FC868797

Overview
NameFC868797
Unique NameFC868797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_LEUMM (Serine hydroxymethyltransferase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=glyA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 71/156 (45.51%), Postives = 93/156 (59.62%), Query Frame = 1
Query:  226 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            +DP +   I+ E ARQ + +ELI SENFTS +V  A GSV+TNKY+EGYP  RYYGG EY+D+ E +   R  E F  +      NVQ  SGS +N   Y A LKP D+I+ + L  GGHL+HG      K+S     +E+  Y LN  T  +DY+
Sbjct:    6 LDPIVWSAIQQESARQNRTIELIASENFTSQAVRAAQGSVLTNKYAEGYPYKRYYGGTEYVDVVEQVAIDRLKELFGAE----YANVQPHSGSQANAAAYMAFLKPGDKILGMSLDAGGHLTHG-----AKVSFSGKVYESHTYGLNSETETLDYE 152          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_HERA2 (Serine hydroxymethyltransferase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=glyA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 69/156 (44.23%), Postives = 97/156 (62.18%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DP++A  I+ E  RQ  G+ELI SEN+ S +V+ A GSV+TNKY+EGYP  RYYGG E++D+AE L  KRA + F  +     VNVQ  SG+ +N  V  A L+  DR++ + L HGGHL+HG+  +    S     +E   Y ++  T  IDY++
Sbjct:   11 DPDLAQAIDSEAERQRHGIELIASENYVSSAVLAAQGSVLTNKYAEGYPRKRYYGGCEFVDVAEDLAIKRAKQLFGAE----HVNVQPHSGAQANMAVQLATLEHGDRVLGMSLAHGGHLTHGHPLNFSGKS-----YEIHGYGVDRETEQIDYEE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_BRUME (Serine hydroxymethyltransferase OS=Brucella melitensis GN=glyA PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 71/163 (43.56%), Postives = 97/163 (59.51%), Query Frame = 1
Query:  208 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            NA LE +DPEI   I +E  RQ   +ELI SEN  S +V++A GS++TNKY+EGYPG RYYGG +Y+D+ E L  +RA + F  +      NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F  + Y + +    +D D+
Sbjct:   17 NASLEDIDPEIFGAIRNELGRQRHEIELIASENIVSRAVLEAQGSILTNKYAEGYPGKRYYGGCQYVDVVEELAIERAKKLFGAE----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLNSGGHLTHG-----SPVNMSGKWFNVVSYGVRKDDHLLDMDE 170          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_BRUMB (Serine hydroxymethyltransferase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=glyA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 71/163 (43.56%), Postives = 97/163 (59.51%), Query Frame = 1
Query:  208 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            NA LE +DPEI   I +E  RQ   +ELI SEN  S +V++A GS++TNKY+EGYPG RYYGG +Y+D+ E L  +RA + F  +      NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F  + Y + +    +D D+
Sbjct:   17 NASLEDIDPEIFGAIRNELGRQRHEIELIASENIVSRAVLEAQGSILTNKYAEGYPGKRYYGGCQYVDVVEELAIERAKKLFGAE----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLNSGGHLTHG-----SPVNMSGKWFNVVSYGVRKDDHLLDMDE 170          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_BRUAB (Serine hydroxymethyltransferase OS=Brucella abortus GN=glyA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 71/163 (43.56%), Postives = 97/163 (59.51%), Query Frame = 1
Query:  208 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            NA LE +DPEI   I +E  RQ   +ELI SEN  S +V++A GS++TNKY+EGYPG RYYGG +Y+D+ E L  +RA + F  +      NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F  + Y + +    +D D+
Sbjct:   17 NASLEDIDPEIFGAIRNELGRQRHEIELIASENIVSRAVLEAQGSILTNKYAEGYPGKRYYGGCQYVDVVEELAIERAKKLFGAE----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLNSGGHLTHG-----SPVNMSGKWFNVVSYGVRKDDHLLDMDE 170          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_BRUA2 (Serine hydroxymethyltransferase OS=Brucella abortus (strain 2308) GN=glyA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 71/163 (43.56%), Postives = 97/163 (59.51%), Query Frame = 1
Query:  208 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            NA LE +DPEI   I +E  RQ   +ELI SEN  S +V++A GS++TNKY+EGYPG RYYGG +Y+D+ E L  +RA + F  +      NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F  + Y + +    +D D+
Sbjct:   17 NASLEDIDPEIFGAIRNELGRQRHEIELIASENIVSRAVLEAQGSILTNKYAEGYPGKRYYGGCQYVDVVEELAIERAKKLFGAE----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLNSGGHLTHG-----SPVNMSGKWFNVVSYGVRKDDHLLDMDE 170          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_BRUA1 (Serine hydroxymethyltransferase OS=Brucella abortus (strain S19) GN=glyA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 71/163 (43.56%), Postives = 97/163 (59.51%), Query Frame = 1
