FC868797

Overview
NameFC868797
Unique NameFC868797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_METMA (Serine hydroxymethyltransferase OS=Methanosarcina mazei GN=glyA PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 73/160 (45.62%), Postives = 104/160 (65.00%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            +E +DPE+ + I++E  RQ   L LI SEN+ S +VM+A GS+MTNKY+EGY G RYYGG +++D+AE+L   RA E F        VNVQ  SGS +N  VY ++L+P D I+++DL HGGHLSHG       +S     +  +PY +++ T  +DYD+
Sbjct:    4 IEKIDPELFEAIKNEADRQEHKLNLIASENYASRAVMEAQGSIMTNKYAEGYSGKRYYGGCDFVDVAENLAIARAKELFGAK----YVNVQPHSGSGANMAVYFSVLQPGDTILSMDLSHGGHLSHG-----SPVSFSGKLYNIVPYGVSKETEALDYDE 154          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 75/156 (48.08%), Postives = 100/156 (64.10%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPEIA  I  E  RQ   +ELI SEN+ S +VM A+GS++TNKY+EGYPG RYYGG E +D  E L ++RA E F  +     VNVQ  SG+ +N  V  A+LKP D IM ++L HGGHL+HG       ++    +F  +PY +N+  G+IDYD+
Sbjct:   11 DPEIASAITDEFERQNSHIELIASENWVSPAVMSAMGSILTNKYAEGYPGRRYYGGCECVDEVEELARERAKELFGAE----YVNVQPHSGAQANMAVQFAILKPGDTIMGMNLDHGGHLTHG-----SPVNFSGSYFHVVPYGVNDE-GFIDYDK 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA4_COLP3 (Serine hydroxymethyltransferase 4 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=glyA4 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 76/156 (48.72%), Postives = 95/156 (60.90%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D  I   +E E  RQ   +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG E++D+ E L   RA E F  D      NVQ  SGS +N  V+ ALLKP + ++ + L HGGHL+HG      K+S     +  + Y LNE TG IDYD+
Sbjct:   12 DDSIWQAMEQEDKRQQDHVELIASENYTSARVMQAQGSQLTNKYAEGYPGKRYYGGCEHVDVIEQLAIDRAKELFGAD----YANVQPHSGSQANAAVFMALLKPGETVLGMSLAHGGHLTHG-----SKVSFSGKIYNAVQYGLNEVTGEIDYDE 158          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_XANCP (Serine hydroxymethyltransferase OS=Xanthomonas campestris pv. campestris GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.046e-32
Identity = 78/160 (48.75%), Postives = 98/160 (61.25%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            LE  DPE+A  I  E  RQ   +ELI SEN+ S  VM+A GS +TNKY+EGYPG RYYGG E++D+AE L   R  + F  D      NVQ  SGS +N  VY ALL+P D I+ + L HGGHL+HG      K++A    F  + Y +NE  G IDYD+
Sbjct:    8 LETYDPELAKAIAAEAGRQEDHVELIASENYCSPLVMEAQGSQLTNKYAEGYPGKRYYGGCEFVDIAEQLAIDRIKQVFGAD----YANVQPHSGSQANQAVYLALLQPGDTILGMSLAHGGHLTHG-----AKVNASGKLFNAVQYGVNEQ-GLIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_XANCB (Serine hydroxymethyltransferase OS=Xanthomonas campestris pv. campestris (strain B100) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.046e-32
Identity = 78/160 (48.75%), Postives = 98/160 (61.25%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            LE  DPE+A  I  E  RQ   +ELI SEN+ S  VM+A GS +TNKY+EGYPG RYYGG E++D+AE L   R  + F  D      NVQ  SGS +N  VY ALL+P D I+ + L HGGHL+HG      K++A    F  + Y +NE  G IDYD+
Sbjct:    8 LETYDPELAKAIAAEAGRQEDHVELIASENYCSPLVMEAQGSQLTNKYAEGYPGKRYYGGCEFVDIAEQLAIDRIKQVFGAD----YANVQPHSGSQANQAVYLALLQPGDTILGMSLAHGGHLTHG-----AKVNASGKLFNAVQYGVNEQ-GLIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_XANC8 (Serine hydroxymethyltransferase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.046e-32
Identity = 78/160 (48.75%), Postives = 98/160 (61.25%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            LE  DPE+A  I  E  RQ   +ELI SEN+ S  VM+A GS +TNKY+EGYPG RYYGG E++D+AE L   R  + F  D      NVQ  SGS +N  VY ALL+P D I+ + L HGGHL+HG      K++A    F  + Y +NE  G IDYD+
Sbjct:    8 LETYDPELAKAIAAEAGRQEDHVELIASENYCSPLVMEAQGSQLTNKYAEGYPGKRYYGGCEFVDIAEQLAIDRIKQVFGAD----YANVQPHSGSQANQAVYLALLQPGDTILGMSLAHGGHLTHG-----AKVNASGKLFNAVQYGVNEQ-GLIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SHEPC (Serine hydroxymethyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.046e-32
Identity = 74/156 (47.44%), Postives = 102/156 (65.38%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPE+ + I++E  RQ + +ELI SEN+TS  VM+A GS +TNKY+EGYPG RYYGG EY+D+ E+L  +RA + F         NVQ  SGS +N  VY ALLKP D ++ ++L HGGHL+HG       ++     +  +PY ++ES G IDYD+
