FC868797

Overview
NameFC868797
Unique NameFC868797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_ACHLI (Serine hydroxymethyltransferase OS=Acholeplasma laidlawii (strain PG-8A) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 71/160 (44.38%), Postives = 98/160 (61.25%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L+  D E+ + I+ E  RQ + +ELI SENF S +V++A GS++TNKY+EGYP  RYYGG E++D  E L Q R  + F        VNVQ  SGS +N  VY ALL P DR++ +DL  GGHL+HGY     K+S    ++E   Y ++     IDY++
Sbjct:    3 LKDYDLELFNAIQREDNRQKEHIELIASENFVSDAVLEAQGSILTNKYAEGYPNKRYYGGCEFVDQVEILAQDRLKQIFNAK----FVNVQPHSGSQANAAVYQALLSPGDRVLGMDLNAGGHLTHGY-----KLSFSGHYYEAHAYGVSRFDERIDYEE 153          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA3_PSEPF (Serine hydroxymethyltransferase 3 OS=Pseudomonas fluorescens (strain Pf0-1) GN=glyA3 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 71/156 (45.51%), Postives = 95/156 (60.90%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D  +   +  E+ RQ   +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG E++D  E+L  +RA + F  D      NVQ  SGS +N  VY ALL+  D I+ + L HGGHL+HG      K+S+    +  + Y ++  TG IDYD+
Sbjct:   12 DDALLAAMNAEEQRQEDHIELIASENYTSKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVDKVEALAIERAKQLFGAD----YANVQPHSGSSANSAVYLALLQAGDTILGMSLAHGGHLTHG-----AKVSSSGKLYNAVQYGIDTKTGLIDYDE 158          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA1_PSEPK (Serine hydroxymethyltransferase 1 OS=Pseudomonas putida (strain KT2440) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 71/156 (45.51%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D  +   +  E+ RQ   +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG E++D  E+L  +RA + F  D      NVQ  SGS +N  VY ALL+  D I+ + L HGGHL+HG      K+S+    +  + Y ++ +TG IDYD+
Sbjct:   12 DDALLAAMNAEEQRQEDHIELIASENYTSKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVDKVEALAIERAKQLFGAD----YANVQPHSGSSANGAVYLALLQAGDTILGMSLAHGGHLTHG-----AKVSSSGKLYNAVQYGIDTNTGLIDYDE 158          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_TERTT (Serine hydroxymethyltransferase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 70/156 (44.87%), Postives = 91/156 (58.33%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DP++   I  E  RQ + +ELI SEN+TS  VM A GS +TNKY+EGYP  RYYGG EY+D  E L  +RA   F  D      NVQ  SGS +N  VY AL  P D ++ + L HGGHL+HG      K++     +  + Y LN  TG +DY++
Sbjct:   12 DPDVWQAIVDEGVRQEEHIELIASENYTSPLVMVAQGSKLTNKYAEGYPSKRYYGGCEYVDKVEELAIERAKALFGAD----YANVQPHSGSQANSAVYAALCAPGDTVLGMSLDHGGHLTHG-----AKVNFSGKMYNAVQYGLNPETGLVDYEE 158          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_PSEU5 (Serine hydroxymethyltransferase OS=Pseudomonas stutzeri (strain A1501) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 71/156 (45.51%), Postives = 95/156 (60.90%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D ++   ++ E  RQ   +ELI SEN+TS +VM+A GSV+TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  +GS +N  VY ALL   D I+ + L HGGHL+HG       +S+    +  + Y +N+  G IDYD+
Sbjct:   12 DADLFAAMQQEAKRQEDHIELIASENYTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD----YANVQPHAGSQANAAVYLALLSAGDTILGMSLAHGGHLTHG-----ASVSSSGKLYNAVQYGINDQ-GLIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_PSEHT (Serine hydroxymethyltransferase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 71/156 (45.51%), Postives = 94/156 (60.26%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPE+ D I  E ARQ   +ELI SEN+ S  V++A GS +TNKY+EGYPG RYYGG E++D+ E L   RA E F  D      NVQ  +GS +N  V+ ALL   D ++ + L HGGHL+HG       ++     +  + Y L+E+TG IDY Q
Sbjct:   12 DPELFDAIAKETARQEDHIELIASENYCSPRVLEAQGSQLTNKYAEGYPGKRYYGGCEHVDVVEQLAIDRANELFGSD----YANVQPHAGSQANAAVFLALLNAGDTVLGMSLAHGGHLTHG-----SHVNFSGKLYNAIQYGLDETTGEIDYAQ 158          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_PERMH (Serine hydroxymethyltransferase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 71/160 (44.38%), Postives = 97/160 (60.62%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L+ VD E+ + +  E  RQ + LE+I SEN+TS +VM+A GSV+TNKY+EG P  RYYGG EY+D+ E L  +R  + +  +      NVQ  SGS +N  VY + L+  D IM + L HGGHL+HG      K++   I F  + Y +N  T  IDYDQ
