FC868797

Overview
NameFC868797
Unique NameFC868797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA2_COLP3 (Serine hydroxymethyltransferase 2 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.046e-32
Identity = 75/156 (48.08%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D  I   +E E  RQ   +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG E++D+ E L   RA E F  D      NVQ  SGS +N  V+ ALLKP + ++ + L HGGHL+HG      K+S     +  + Y LNE+TG IDY++
Sbjct:   12 DDSIWQAMEQEDKRQQDHVELIASENYTSARVMQAQGSQLTNKYAEGYPGKRYYGGCEHVDVIEQLAIDRAKELFGAD----YANVQPHSGSQANAAVFMALLKPGETVLGMSLAHGGHLTHG-----SKVSFSGKIYNAVQYGLNEATGEIDYEE 158          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_THESQ (Serine hydroxymethyltransferase OS=Thermotoga sp. (strain RQ2) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.591e-32
Identity = 74/157 (47.13%), Postives = 99/157 (63.06%), Query Frame = 1
Query:  226 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            VDPEI +++ +E  RQ  GLELI SENF S++V++ +GS++TNKY+EGYP  RYYGG E++D AE L  +RA   F         NVQ  SGS +N  VY AL +P D IM + L HGGHL+HG       ++     F+ +PY +N  T  IDYD+
Sbjct:    8 VDPEIYEVLVNELKRQEYGLELIASENFASLAVIETMGSMLTNKYAEGYPQKRYYGGCEWVDRAEELAIERAKRLFGAK----FANVQPHSGSQANMAVYLALAQPGDTIMGMSLSHGGHLTHG-----APVNFSGKIFKVVPYGVNLETETIDYDE 155          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_THEP1 (Serine hydroxymethyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.591e-32
Identity = 74/157 (47.13%), Postives = 99/157 (63.06%), Query Frame = 1
Query:  226 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            VDPEI +++ +E  RQ  GLELI SENF S++V++ +GS++TNKY+EGYP  RYYGG E++D AE L  +RA   F         NVQ  SGS +N  VY AL +P D IM + L HGGHL+HG       ++     F+ +PY +N  T  IDYD+
Sbjct:    8 VDPEIYEVLVNELKRQEYGLELIASENFASLAVIETMGSMLTNKYAEGYPQKRYYGGCEWVDRAEELAIERAKRLFGAK----FANVQPHSGSQANMAVYLALAQPGDTIMGMSLSHGGHLTHG-----APVNFSGKIFKVVPYGVNLETETIDYDE 155          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SACD2 (Serine hydroxymethyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.591e-32
Identity = 73/160 (45.62%), Postives = 97/160 (60.62%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L+  DPEI   I+ E  RQ + +ELI SEN+TS  VM+A G+ +TNKY+EGYPG RYYGG EY+D AE+L  +RA   F  D      NVQ  SGS +N  VY AL  P D ++ + L HGGHL+HG       +S     +  + Y +N  TG +DY++
Sbjct:    8 LDAFDPEIWQSIQDEAQRQEEHIELIASENYTSPMVMEAQGTKLTNKYAEGYPGKRYYGGCEYVDKAEALAIERAKTLFGAD----YANVQPHSGSQANSAVYAALCSPGDTVLGMSLAHGGHLTHG-----ASVSFSGKMYNAVQYGINPDTGLVDYEE 158          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_METAC (Serine hydroxymethyltransferase OS=Methanosarcina acetivorans GN=glyA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.591e-32
Identity = 73/160 (45.62%), Postives = 103/160 (64.38%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            +E +DP++ + I+ E  RQ   L LI SEN+ S +VM+A GS+MTNKY+EGY G RYYGG +++D+AE+L   RA E F        VNVQ  SGS +N  VY ++L+P D IM++DL HGGHLSHG       +S     +  +PY +++ T  +DYD+
Sbjct:    4 IEKIDPDMFEAIQKEADRQEHKLNLIASENYASRAVMEAQGSIMTNKYAEGYSGKRYYGGCDFVDIAENLAIARAKEIFGAK----YVNVQPHSGSGANMAVYFSVLQPGDTIMSMDLSHGGHLSHG-----SPVSFSGKLYNIVPYGVSKETEALDYDE 154          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_HELPY (Serine hydroxymethyltransferase OS=Helicobacter pylori GN=glyA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.591e-32
Identity = 77/160 (48.12%), Postives = 103/160 (64.38%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            LE  D EI ++I  E  RQ + LE+I SEN+T  SVM+A+GSV+TNKY+EGYP  RYYGG E +D  ESL  +RA + F         NVQ+ SGS +N  VY ALLKP+D+I+ +DL  GGHL+HG      K+S     +++  Y +N   GYIDY++
Sbjct:    5 LEQTDSEIFELIFEEYKRQNEHLEMIASENYTFASVMEAMGSVLTNKYAEGYPNKRYYGGCEVVDKIESLAIERAKKLFNCQ----FANVQAHSGSQANNAVYHALLKPYDKILGMDLSCGGHLTHG-----AKVSLTGKHYQSFSYGVN-LDGYIDYEE 154          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_HELPS (Serine hydroxymethyltransferase OS=Helicobacter pylori (strain Shi470) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.591e-32
Identity = 77/160 (48.12%), Postives = 103/160 (64.38%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            LE  D EI ++I  E  RQ + LE+I SEN+T  SVM+A+GSV+TNKY+EGYP  RYYGG E +D  ESL  +RA + F         NVQ+ SGS +N  VY ALLKP+D+I+ +DL  GGHL+HG      K+S     +++  Y +N   GYIDY++
