FC868797

Overview
NameFC868797
Unique NameFC868797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_RHOP5 (Serine hydroxymethyltransferase OS=Rhodopseudomonas palustris (strain BisA53) GN=glyA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 75/163 (46.01%), Postives = 96/163 (58.90%), Query Frame = 1
Query:  208 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            +A L   DPEIA  I  E  RQ   +ELI SEN  S +V++A GSVMTNKY+EGYPG RYYGG E++D+AE+L   RA + F         NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F+ + Y +    G ID D+
Sbjct:   16 SASLAEADPEIAAAIAGELGRQRHEIELIASENIVSRAVLEAQGSVMTNKYAEGYPGHRYYGGCEFVDVAENLAIDRAKKLFGAG----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLAAGGHLTHG-----ATVNMSGKWFKPVHYTVRREDGIIDMDE 169          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_RALEH (Serine hydroxymethyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=glyA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 72/159 (45.28%), Postives = 94/159 (59.12%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            ++ +DPE+   I+ E  RQ   +ELI SEN+TS +VM A GS +TNKY+EGYPG RYYGG EY+D+ E L   R  + F  +      NVQ  SGS +N  VY A+LKP D IM + L  GGHL+HG       ++    +F  + Y LN     IDYD
Sbjct:    9 IDQIDPEVFAAIQQENQRQEDHIELIASENYTSPAVMAAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRVKQLFGAE----AANVQPNSGSQANQGVYFAVLKPGDTIMGMSLAEGGHLTHG-----MALNMSGKWFNVVSYGLNAQED-IDYD 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_NITHX (Serine hydroxymethyltransferase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=glyA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 75/162 (46.30%), Postives = 96/162 (59.26%), Query Frame = 1
Query:  211 APLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            A L   DPEIA  I+ E  RQ   +ELI SEN  S +V++A GSVMTNKY+EGYPGARYYGG E++D+AE+L  +RA + F         NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F+   Y +      ID D+
Sbjct:   17 ATLAEADPEIAAAIKGELGRQRHEIELIASENIVSRAVLEAQGSVMTNKYAEGYPGARYYGGCEWVDVAETLAIERAKKLFGAQ----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLAAGGHLTHG-----APVNMSGKWFKAAHYTVRRDDHLIDMDE 169          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_MYCPA (Serine hydroxymethyltransferase OS=Mycobacterium paratuberculosis GN=glyA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 70/163 (42.94%), Postives = 101/163 (61.96%), Query Frame = 1
Query:  205 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            ++APL  +DP+IA ++  E  RQ   LE+I SENF   +V+QA GSV+TNKY+EG PG RYYGG EY+D+ E++ + RA   F  D      NVQ  SG+ +N  V  AL+ P +R++ LDL +GGHL+HG      K++     ++   Y ++ +T  ID D
Sbjct:    1 MSAPLADIDPDIAGLLGQELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEYVDVVENIARDRAKALFDAD----FANVQPHSGAQANAAVLHALMTPGERLLGLDLANGGHLTHG-----MKLNFSGKLYDVGFYGVDPTTHLIDMD 154          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_MYCA1 (Serine hydroxymethyltransferase OS=Mycobacterium avium (strain 104) GN=glyA PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 70/163 (42.94%), Postives = 101/163 (61.96%), Query Frame = 1
Query:  205 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            ++APL  +DP+IA ++  E  RQ   LE+I SENF   +V+QA GSV+TNKY+EG PG RYYGG EY+D+ E++ + RA   F  D      NVQ  SG+ +N  V  AL+ P +R++ LDL +GGHL+HG      K++     ++   Y ++ +T  ID D
Sbjct:    1 MSAPLADIDPDIAGLLGQELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEYVDVVENIARDRAKALFGAD----FANVQPHSGAQANAAVLHALMTPGERLLGLDLANGGHLTHG-----MKLNFSGKLYDVGFYGVDPTTHLIDMD 154          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_LACLS (Serine hydroxymethyltransferase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=glyA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 70/159 (44.03%), Postives = 95/159 (59.75%), Query Frame = 1