Sbjct:    5 LKQVDQEVFEAVSKEFKRQQEHLEMIASENYTSYAVMEAQGSVLTNKYAEGLPHKRYYGGCEYVDIVEDLAIERLKKIYGAE----HANVQPHSGSQANQAVYFSQLQAGDTIMGMSLAHGGHLTHG-----AKVNLSGIVFNAVQYGVNPETELIDYDQ 155          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_NITEU (Serine hydroxymethyltransferase OS=Nitrosomonas europaea GN=glyA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 70/158 (44.30%), Postives = 94/158 (59.49%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDY 690
            +E VDP++   I+ E  RQ   +ELI SEN+ S +V+QA G+V+TNKY+EGYPG RYYGG  Y+D+ E L   R    F  +     VNVQ  SGS +N  VY + LKP D ++ + L HGGHL+HG       ++     F ++ Y LN  T  IDY
Sbjct:    8 IEQVDPDLWQAIKGEVQRQEDHIELIASENYASPAVLQAQGTVLTNKYAEGYPGKRYYGGCRYVDIVEQLAIDRLRNLFNAE----YVNVQPHSGSQANAAVYLSALKPGDTLLGMSLAHGGHLTHG-----SAVNMSGKIFNSISYGLNPETEEIDY 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_MANSM (Serine hydroxymethyltransferase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 73/162 (45.06%), Postives = 98/162 (60.49%), Query Frame = 1
Query:  208 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            N  +   DP + D I++E  RQ + +ELI SEN+ + +VM+A GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +N  VY ALL   D I+ +DL HGGHL+HG      K+S     + ++ Y +  + G IDY+
Sbjct:    4 NHSIAEFDPVLWDAIQNENRRQEEHIELIASENYVTKAVMEAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANAAVYGALLNAGDTILGMDLAHGGHLTHG-----AKVSFSGKIYNSVLYGIT-AEGLIDYE 155          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_HALOH (Serine hydroxymethyltransferase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 72/160 (45.00%), Postives = 95/160 (59.38%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L+ VDP+I  +IE E  RQ + +ELI SENF S +VM+A GS +TNKY+EGYP  RYYGG E +D  E L   RA E F  +     VNVQ  SGS +N  VY A + P   I+A+DL HGGHL+HG       ++    ++  + Y +      ID+DQ
Sbjct:    4 LKKVDPDIFGLIEEEDQRQRRNIELIASENFVSDAVMEAAGSCLTNKYAEGYPHKRYYGGCEVVDKVEELAIARARELFGAE----HVNVQPHSGSQANQAVYFATVPPGGTILAMDLTHGGHLTHG-----SPVNMSGKYYNFIHYGVTREEEVIDFDQ 154          
The following BLAST results are available for this feature:
BLAST of FC868797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_ACHLI1.795e-2944.38Serine hydroxymethyltransferase OS=Acholeplasma la... [more]
GLYA3_PSEPF1.795e-2945.51Serine hydroxymethyltransferase 3 OS=Pseudomonas f... [more]
GLYA1_PSEPK1.795e-2945.51Serine hydroxymethyltransferase 1 OS=Pseudomonas p... [more]
GLYA_TERTT2.344e-2944.87Serine hydroxymethyltransferase OS=Teredinibacter ... [more]
GLYA_PSEU52.344e-2945.51Serine hydroxymethyltransferase OS=Pseudomonas stu... [more]
GLYA_PSEHT2.344e-2945.51Serine hydroxymethyltransferase OS=Pseudoalteromon... [more]
GLYA_PERMH2.344e-2944.38Serine hydroxymethyltransferase OS=Persephonella m... [more]
GLYA_NITEU2.344e-2944.30Serine hydroxymethyltransferase OS=Nitrosomonas eu... [more]
GLYA_MANSM2.344e-2945.06Serine hydroxymethyltransferase OS=Mannheimia succ... [more]
GLYA_HALOH2.344e-2945.00Serine hydroxymethyltransferase OS=Halothermothrix... [more]

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Properties
Property NameValue
Genbank descriptionC31004H06EF AbioticL1 Citrus clementina cDNA clone C31004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868797 ID=FC868797; Name=FC868797; organism=Citrus clementina; type=EST; length=697bp
AACAAAGAAGAAACAGAACAACATCTTGCAGCGGGAGAGTGAGAAGCAAA
AATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCCTCGACAAAC
CCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATGTCATCTTTG
CCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCACTTGGCCAAA
ACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTGCTGACATTA
TCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTCATTCCTTCA
GAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGAC
CAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACG
AGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCA
TTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGG
ATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATA
GGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTAT
CAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAAT
GCCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGT
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