Sbjct:    5 LEQTDSEIFELIFEEYKRQNEHLEMIASENYTFASVMEAMGSVLTNKYAEGYPNKRYYGGCEVVDKIESLAIERAKKLFNCQ----FANVQAHSGSQANNAVYHALLKPYDKILGMDLSCGGHLTHG-----AKVSLTGKHYQSFSYGVN-LDGYIDYEE 154          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_GEOUR (Serine hydroxymethyltransferase OS=Geobacter uraniireducens (strain Rf4) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.591e-32
Identity = 74/160 (46.25%), Postives = 97/160 (60.62%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            LE  DP +A+ I  E  RQ   LELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG   +D+ E+L  +RA E F  +      NVQ  SGS +N  VY  +LKP D ++ ++L HGGHL+HG       ++    FF  +PY +      IDYD+
Sbjct:    4 LETFDPAVANAIRLETERQEYNLELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCHNVDIVENLAIERAKELFGAE----HANVQPHSGSQANMAVYFTVLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGKFFNIVPYGVTRENQTIDYDE 154          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_CYAP8 (Serine hydroxymethyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.591e-32
Identity = 78/156 (50.00%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DP +A+II+ E  RQ   LELI SENFTS +V+ A GSV+TNKY+EG P  RYYGG EYID AE L   RA E F         NVQ  SG+ +NF V+ ALL P D IM +DL HGGHL+HG       ++    +F+   Y +N  T  +DYDQ
Sbjct:   13 DPAMAEIIQGELQRQRDHLELIASENFTSEAVLAAQGSVLTNKYAEGLPKKRYYGGCEYIDRAEQLAIDRAKELFGAA----HANVQPHSGAQANFAVFLALLSPGDTIMGMDLSHGGHLTHG-----SPVNVSGKWFKVCHYGVNPDTERLDYDQ 159          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_ACIF5 (Serine hydroxymethyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.591e-32
Identity = 74/155 (47.74%), Postives = 95/155 (61.29%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            DP + D +  E  RQ   +ELI SEN+ S  VM A GSV+TNKY+EGYPG RYYGG EY+D+AE L   RALE F  +      NVQ+ SGS +N  VY ++L+P D+IM + L HGGHL+HG      K++     F+   Y +    G IDYD
Sbjct:   12 DPVLWDAMRKEARRQEDHVELIASENYASPMVMAAQGSVLTNKYAEGYPGKRYYGGCEYVDIAEQLAMDRALELFGAE----HANVQAHSGSQANQAVYLSVLQPGDKIMGMSLAHGGHLTHG-----AKVNVSGKLFQVAAYGVRAEDGRIDYD 157          
The following BLAST results are available for this feature:
BLAST of FC868797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA2_COLP35.046e-3248.08Serine hydroxymethyltransferase 2 OS=Colwellia psy... [more]
GLYA_THESQ6.591e-3247.13Serine hydroxymethyltransferase OS=Thermotoga sp. ... [more]
GLYA_THEP16.591e-3247.13Serine hydroxymethyltransferase OS=Thermotoga petr... [more]
GLYA_SACD26.591e-3245.63Serine hydroxymethyltransferase OS=Saccharophagus ... [more]
GLYA_METAC6.591e-3245.63Serine hydroxymethyltransferase OS=Methanosarcina ... [more]
GLYA_HELPY6.591e-3248.13Serine hydroxymethyltransferase OS=Helicobacter py... [more]
GLYA_HELPS6.591e-3248.13Serine hydroxymethyltransferase OS=Helicobacter py... [more]
GLYA_GEOUR6.591e-3246.25Serine hydroxymethyltransferase OS=Geobacter urani... [more]
GLYA_CYAP86.591e-3250.00Serine hydroxymethyltransferase OS=Cyanothece sp. ... [more]
GLYA_ACIF56.591e-3247.74Serine hydroxymethyltransferase OS=Acidithiobacill... [more]

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Properties
Property NameValue
Genbank descriptionC31004H06EF AbioticL1 Citrus clementina cDNA clone C31004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868797 ID=FC868797; Name=FC868797; organism=Citrus clementina; type=EST; length=697bp
AACAAAGAAGAAACAGAACAACATCTTGCAGCGGGAGAGTGAGAAGCAAA
AATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCCTCGACAAAC
CCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATGTCATCTTTG
CCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCACTTGGCCAAA
ACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTGCTGACATTA
TCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTCATTCCTTCA
GAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGAC
CAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACG
AGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCA
TTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGG
ATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATA
GGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTAT
CAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAAT
GCCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGT
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