Query:  208 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            NA LE +DPEI   I +E  RQ   +ELI SEN  S +V++A GS++TNKY+EGYPG RYYGG +Y+D+ E L  +RA + F  +      NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F  + Y + +    +D D+
Sbjct:   17 NASLEDIDPEIFGAIRNELGRQRHEIELIASENIVSRAVLEAQGSILTNKYAEGYPGKRYYGGCQYVDVVEELAIERAKKLFGAE----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLNSGGHLTHG-----SPVNMSGKWFNVVSYGVRKDDHLLDMDE 170          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_AGGAC (Serine hydroxymethyltransferase OS=Aggregatibacter actinomycetemcomitans GN=glyA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 74/155 (47.74%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            DP +   IE+E  RQ + +ELI SEN+ S  VMQA GS  TNKY+EGYPG RYYGG EY D+ E L  +RA E F  D     VNVQ  SGS +N  VY  LL P D I+ + L HGGHL+HG       +S     +    Y + +  G IDYD
Sbjct:   12 DPVLWQAIENENRRQEEHIELIASENYASPRVMQAQGSQFTNKYAEGYPGKRYYGGCEYADIVEQLAIERAKELFGAD----YVNVQPHSGSQANAAVYMGLLNPGDTILGMSLAHGGHLTHG-----ASVSFSGKIYHAEQYGITDE-GLIDYD 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA2_PSEAE (Serine hydroxymethyltransferase 2 OS=Pseudomonas aeruginosa GN=glyA2 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 72/160 (45.00%), Postives = 94/160 (58.75%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L+  D E+   ++ E  RQ   +ELI SEN+ S  VMQA G  +TNKY+EGYPG RYYGG E++D  E L   RA + F  D      NVQ  SGS +N  VY ALL   D I+ + L HGGHL+HG      K+S+    +  + Y L+ +TG IDYD+
Sbjct:    8 LQGYDDELLAAMDAEDRRQEDHIELIASENYASKRVMQAQGGGLTNKYAEGYPGKRYYGGCEHVDKVERLAIDRARQLFGAD----YANVQPHSGSSANAAVYLALLNAGDTILGMSLAHGGHLTHG-----AKVSSSGKLYNAVQYGLDTATGLIDYDE 158          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_THET2 (Serine hydroxymethyltransferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=glyA PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29
Identity = 72/156 (46.15%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D  + ++I  E+ RQ +GLELI SENF S  V +AVGSV+TNKY+EGYPGARYYGG E ID  ESL  +RA   F      W  NVQ  SGS +N  VY AL++P D +M +DL  GGHL+HG      +++     ++ + Y +   T  ID ++
Sbjct:    8 DEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEAIDRVESLAIERAKALF---GAAW-ANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHG-----SRVNFSGKLYKVVSYGVRPDTELIDLEE 154          
The following BLAST results are available for this feature:
BLAST of FC868797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_LEUMM3.998e-2945.51Serine hydroxymethyltransferase OS=Leuconostoc mes... [more]
GLYA_HERA23.998e-2944.23Serine hydroxymethyltransferase OS=Herpetosiphon a... [more]
GLYA_BRUME3.998e-2943.56Serine hydroxymethyltransferase OS=Brucella melite... [more]
GLYA_BRUMB3.998e-2943.56Serine hydroxymethyltransferase OS=Brucella melite... [more]
GLYA_BRUAB3.998e-2943.56Serine hydroxymethyltransferase OS=Brucella abortu... [more]
GLYA_BRUA23.998e-2943.56Serine hydroxymethyltransferase OS=Brucella abortu... [more]
GLYA_BRUA13.998e-2943.56Serine hydroxymethyltransferase OS=Brucella abortu... [more]
GLYA_AGGAC3.998e-2947.74Serine hydroxymethyltransferase OS=Aggregatibacter... [more]
GLYA2_PSEAE3.998e-2945.00Serine hydroxymethyltransferase 2 OS=Pseudomonas a... [more]
GLYA_THET25.222e-2946.15Serine hydroxymethyltransferase OS=Thermus thermop... [more]

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Properties
Property NameValue
Genbank descriptionC31004H06EF AbioticL1 Citrus clementina cDNA clone C31004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868797 ID=FC868797; Name=FC868797; organism=Citrus clementina; type=EST; length=697bp
AACAAAGAAGAAACAGAACAACATCTTGCAGCGGGAGAGTGAGAAGCAAA
AATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCCTCGACAAAC
CCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATGTCATCTTTG
CCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCACTTGGCCAAA
ACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTGCTGACATTA
TCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTCATTCCTTCA
GAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGAC
CAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACG
AGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCA
TTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGG
ATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATA
GGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTAT
CAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAAT
GCCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGT
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