FC868797

Overview
NameFC868797
Unique NameFC868797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA1_AGRT5 (Serine hydroxymethyltransferase 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glyA1 PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.374e-29
Identity = 72/161 (44.72%), Postives = 97/161 (60.25%), Query Frame = 1
Query:  214 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            PL  VDP+I   IE E  RQ   +ELI SEN  S +V++A GS+MTNKY+EGYPG RYYGG +++D+AE L  +RA + F ++      NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F  + Y + E    +D D+
Sbjct:   11 PLAEVDPDIFGAIEKELGRQRHEIELIASENIVSRAVLEAQGSIMTNKYAEGYPGKRYYGGCQFVDIAEELAIERAKKLFGVN----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLNSGGHLTHG-----SPVNMSGKWFNVVSYGVREGDNLLDMDE 162          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_RICFE (Serine hydroxymethyltransferase OS=Rickettsia felis GN=glyA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 73/163 (44.79%), Postives = 98/163 (60.12%), Query Frame = 1
Query:  208 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            N  L   D EI +II+HEK RQ   +ELI SENF S +V++A GS++TNKY+EGY G R+Y G E +D AE+L  +R  + F         NVQS SGS +N  VY ALL+P D I+ + L  GGHL+HG   +         +F  + Y +N+ T  IDYD+
Sbjct:    5 NNHLHETDKEIDEIIKHEKLRQNSVIELIASENFVSPAVLEAQGSILTNKYAEGYSGKRFYNGCEEVDKAENLAIERVKKLFNCK----YANVQSHSGSQANQAVYLALLQPGDTILGMSLDSGGHLTHGAAPNMS-----GKWFNAVSYSVNKETYLIDYDE 158          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_PROMP (Serine hydroxymethyltransferase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 71/160 (44.38%), Postives = 102/160 (63.75%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L+  DP I+++I  EK RQ   LELI SENF S++VMQA GSV+TNKY+EG P  RYYGG E++D  E L  +RA + F  D   W  NVQ  SG+ +N  V+ +LLKP D I+ +DL HGGHL+HG       ++    +F  + Y +++ T  +++++
Sbjct:    7 LKESDPIISNLINSEKNRQETHLELIASENFASMAVMQAQGSVLTNKYAEGLPQKRYYGGCEFVDEIEELAIERAKQLFDAD---W-ANVQPHSGAQANAAVFLSLLKPGDTILGMDLSHGGHLTHG-----SPVNMSGKWFNAVHYGVDKETNKLNFNE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_PASMU (Serine hydroxymethyltransferase OS=Pasteurella multocida GN=glyA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 73/155 (47.10%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            DP +   I+ E  RQ + +ELI SEN+ S  VM+A GS  TNKY+EGYPG RYYGG EY D+ E L   RA E F  D     VNVQ  SGS +N  VY ALL+PHD I+ + L HGGHL+HG       +S     +  + Y +  + G IDY+
Sbjct:   12 DPVLWQAIQDENRRQEEHIELIASENYASPRVMEAQGSQFTNKYAEGYPGKRYYGGCEYADIVEQLAIDRAKELFHAD----YVNVQPHSGSQANAAVYGALLQPHDTILGMSLAHGGHLTHG-----ASVSFSGKIYNAVQYGIT-AEGLIDYE 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_MOOTA (Serine hydroxymethyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 71/156 (45.51%), Postives = 94/156 (60.26%), Query Frame = 1
Query:  226 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            VDPEI   +  E  RQ   LELI SENF S +VM+A   V+TNKY+EGYPG RYYGG E+ D+ E+L ++RA   F  +      NVQ  SGS +N  VY A+L P D+ + ++L HGGHL+HG       +S    ++    Y ++  TG IDYD
Sbjct:    9 VDPEIVAAVRGELQRQRTHLELIASENFVSQAVMEAYSCVLTNKYAEGYPGKRYYGGCEWADVVENLARERAKALFGAE----HANVQPHSGSQANTAVYLAVLNPGDKALGMNLAHGGHLTHG-----SPVSLSGKYYNFCFYGVDAKTGRIDYD 155          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_KOSOT (Serine hydroxymethyltransferase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 68/156 (43.59%), Postives = 94/156 (60.26%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPE+ +I+  E  RQ +GLELI SENF S +VM+A+GS +TNKY+EGYP  RYYGG +++D AE L ++R  + F         NVQ  SGS +N   Y A+  P D IM + L HGGHL+HG       ++     F  + Y ++  T  +DYD+
Sbjct:    9 DPEVYEIVMKELGRQEEGLELIASENFVSPAVMEAMGSTLTNKYAEGYPRRRYYGGCKFVDEAEQLARERVKKLFNCK----YANVQPHSGSQANMAAYLAVANPGDTIMGMSLSHGGHLTHG-----SPVNFSGKLFNIVSYGVDLETEVLDYDE 155          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_HELPJ (Serine hydroxymethyltransferase OS=Helicobacter pylori J99 GN=glyA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 74/160 (46.25%), Postives = 100/160 (62.50%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            LE  D EI + I  E  RQ + LE+I SEN+T  SVM+A+GS++TNKY+EGYP  RYYGG E +D  ESL  +RA + F         NVQ+ SGS +N  VY ALLK +D+I+ +DL  GGHL+HG      K+S     +++  Y +    GYIDY++
