FC868797

Overview
NameFC868797
Unique NameFC868797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_ACIF2 (Serine hydroxymethyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.591e-32
Identity = 74/155 (47.74%), Postives = 95/155 (61.29%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            DP + D +  E  RQ   +ELI SEN+ S  VM A GSV+TNKY+EGYPG RYYGG EY+D+AE L   RALE F  +      NVQ+ SGS +N  VY ++L+P D+IM + L HGGHL+HG      K++     F+   Y +    G IDYD
Sbjct:   12 DPVLWDAMRKEARRQEDHVELIASENYASPMVMAAQGSVLTNKYAEGYPGKRYYGGCEYVDIAEQLAMDRALELFGAE----HANVQAHSGSQANQAVYLSVLQPGDKIMGMSLAHGGHLTHG-----AKVNVSGKLFQVAAYGVRAEDGRIDYD 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_XANAC (Serine hydroxymethyltransferase OS=Xanthomonas axonopodis pv. citri GN=glyA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.608e-32
Identity = 77/160 (48.12%), Postives = 98/160 (61.25%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            LE  DPE+A  I  E  RQ   +ELI SEN+ S  VM+A GS +TNKY+EGYPG RYYGG E++D+AE L  +R  + F  D      NVQ  SGS +N  VY ALL+P D I+ + L HGGHL+HG      K++     F  + Y +NE  G IDYD+
Sbjct:    8 LETYDPELAKAIAAEAGRQEDHVELIASENYCSPLVMEAQGSQLTNKYAEGYPGKRYYGGCEFVDIAEQLAIERIKQVFGAD----YANVQPHSGSQANQAVYLALLQPGDTILGMSLAHGGHLTHG-----AKVNVSGKLFNAVQYGVNEQ-GLIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SYNPW (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain WH7803) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.608e-32
Identity = 77/163 (47.24%), Postives = 101/163 (61.96%), Query Frame = 1
Query:  205 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            +NAPL   DP IA +I+ E+ RQ   LELI SENF S +VM A GSV+TNKY+EG P  RYYGG E++D  E L  +RA E F      W  NVQ  SG+ +NF V+ ALL+P D IM LDL HGGHL+HG       ++    +F  + Y +++ T  +D +
Sbjct:    9 INAPLAESDPAIARLIDQERDRQETHLELIASENFASSAVMAAQGSVLTNKYAEGLPNKRYYGGCEHVDAIEDLAIERAKELF---GAAW-ANVQPHSGAQANFAVFLALLQPGDTIMGLDLSHGGHLTHG-----SPVNVSGKWFNVVQYGVDKETQRLDME 162          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SHEAM (Serine hydroxymethyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.608e-32
Identity = 75/156 (48.08%), Postives = 99/156 (63.46%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPE+   IE E  RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E+L  +RA E F         NVQ  SGS +N  VY  LL+P D ++ ++L HGGHL+HG       ++     +  +PY ++E TG IDYD+
Sbjct:   12 DPELFKAIEDETLRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVETLAIERAKELFGAT----FANVQPHSGSQANSAVYMTLLQPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIIPYGIDE-TGKIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_THEFY (Serine hydroxymethyltransferase OS=Thermobifida fusca (strain YX) GN=glyA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31
Identity = 75/164 (45.73%), Postives = 100/164 (60.98%), Query Frame = 1
Query:  205 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L   L  +DPE+A  ++ E ARQ   LE+I SENF   +V++A G+V+TNKY+EGYPG RYYGG E++D+ E L   RA   F  +      NVQ  SG+ +N  VY ALL+P D I+ LDL HGGHL+HG      +I+        + Y + ES G IDYD+
Sbjct:    8 LTQSLAQLDPEVAAAVDAELARQRDTLEMIASENFAPRAVLEAQGTVLTNKYAEGYPGRRYYGGCEHVDVIEQLAIDRAKALFGAE----HANVQPHSGAQANTAVYFALLQPGDTILGLDLAHGGHLTHG-----MRINYSGKILNAVAYHVRESDGLIDYDE 162          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_PORGI (Serine hydroxymethyltransferase OS=Porphyromonas gingivalis GN=glyA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31
Identity = 74/155 (47.74%), Postives = 95/155 (61.29%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            D  I D+IE E  RQ KG+ELI SENF S  VMQA+GS MTNKY+EGYPG RYYGG E +D +E +   R  + +  +   W  NVQ  SG+ +N  V  A L+  D  M L+L HGGHLSHG       +++  I +  + Y L+E TG +DYD
Sbjct:    4 DSVIFDLIEKEHQRQLKGIELIASENFVSEQVMQAMGSCMTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRIKQLYGAE---W-ANVQPHSGAQANMAVLLACLEAGDTFMGLNLEHGGHLSHG-----SLVNSSGILYRPIGYNLSEETGMVDYD 149          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_PORG3 (Serine hydroxymethyltransferase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=glyA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31
Identity = 74/155 (47.74%), Postives = 95/155 (61.29%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            D  I D+IE E  RQ KG+ELI SENF S  VMQA+GS MTNKY+EGYPG RYYGG E +D +E +   R  + +  +   W  NVQ  SG+ +N  V  A L+  D  M L+L HGGHLSHG       +++  I +  + Y L+E TG +DYD
