FC868797

Overview
NameFC868797
Unique NameFC868797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_CORJK (Serine hydroxymethyltransferase OS=Corynebacterium jeikeium (strain K411) GN=glyA PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 70/166 (42.17%), Postives = 99/166 (59.64%), Query Frame = 1
Query:  199 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            +Q N PL  +DP++A+ I  E  RQ   LE+I SENF   +V+QA GSV+TNKY+EGYPG RYYGG E++D+ E L + RA + F  +      NVQ  +G+ +N  V  +L  P D+IM L L HGGHL+HG       ++     +E   Y ++  T  +D D+
Sbjct:   13 QQHNTPLAELDPQVAEAIAGELRRQRTTLEMIASENFVPRAVLQAQGSVLTNKYAEGYPGRRYYGGCEHVDVIEDLARDRAKQVFGAE----FANVQPHAGAQANAAVLMSLANPGDKIMGLSLAHGGHLTHGMH-----LNFSGKLYEVAAYEVDPETFRLDMDK 169          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_CLOTH (Serine hydroxymethyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 67/157 (42.68%), Postives = 99/157 (63.06%), Query Frame = 1
Query:  226 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            +DPE+A  IE E  RQ   +ELI SENF S +V++A+G+ +TNKY+EGYPG RYYGG E++D+ E+L  +RA + F  +      NVQ  SG+ +N  V+ A+L P D I+ ++L HGGHLSHG       ++    ++  + Y + +    IDYD+
Sbjct:   10 IDPEVAKAIELEVNRQRNKIELIASENFVSKAVIEAMGTPLTNKYAEGYPGKRYYGGCEFVDIIENLAIERAKKIFGAE----HANVQPHSGAQANMAVFFAVLNPGDTILGMNLSHGGHLSHG-----SPVNMSGKYYNVISYGVRKEDCRIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_CLONN (Serine hydroxymethyltransferase OS=Clostridium novyi (strain NT) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 72/160 (45.00%), Postives = 98/160 (61.25%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L + D EI +II+ E  RQ   +ELI SENF S SVM+A+GS +TNKY+EGYP  RYYGG E +D  ESL  +R  + F  +      NVQ  SGS +N  VY ++L+P D IM ++L HGGHL+HG       ++     F  + Y +N+ T  I+YD+
Sbjct:    6 LALTDKEIFNIIQLENNRQNNTIELIASENFASKSVMEAMGSQLTNKYAEGYPSKRYYGGCEEVDKIESLAIERLKKIFGCE----HANVQPHSGSQANMAVYLSVLEPGDTIMGMNLSHGGHLTHG-----SPVNFSGRLFNFVAYGVNKETELINYDE 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_CAMC5 (Serine hydroxymethyltransferase OS=Campylobacter curvus (strain 525.92) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 73/160 (45.62%), Postives = 98/160 (61.25%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L+  D EI D++  E  RQ   LE+I SENFT   VM+ +GS++TNKY+EGYPG RYYGG EY+D  E L   R  + F  +      NVQ  SGS +N  VY ALL P D+I+ +DL HGGHL+HG      K+S+    +E+  Y + E  G I+Y++
Sbjct:    3 LQSYDKEIFDLVNLELKRQCDHLEMIASENFTYPEVMEVMGSILTNKYAEGYPGKRYYGGCEYVDGIEQLAIDRCKQLFGCE----FANVQPNSGSQANQGVYGALLNPGDKILGMDLSHGGHLTHG-----AKVSSSGKIYESFFYGV-ELDGRINYER 152          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA2_PSEPF (Serine hydroxymethyltransferase 2 OS=Pseudomonas fluorescens (strain Pf0-1) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 71/156 (45.51%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D ++   +E E  RQ + +ELI SEN+TS +VM+A GSV+TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  +GS +N  VY ALL   D I+ + L HGGHL+HG       +S+    +  + Y + ++ G IDYD+
Sbjct:   12 DADLFAAMEQEAQRQEEHIELIASENYTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD----YANVQPHAGSQANAAVYLALLSAGDTILGMSLAHGGHLTHG-----ASVSSSGKLYNAIQYGI-DANGLIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA1_VIBPA (Serine hydroxymethyltransferase 1 OS=Vibrio parahaemolyticus GN=glyA1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 71/156 (45.51%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D E+   I+ E  RQ + +ELI SEN+TS  VM+A GS +TNKY+EGYPG RYYGG EY+D AE L   RA + F  +      NVQ  SGS +N  VY ALL P D ++ + L HGGHL+HG       ++     +  +PY ++E+ G I+YD+
Sbjct:   12 DAELFAAIQEETLRQEEHIELIASENYTSPRVMEAQGSQLTNKYAEGYPGKRYYGGCEYVDKAEQLAIDRACKLFGCE----YANVQPHSGSQANSAVYMALLNPGDTVLGMSLAHGGHLTHG-----SPVNFSGKHYNVIPYGIDEA-GQINYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SHEWM (Serine hydroxymethyltransferase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=glyA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.061e-29
Identity = 69/154 (44.81%), Postives = 96/154 (62.34%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDY 690
            DP++   I+ E  RQ + +ELI SEN+TS  V++A GS +TNKY+EGYPG RYYGG E++D+AE L   RA E F         NVQ  SGS +N  V+ ALL+  D ++ + L HGGHL+HG       +S     + ++ Y ++E+TG IDY
