA + F         NVQ  SGS +N  VY ALLKP D ++ ++L HGGHL+HG       ++     +  +PY ++ES G IDYD+
Sbjct:   12 DPELFNAIQNETLRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVETLAIERAKQLFGAT----YANVQPHSGSQANSAVYMALLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGRLYNIIPYGIDES-GKIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SHESM (Serine hydroxymethyltransferase OS=Shewanella sp. (strain MR-4) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.265e-32
Identity = 75/156 (48.08%), Postives = 102/156 (65.38%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPE+ + I++E  RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E+L  +RA + F         NVQ  SGS +N  VY ALLKP D ++ ++L HGGHL+HG       ++     +  +PY ++ES G IDYD+
Sbjct:   12 DPELFNAIQNETLRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVETLAIERAKQLFGAT----YANVQPHSGSQANSAVYMALLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGRLYNIIPYGIDES-GKIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SHESA (Serine hydroxymethyltransferase OS=Shewanella sp. (strain ANA-3) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.265e-32
Identity = 75/156 (48.08%), Postives = 102/156 (65.38%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPE+ + I++E  RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E+L  +RA + F         NVQ  SGS +N  VY ALLKP D ++ ++L HGGHL+HG       ++     +  +PY ++ES G IDYD+
Sbjct:   12 DPELFNAIQNETLRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVETLAIERAKQLFGAT----YANVQPHSGSQANSAVYMALLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGRLYNIIPYGIDES-GKIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SHEON (Serine hydroxymethyltransferase OS=Shewanella oneidensis GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.265e-32
Identity = 75/156 (48.08%), Postives = 102/156 (65.38%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPE+ + I++E  RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E+L  +RA + F         NVQ  SGS +N  VY ALLKP D ++ ++L HGGHL+HG       ++     +  +PY ++ES G IDYD+
Sbjct:   12 DPELFNAIQNETLRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVETLAIERAKQLFGAT----YANVQPHSGSQANSAVYMALLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGRLYNIIPYGIDES-GKIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SHEB2 (Serine hydroxymethyltransferase OS=Shewanella baltica (strain OS223) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.265e-32
Identity = 75/156 (48.08%), Postives = 102/156 (65.38%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPE+ + I++E  RQ + +ELI SEN+TS  VM+A GS +TNKY+EGYPG RYYGG EY+D+ E+L  +RA E F         NVQ  SGS +N  VY ALLKP D ++ ++L HGGHL+HG       ++     +  +PY ++ES G IDYD+
Sbjct:   12 DPELFNAIQNETLRQEEHIELIASENYTSPRVMEAQGSQLTNKYAEGYPGKRYYGGCEYVDVVETLAIERAKELFGAT----YANVQPHSGSQANSAVYMALLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIIPYGIDES-GKIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_HALMA (Serine hydroxymethyltransferase OS=Haloarcula marismortui GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.265e-32
Identity = 74/155 (47.74%), Postives = 97/155 (62.58%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            DP +AD +E E+ RQ   L +I SEN  S +VM+A  S +TNKY+EGYPG RYYGG EY D  E L   RA E +  D     VNVQ  SGS +N  VY  +L+P D+I++LDL HGGHLSHG+       +     +E   Y+++E TGY+DY+
Sbjct:   10 DPAVADALEGERGRQNDTLAMIASENHVSEAVMEAQSSELTNKYAEGYPGERYYGGCEYADDVEELAIDRAKELWGAD----HVNVQPHSGSQANMGVYLGVLEPGDKILSLDLTHGGHLSHGHPA-----NFAGQVYEVEQYKVDEETGYVDYE 155          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_GEOLS (Serine hydroxymethyltransferase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.265e-32
Identity = 72/160 (45.00%), Postives = 101/160 (63.12%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L   DP +A+ I+HE  RQ   LELI SENF S +V++A GSVMTNKY+EGYPG RYYGG  ++D+ E+L  +RA E F  +      NVQ  +GS +N  VY A+ +P D I+ ++L HGGHL+HG       ++    F+  +PY ++  T  IDY++