Sbjct:    4 DSVIFDLIEKEHQRQLKGIELIASENFVSEQVMQAMGSCMTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRIKQLYGAE---W-ANVQPHSGAQANMAVLLACLEAGDTFMGLNLEHGGHLSHG-----SLVNSSGILYRPIGYNLSEETGMVDYD 149          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_PHOLL (Serine hydroxymethyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=glyA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31
Identity = 76/155 (49.03%), Postives = 97/155 (62.58%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            DPE+   +E E  RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA   F  D      NVQ  SGS +N  VY ALL+P D I+ ++L HGGHL+HG       ++     +  +PY ++ES G IDYD
Sbjct:   12 DPELWQAMEQEVVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKALFGAD----YANVQPHSGSQANAAVYMALLQPGDTILGMNLAHGGHLTHG-----SPVNFSGKLYNVVPYGIDES-GKIDYD 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_PETMO (Serine hydroxymethyltransferase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=glyA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31
Identity = 74/160 (46.25%), Postives = 98/160 (61.25%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L+  D E+ +I++ E  RQ  GLELI SEN+ S SVM+A GS+ TNKY+EGYP  RYYGG EYID  E+L + RA E F         NVQ  SGS +N   Y AL+KP D +M + L HGGHL+HG       ++   + F  + Y ++E T  I+YD+
Sbjct:    5 LKSSDNEVYEILQKELKRQEYGLELIASENYASKSVMEAAGSIFTNKYAEGYPKRRYYGGCEYIDEVETLARDRAKELFNAK----FANVQPHSGSQANMGAYLALMKPGDTLMGMSLSHGGHLTHG-----APVNFSGMLFNVVSYGVDEETETINYDE 155          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_ELUMP (Serine hydroxymethyltransferase OS=Elusimicrobium minutum (strain Pei191) GN=glyA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31
Identity = 70/160 (43.75%), Postives = 101/160 (63.12%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L+  D  + D +E E  RQ   LELI SENFTS+SVM+A GS++TNKY+EGYPG RYYGG E++DM E+L  +RA + F  +      NVQ  SG+ +N   Y AL+ P D ++ L+L HGGHL+HG+      ++    +F+ +P  + +    IDY++
Sbjct:    5 LQKTDKAVFDAVEKELGRQRTKLELIASENFTSLSVMEAQGSILTNKYAEGYPGKRYYGGCEFVDMVETLAIERAKQIFGAE----HANVQPHSGAQANMAAYLALINPGDTVLGLNLSHGGHLTHGH-----PMNFSGKYFKIVPMNVRKEDEQIDYEE 155          
The following BLAST results are available for this feature:
BLAST of FC868797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_ACIF26.591e-3247.74Serine hydroxymethyltransferase OS=Acidithiobacill... [more]
GLYA_XANAC8.608e-3248.13Serine hydroxymethyltransferase OS=Xanthomonas axo... [more]
GLYA_SYNPW8.608e-3247.24Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_SHEAM8.608e-3248.08Serine hydroxymethyltransferase OS=Shewanella amaz... [more]
GLYA_THEFY1.124e-3145.73Serine hydroxymethyltransferase OS=Thermobifida fu... [more]
GLYA_PORGI1.124e-3147.74Serine hydroxymethyltransferase OS=Porphyromonas g... [more]
GLYA_PORG31.124e-3147.74Serine hydroxymethyltransferase OS=Porphyromonas g... [more]
GLYA_PHOLL1.124e-3149.03Serine hydroxymethyltransferase OS=Photorhabdus lu... [more]
GLYA_PETMO1.124e-3146.25Serine hydroxymethyltransferase OS=Petrotoga mobil... [more]
GLYA_ELUMP1.124e-3143.75Serine hydroxymethyltransferase OS=Elusimicrobium ... [more]

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Properties
Property NameValue
Genbank descriptionC31004H06EF AbioticL1 Citrus clementina cDNA clone C31004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868797 ID=FC868797; Name=FC868797; organism=Citrus clementina; type=EST; length=697bp
AACAAAGAAGAAACAGAACAACATCTTGCAGCGGGAGAGTGAGAAGCAAA
AATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCCTCGACAAAC
CCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATGTCATCTTTG
CCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCACTTGGCCAAA
ACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTGCTGACATTA
TCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTCATTCCTTCA
GAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGAC
CAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACG
AGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCA
TTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGG
ATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATA
GGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTAT
CAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAAT
GCCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGT
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