Sbjct:   12 DPQLFQAIQDETRRQEEHIELIASENYTSPRVLEAQGSQLTNKYAEGYPGKRYYGGCEHVDIAEELAISRAKELFGAT----YANVQPHSGSQANAAVFMALLEGGDTVLGMSLAHGGHLTHG-----SHVSFSGKLYNSVQYGIDETTGKIDY 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_RHOPB (Serine hydroxymethyltransferase OS=Rhodopseudomonas palustris (strain BisB18) GN=glyA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.061e-29
Identity = 75/163 (46.01%), Postives = 97/163 (59.51%), Query Frame = 1
Query:  208 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            +A +   DPEIA  I  E  RQ   +ELI SEN  S +VM+A GSVMTNKY+EGYPG RYYGG E++D+AE+L  +RA + F         NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F+ + Y +    G ID D+
Sbjct:   23 SATIADADPEIAAAIAGELGRQRHEIELIASENIVSRAVMEAQGSVMTNKYAEGYPGHRYYGGCEFVDVAENLAIERAKKLFGAG----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLAAGGHLTHG-----SSVNMSGKWFKPVHYGVRREDGIIDMDE 176          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_LACLA (Serine hydroxymethyltransferase OS=Lactococcus lactis subsp. lactis GN=glyA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.061e-29
Identity = 70/159 (44.03%), Postives = 95/159 (59.75%), Query Frame = 1
Query:  220 EVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            E  DPE+   I  E+ RQ + +ELI SEN  S +VM A GSV+TNKY+EGYPG RYYGG E +D+ E+L  +RA E F         NVQ  SGS +N   Y AL++P D ++ +DL  GGHL+HG       ++     +  +PY +N  T  +DYD+
Sbjct:    9 ESFDPELWAAIHAEEIRQQQNIELIASENIVSKAVMAAQGSVLTNKYAEGYPGKRYYGGTEAVDVVENLAIERAKELFGAK----FANVQPHSGSQANAAAYMALIQPGDTVLGMDLNAGGHLTHG-----ASVNFSGKTYHFVPYGVNSETELLDYDE 158          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_KINRD (Serine hydroxymethyltransferase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=glyA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.061e-29
Identity = 71/160 (44.38%), Postives = 97/160 (60.62%), Query Frame = 1
Query:  214 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            PL  VDPEIA +++ E  RQ   LE+I SENF   SV++A GSV+TNKY+EGYPG RYYGG E++D+AE L + RA E F  +      NVQ  SG+ +N     A ++  D I+ L+L HGGHL+HG      KI+     ++   Y ++  T  +D D
Sbjct:   18 PLSEVDPEIAAVLDAELGRQRDTLEMIASENFAPRSVLEAQGSVLTNKYAEGYPGKRYYGGCEHVDVAEELARTRAKELFGAE----HANVQPHSGASANAAAMHAFIRGGDGILGLELAHGGHLTHG-----MKINFSGRMYDVSSYGVDPQTFRVDMD 168          
The following BLAST results are available for this feature:
BLAST of FC868797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CORJK2.344e-2942.17Serine hydroxymethyltransferase OS=Corynebacterium... [more]
GLYA_CLOTH2.344e-2942.68Serine hydroxymethyltransferase OS=Clostridium the... [more]
GLYA_CLONN2.344e-2945.00Serine hydroxymethyltransferase OS=Clostridium nov... [more]
GLYA_CAMC52.344e-2945.63Serine hydroxymethyltransferase OS=Campylobacter c... [more]
GLYA2_PSEPF2.344e-2945.51Serine hydroxymethyltransferase 2 OS=Pseudomonas f... [more]
GLYA1_VIBPA2.344e-2945.51Serine hydroxymethyltransferase 1 OS=Vibrio paraha... [more]
GLYA_SHEWM3.061e-2944.81Serine hydroxymethyltransferase OS=Shewanella wood... [more]
GLYA_RHOPB3.061e-2946.01Serine hydroxymethyltransferase OS=Rhodopseudomona... [more]
GLYA_LACLA3.061e-2944.03Serine hydroxymethyltransferase OS=Lactococcus lac... [more]
GLYA_KINRD3.061e-2944.38Serine hydroxymethyltransferase OS=Kineococcus rad... [more]

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Properties
Property NameValue
Genbank descriptionC31004H06EF AbioticL1 Citrus clementina cDNA clone C31004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868797 ID=FC868797; Name=FC868797; organism=Citrus clementina; type=EST; length=697bp
AACAAAGAAGAAACAGAACAACATCTTGCAGCGGGAGAGTGAGAAGCAAA
AATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCCTCGACAAAC
CCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATGTCATCTTTG
CCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCACTTGGCCAAA
ACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTGCTGACATTA
TCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTCATTCCTTCA
GAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGAC
CAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACG
AGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCA
TTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGG
ATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATA
GGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTAT
CAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAAT
GCCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGT
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