Sbjct:    5 LEQTDSEIFEFIVEEFKRQNEHLEMIASENYTFPSVMEAMGSILTNKYAEGYPNKRYYGGCEVVDKIESLAIERAKKLFNCQ----FANVQAHSGSQANNAVYHALLKLYDKILGMDLSCGGHLTHG-----AKVSLTGKHYQSFSYGVG-LDGYIDYEE 154          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_FLAPJ (Serine hydroxymethyltransferase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 71/156 (45.51%), Postives = 93/156 (59.62%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D +I D+I  E+ RQ  GLELI SENF S  VM+A GSV+TNKY+EGYPG RYYGG E +D+ E +   RA + F  +      NVQ  SGS +N  V+ A LKP D I+  DL HGGHL+HG       ++     +    Y +   TG ++YD+
Sbjct:    4 DQQIFDLIIEEQDRQIHGLELIASENFVSDQVMEAAGSVLTNKYAEGYPGKRYYGGCEVVDVIEQIAIDRAKDLFGAE----YANVQPHSGSQANTAVFAACLKPGDTILGFDLSHGGHLTHG-----SPVNFSGKLYNPTFYGVEPETGMLNYDK 150          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_BACA2 (Serine hydroxymethyltransferase OS=Bacillus amyloliquefaciens (strain FZB42) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 66/159 (41.51%), Postives = 101/159 (63.52%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            L V D ++ + I+ E+ RQ   +ELI SENF + +VM+A GSV+TNKY+EGYPG RYYGG E++D+ E + + RA E F  +     VNVQ  SG+ +N  VY  +L+  D ++ ++L HGGHL+HG       ++   + +  + Y +++ T YIDY+
Sbjct:    4 LPVQDKQVFNAIKDERKRQQTKIELIASENFVTEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRAKEIFGAE----HVNVQPHSGAQANMAVYFTILEHGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVEYGVDKDTQYIDYE 153          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_AZOVD (Serine hydroxymethyltransferase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 69/156 (44.23%), Postives = 97/156 (62.18%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D E+   ++ E  RQ   +ELI SEN+TS +VM+A GSV+TNKY+EGYPG RYYGG EY+D+ E L   RA + F  D      NVQ  +GS +N  VY AL+KP D ++ + L HGGHL+HG       ++     +  + Y + ++ G+IDYD+
Sbjct:   12 DAELFAAMKQEAQRQEDHIELIASENYTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKQLFGAD----YANVQPHAGSQANAAVYQALVKPGDTVLGMSLAHGGHLTHG-----ASVNFSGKMYNAVQYGI-DANGFIDYDE 157          
The following BLAST results are available for this feature:
BLAST of FC868797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA1_AGRT51.374e-2944.72Serine hydroxymethyltransferase 1 OS=Agrobacterium... [more]
GLYA_RICFE1.795e-2944.79Serine hydroxymethyltransferase OS=Rickettsia feli... [more]
GLYA_PROMP1.795e-2944.38Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_PASMU1.795e-2947.10Serine hydroxymethyltransferase OS=Pasteurella mul... [more]
GLYA_MOOTA1.795e-2945.51Serine hydroxymethyltransferase OS=Moorella thermo... [more]
GLYA_KOSOT1.795e-2943.59Serine hydroxymethyltransferase OS=Kosmotoga olear... [more]
GLYA_HELPJ1.795e-2946.25Serine hydroxymethyltransferase OS=Helicobacter py... [more]
GLYA_FLAPJ1.795e-2945.51Serine hydroxymethyltransferase OS=Flavobacterium ... [more]
GLYA_BACA21.795e-2941.51Serine hydroxymethyltransferase OS=Bacillus amylol... [more]
GLYA_AZOVD1.795e-2944.23Serine hydroxymethyltransferase OS=Azotobacter vin... [more]

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Properties
Property NameValue
Genbank descriptionC31004H06EF AbioticL1 Citrus clementina cDNA clone C31004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868797 ID=FC868797; Name=FC868797; organism=Citrus clementina; type=EST; length=697bp
AACAAAGAAGAAACAGAACAACATCTTGCAGCGGGAGAGTGAGAAGCAAA
AATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCCTCGACAAAC
CCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATGTCATCTTTG
CCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCACTTGGCCAAA
ACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTGCTGACATTA
TCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTCATTCCTTCA
GAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGAC
CAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACG
AGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCA
TTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGG
ATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATA
GGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTAT
CAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAAT
GCCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGT
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