FC868797

Overview
NameFC868797
Unique NameFC868797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_PELCD (Serine hydroxymethyltransferase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.958e-32
Identity = 74/156 (47.44%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPEIA+ I  E  RQ   LE I SENF S  VM+A GS+MTNKY+EGYP  RYYGG E +D+AE L  +RA E F  +      NVQ+ SGS +N  VY A  KP D ++ ++L HGGHL+HG       ++     F  + Y + + TGYIDY++
Sbjct:    9 DPEIAEAIRLETERQEYNLEFIASENFVSEQVMEAQGSIMTNKYAEGYPAKRYYGGCEMVDIAERLAIERAKELFGAE----HANVQAHSGSQANMAVYFAACKPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLFNIVSYGVQKETGYIDYEE 155          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_KOCRD (Serine hydroxymethyltransferase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.958e-32
Identity = 75/163 (46.01%), Postives = 98/163 (60.12%), Query Frame = 1
Query:  208 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            N PL  VDP++A  I+ E  RQ   LE+I SENF   +V++A GSV+TNKY+EGYPG RYYGG EY+D+ E+L + RA E F  D      NVQ  SG+ +N  V  AL++P D +M L L HGGHL+HG      KI+     +    Y +   T  ID D+
Sbjct:    7 NQPLSDVDPDVAQAIQDELGRQRSTLEMIASENFAPRAVLEAQGSVLTNKYAEGYPGRRYYGGCEYVDVVENLARDRACELFGAD----HANVQPHSGAQANTAVMAALMQPGDTLMGLSLAHGGHLTHG-----MKINVSGKLYNIAAYEVEPETYRIDMDR 160          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_HALLT (Serine hydroxymethyltransferase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.958e-32
Identity = 75/156 (48.08%), Postives = 99/156 (63.46%), Query Frame = 1
Query:  226 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            VDPE+AD +  E+ RQ + L +I SEN  S +V++A GSV+TNKY+EGYPG RYY G EY D  E+L   RA E +  D     VNVQ  SG+ +N  VY A+L P D+I++LDL HGGHLSHG+       +     +E   Y ++  TGYIDY+
Sbjct:    9 VDPEVADALAGERDRQEQTLAMIASENHVSEAVLEAQGSVLTNKYAEGYPGERYYAGCEYADEVETLAIDRAKELWGAD----HVNVQPHSGTQANQAVYYAVLDPGDKILSLDLNHGGHLSHGHPA-----NFTGQIYEVEQYEVDADTGYIDYE 155          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_ENTS8 (Serine hydroxymethyltransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=glyA PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.958e-32
Identity = 76/155 (49.03%), Postives = 99/155 (63.87%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L  GGHL+HG       ++     +  +PY ++ES G IDY+
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHG-----SPVNFSGKLYNIIPYGIDES-GKIDYE 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_ENT38 (Serine hydroxymethyltransferase OS=Enterobacter sp. (strain 638) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.958e-32
Identity = 76/155 (49.03%), Postives = 99/155 (63.87%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L  GGHL+HG       ++     +  +PY ++ES G IDY+
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHG-----SPVNFSGKLYNIIPYGIDES-GKIDYE 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SHEB9 (Serine hydroxymethyltransferase OS=Shewanella baltica (strain OS195) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 75/156 (48.08%), Postives = 101/156 (64.74%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPE+   I++E  RQ + +ELI SEN+TS  VM+A GS +TNKY+EGYPG RYYGG EY+D+ E+L  +RA E F         NVQ  SGS +N  VY ALLKP D ++ ++L HGGHL+HG       ++     +  +PY ++ES G IDYD+
Sbjct:   12 DPELFKAIQNETLRQEEHIELIASENYTSPRVMEAQGSQLTNKYAEGYPGKRYYGGCEYVDVVETLAIERAKELFGAT----YANVQPHSGSQANSAVYMALLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIIPYGIDES-GKIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SHEB5 (Serine hydroxymethyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 75/156 (48.08%), Postives = 101/156 (64.74%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPE+   I++E  RQ + +ELI SEN+TS  VM+A GS +TNKY+EGYPG RYYGG EY+D+ E+L  +RA E F         NVQ  SGS +N  VY ALLKP D ++ ++L HGGHL+HG       ++     +  +PY ++ES G IDYD+