Sbjct:    4 LSQFDPAVAEAIQHETERQEYNLELIASENFVSEAVLEAQGSVMTNKYAEGYPGKRYYGGCHHVDVVENLAIERAKELFGAE----HANVQPHAGSQANMAVYNAVCQPGDTILGMNLSHGGHLTHG-----SPVNFSGRFYNVVPYGVSPDTETIDYNE 154          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_CLOPH (Serine hydroxymethyltransferase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.265e-32
Identity = 74/160 (46.25%), Postives = 107/160 (66.88%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            ++V DPE+AD I  E ARQ   +ELI SENF S +VM A+GS +TNKY+EGYPG RYYGG E++D+AE+L  +RA + F         NVQ  SG+ +N  V+ ALL+P D +M ++L HGGHL+HG       ++    +F  +PY ++++ G+IDY++
Sbjct:    7 IKVFDPELADSITMEIARQNDHIELIASENFVSKAVMAAMGSPLTNKYAEGYPGKRYYGGCEFVDIAENLAIERAKKLFGCT----YANVQPHSGAQANMAVFFALLQPGDTVMGMNLAHGGHLTHG-----SPVNFSGSYFNIVPYGVDDN-GFIDYEE 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_WOLSU (Serine hydroxymethyltransferase OS=Wolinella succinogenes GN=glyA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.958e-32
Identity = 77/164 (46.95%), Postives = 104/164 (63.41%), Query Frame = 1
Query:  205 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            +N  LE  D EI D+I  E  RQ   LE+I SENFT  +VM+A+GSV+TNKY+EGYP  RYYGG E++D  E +  +RA + F         NVQ  +GS +N  VY ALLKP+D+I+ +DL HGGHL+HG      K+S     +++  Y + E  GYI+YD+
Sbjct:    1 MNYALETNDKEIFDLIHEELDRQNTHLEMIASENFTFPAVMEAMGSVLTNKYAEGYPYKRYYGGCEFVDRVEEIAIERAKKLFGCG----FANVQPHAGSQANVAVYNALLKPYDKILGMDLSHGGHLTHG-----AKVSVTGQTYQSFFYGV-ELDGYINYDK 154          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SHEB8 (Serine hydroxymethyltransferase OS=Shewanella baltica (strain OS185) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.958e-32
Identity = 75/156 (48.08%), Postives = 101/156 (64.74%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPE+   I++E  RQ + +ELI SEN+TS  VM+A GS +TNKY+EGYPG RYYGG EY+D+ E+L  +RA E F         NVQ  SGS +N  VY ALLKP D ++ ++L HGGHL+HG       ++     +  +PY ++ES G IDYD+
Sbjct:   12 DPELFKAIQNETLRQEEHIELIASENYTSPRVMEAQGSQLTNKYAEGYPGKRYYGGCEYVDVVETLAIERAKELF----SATYANVQPHSGSQANSAVYMALLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIIPYGIDES-GKIDYDE 157          
The following BLAST results are available for this feature:
BLAST of FC868797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_SHESR2.265e-3248.08Serine hydroxymethyltransferase OS=Shewanella sp. ... [more]
GLYA_SHESM2.265e-3248.08Serine hydroxymethyltransferase OS=Shewanella sp. ... [more]
GLYA_SHESA2.265e-3248.08Serine hydroxymethyltransferase OS=Shewanella sp. ... [more]
GLYA_SHEON2.265e-3248.08Serine hydroxymethyltransferase OS=Shewanella onei... [more]
GLYA_SHEB22.265e-3248.08Serine hydroxymethyltransferase OS=Shewanella balt... [more]
GLYA_HALMA2.265e-3247.74Serine hydroxymethyltransferase OS=Haloarcula mari... [more]
GLYA_GEOLS2.265e-3245.00Serine hydroxymethyltransferase OS=Geobacter lovle... [more]
GLYA_CLOPH2.265e-3246.25Serine hydroxymethyltransferase OS=Clostridium phy... [more]
GLYA_WOLSU2.958e-3246.95Serine hydroxymethyltransferase OS=Wolinella succi... [more]
GLYA_SHEB82.958e-3248.08Serine hydroxymethyltransferase OS=Shewanella balt... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31004H06EF AbioticL1 Citrus clementina cDNA clone C31004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868797 ID=FC868797; Name=FC868797; organism=Citrus clementina; type=EST; length=697bp
AACAAAGAAGAAACAGAACAACATCTTGCAGCGGGAGAGTGAGAAGCAAA
AATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCCTCGACAAAC
CCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATGTCATCTTTG
CCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCACTTGGCCAAA
ACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTGCTGACATTA
TCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTCATTCCTTCA
GAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGAC
CAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACG
AGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCA
TTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGG
ATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATA
GGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTAT
CAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAAT
GCCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGT
back to top