Sbjct:   12 DPELFNAIQNETLRQEEHIELIASENYTSPRVMEAQGSQLTNKYAEGYPGKRYYGGCEYVDVVETLAIERAKQLFGAT----YANVQPHSGSQANSAVYMALLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIIPYGIDES-GKIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SALAR (Serine hydroxymethyltransferase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=glyA PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.046e-32
Identity = 75/155 (48.39%), Postives = 99/155 (63.87%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L  GGHL+HG       ++     +  +PY + +++G IDYD
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHG-----SPVNFSGKLYNIIPYGI-DASGKIDYD 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_DESHY (Serine hydroxymethyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=glyA PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.046e-32
Identity = 70/155 (45.16%), Postives = 101/155 (65.16%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            DPE+A+ I  E+ RQ   +ELI SENF S +VM A GSV+TNKY+EGYPG RYYGG EY+D+ E L ++R  + F  +      NVQ  SG+ +N  VY A+LKP D ++ ++L HGGHL+HG       ++   +++  + Y ++++T  IDYD
Sbjct:   12 DPEVAEAIAQEEQRQRYKIELIASENFVSRAVMAAQGSVLTNKYAEGYPGKRYYGGCEYVDIVEDLARERVKKLFGAE----HANVQPHSGAQANTAVYFAMLKPGDTVLGMNLSHGGHLTHG-----SPVNISGMYYNFVAYGVDQATERIDYD 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_ACIAD (Serine hydroxymethyltransferase OS=Acinetobacter sp. (strain ADP1) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.046e-32
Identity = 77/163 (47.24%), Postives = 97/163 (59.51%), Query Frame = 1
Query:  208 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            N  L   DPE+A  IE E ARQ   +ELI SEN+ S +VM+A GS +TNKY+EGYPG RYYGG EY+D+ E L   RA   F  D      NVQ  +GS +N  VY ALL   D ++ + L HGGHL+HG      K++     +  + Y LN  TG IDYD+
Sbjct:    4 NISLSEFDPELAKSIEAEDARQEAHIELIASENYCSPAVMEAQGSKLTNKYAEGYPGKRYYGGCEYVDVIEQLAIDRAKALFGAD----YANVQPHAGSQANSAVYLALLNAGDTVLGMSLAHGGHLTHG-----AKVNFSGKTYNAVQYGLNPETGEIDYDE 157          
The following BLAST results are available for this feature:
BLAST of FC868797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_METMA3.864e-3245.63Serine hydroxymethyltransferase OS=Methanosarcina ... [more]
GLYA_EUBR33.864e-3248.08Serine hydroxymethyltransferase OS=Eubacterium rec... [more]
GLYA4_COLP33.864e-3248.72Serine hydroxymethyltransferase 4 OS=Colwellia psy... [more]
GLYA_XANCP5.046e-3248.75Serine hydroxymethyltransferase OS=Xanthomonas cam... [more]
GLYA_XANCB5.046e-3248.75Serine hydroxymethyltransferase OS=Xanthomonas cam... [more]
GLYA_XANC85.046e-3248.75Serine hydroxymethyltransferase OS=Xanthomonas cam... [more]
GLYA_SHEPC5.046e-3247.44Serine hydroxymethyltransferase OS=Shewanella putr... [more]
GLYA_SALAR5.046e-3248.39Serine hydroxymethyltransferase OS=Salmonella ariz... [more]
GLYA_DESHY5.046e-3245.16Serine hydroxymethyltransferase OS=Desulfitobacter... [more]
GLYA_ACIAD5.046e-3247.24Serine hydroxymethyltransferase OS=Acinetobacter s... [more]

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Properties
Property NameValue
Genbank descriptionC31004H06EF AbioticL1 Citrus clementina cDNA clone C31004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868797 ID=FC868797; Name=FC868797; organism=Citrus clementina; type=EST; length=697bp
AACAAAGAAGAAACAGAACAACATCTTGCAGCGGGAGAGTGAGAAGCAAA
AATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCCTCGACAAAC
CCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATGTCATCTTTG
CCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCACTTGGCCAAA
ACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTGCTGACATTA
TCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTCATTCCTTCA
GAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGAC
CAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACG
AGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCA
TTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGG
ATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATA
GGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTAT
CAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAAT
GCCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGT
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