Sbjct:   12 DPELFKAIQNETLRQEEHIELIASENYTSPRVMEAQGSQLTNKYAEGYPGKRYYGGCEYVDVVETLAIERAKELFGAT----YANVQPHSGSQANSAVYMALLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIIPYGIDES-GKIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SERP5 (Serine hydroxymethyltransferase OS=Serratia proteamaculans (strain 568) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 76/155 (49.03%), Postives = 98/155 (63.23%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            D E+   +E E  RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D I+ ++L HGGHL+HG       ++     +  +PY ++E  G IDY+
Sbjct:   12 DAELWRAMEQEVVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLQPGDTILGMNLAHGGHLTHG-----SPVNLSGKLYNVVPYGIDEK-GQIDYE 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_PROM4 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9211) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 73/163 (44.79%), Postives = 106/163 (65.03%), Query Frame = 1
Query:  205 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            +N+ LE  DP IA +I+ E  RQ   LELI SENFTS +VM+A GSV+TNKY+EG P  RYYGG E+ID  E L  +RA + F+ +   W  NVQ  SG+ +NF V+ +LL+P ++IM +DL HGGHL+HG       ++    +F+ + Y +++ T  ++ +
Sbjct:    4 INSALEDADPNIASLIQEESKRQENHLELIASENFTSKAVMEAQGSVLTNKYAEGLPNKRYYGGCEHIDKIEGLAIERAKQLFKAE---W-ANVQPHSGAQANFSVFLSLLEPGEKIMGMDLSHGGHLTHG-----SPVNVSGKWFKAIHYGVDKETQRLEME 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_PELPD (Serine hydroxymethyltransferase OS=Pelobacter propionicus (strain DSM 2379) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 76/158 (48.10%), Postives = 99/158 (62.66%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDY 690
            L  +DPE+AD I  E  RQ   LELI SENF S +V++A GSV+TNKY+EGYPG RYYGG   +D+ E+L  +RA + F  D E    NVQ  SGS +N  VY + LKP D I+ ++L HGGHL+HG       ++    FF  +PY ++  T  IDY
Sbjct:    4 LSTLDPEVADAIRLEADRQEYNLELIASENFVSTAVLEAQGSVLTNKYAEGYPGKRYYGGCHNVDIVEALAIERAKQLF--DAEH--ANVQPHSGSQANMAVYFSALKPGDTILGMNLSHGGHLTHG-----SPVNFSGRFFNVVPYGVSPETQTIDY 152          
The following BLAST results are available for this feature:
BLAST of FC868797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PELCD2.958e-3247.44Serine hydroxymethyltransferase OS=Pelobacter carb... [more]
GLYA_KOCRD2.958e-3246.01Serine hydroxymethyltransferase OS=Kocuria rhizoph... [more]
GLYA_HALLT2.958e-3248.08Serine hydroxymethyltransferase OS=Halorubrum lacu... [more]
GLYA_ENTS82.958e-3249.03Serine hydroxymethyltransferase OS=Enterobacter sa... [more]
GLYA_ENT382.958e-3249.03Serine hydroxymethyltransferase OS=Enterobacter sp... [more]
GLYA_SHEB93.864e-3248.08Serine hydroxymethyltransferase OS=Shewanella balt... [more]
GLYA_SHEB53.864e-3248.08Serine hydroxymethyltransferase OS=Shewanella balt... [more]
GLYA_SERP53.864e-3249.03Serine hydroxymethyltransferase OS=Serratia protea... [more]
GLYA_PROM43.864e-3244.79Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_PELPD3.864e-3248.10Serine hydroxymethyltransferase OS=Pelobacter prop... [more]

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Properties
Property NameValue
Genbank descriptionC31004H06EF AbioticL1 Citrus clementina cDNA clone C31004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868797 ID=FC868797; Name=FC868797; organism=Citrus clementina; type=EST; length=697bp
AACAAAGAAGAAACAGAACAACATCTTGCAGCGGGAGAGTGAGAAGCAAA
AATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCCTCGACAAAC
CCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATGTCATCTTTG
CCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCACTTGGCCAAA
ACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTGCTGACATTA
TCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTCATTCCTTCA
GAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGAC
CAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACG
AGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCA
TTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGG
ATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATA
GGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTAT
CAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAAT
GCCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGT
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