Query:  220 EVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            E  DPE+   I  E+ RQ + +ELI SEN  S +VM A GSV+TNKY+EGYPG RYYGG E +D+ E+L   RA E F        VNVQ  SGS +N   Y AL++P D ++ +DL  GGHL+HG       ++     +  +PY +N  T  +DY++
Sbjct:    9 ESFDPELWAAIHAEEIRQQQNIELIASENIVSKAVMAAQGSVLTNKYAEGYPGKRYYGGTEAVDVVENLAIDRAKELFGAK----FVNVQPHSGSQANAAAYMALIQPGDTVLGMDLNAGGHLTHG-----ASVNFSGKTYHFVPYGVNPQTELLDYEE 158          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_DEHSC (Serine hydroxymethyltransferase OS=Dehalococcoides sp. (strain CBDB1) GN=glyA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 70/159 (44.03%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            L+  DP + + I  E  R  + ++LI SEN+TS +V++A GSV TNKY+EGYPG RYY G EY D  E L   RA   F  +      NVQ  SG+ +N   Y A++KP D IM L L HGGHL+HG      K++     +  + Y LN  T  IDYD
Sbjct:    4 LKTSDPAVYNAIMQETTRLKETIDLIASENYTSKAVLEAQGSVFTNKYAEGYPGKRYYAGCEYADAVEELAIDRAKTLFHAE----HANVQPHSGAQANMAAYFAMVKPGDTIMGLTLSHGGHLTHG-----SKVNFTGKLYHVIEYGLNAETERIDYD 153          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_DEHSB (Serine hydroxymethyltransferase OS=Dehalococcoides sp. (strain BAV1) GN=glyA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 70/159 (44.03%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            L+  DP + + I  E  R  + ++LI SEN+TS +V++A GSV TNKY+EGYPG RYY G EY D  E L   RA   F  +      NVQ  SG+ +N   Y A++KP D IM L L HGGHL+HG      K++     +  + Y LN  T  IDYD
Sbjct:    4 LKTSDPAVYNAIMQETTRLKETIDLIASENYTSKAVLEAQGSVFTNKYAEGYPGKRYYAGCEYADAVEELAIDRAKTLFHAE----HANVQPHSGAQANMAAYFAMVKPGDTIMGLTLSHGGHLTHG-----SKVNFTGKLYHVIEYGLNAETERIDYD 153          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_CUPTR (Serine hydroxymethyltransferase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=glyA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 72/159 (45.28%), Postives = 94/159 (59.12%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            ++ +DPE+   I+ E  RQ   +ELI SEN+TS +VM A GS +TNKY+EGYPG RYYGG EY+D+ E L   R  + F  +      NVQ  SGS +N  VY A+LKP D IM + L  GGHL+HG       ++    +F  + Y LN     IDYD
Sbjct:    9 IDQIDPEVFAAIQQENQRQEDHIELIASENYTSPAVMAAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRVKQLFGAE----AANVQPNSGSQANQGVYFAVLKPGDTIMGMSLAEGGHLTHG-----MALNMSGKWFNVVSYGLNAQED-IDYD 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA1_RHIME (Serine hydroxymethyltransferase 1 OS=Rhizobium meliloti GN=glyA1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 71/156 (45.51%), Postives = 95/156 (60.90%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPEI   IE E  RQ   +ELI SEN  S +V++A GS+MTNKY+EGYPG RYYGG +Y+D+AE+L  +RA + F ++      NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F  + Y + E    +D D+
Sbjct:   18 DPEIFGAIEKELGRQRHEIELIASENIVSRAVLEAQGSIMTNKYAEGYPGKRYYGGCQYVDIAEALAIERAKKLFGVN----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLNSGGHLTHG-----SPVNMSGKWFNVVSYGVREDDHLLDMDE 164          
The following BLAST results are available for this feature:
BLAST of FC868797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_RHOP56.820e-2946.01Serine hydroxymethyltransferase OS=Rhodopseudomona... [more]
GLYA_RALEH6.820e-2945.28Serine hydroxymethyltransferase OS=Ralstonia eutro... [more]
GLYA_NITHX6.820e-2946.30Serine hydroxymethyltransferase OS=Nitrobacter ham... [more]
GLYA_MYCPA6.820e-2942.94Serine hydroxymethyltransferase OS=Mycobacterium p... [more]
GLYA_MYCA16.820e-2942.94Serine hydroxymethyltransferase OS=Mycobacterium a... [more]
GLYA_LACLS6.820e-2944.03Serine hydroxymethyltransferase OS=Lactococcus lac... [more]
GLYA_DEHSC6.820e-2944.03Serine hydroxymethyltransferase OS=Dehalococcoides... [more]
GLYA_DEHSB6.820e-2944.03Serine hydroxymethyltransferase OS=Dehalococcoides... [more]
GLYA_CUPTR6.820e-2945.28Serine hydroxymethyltransferase OS=Cupriavidus tai... [more]
GLYA1_RHIME6.820e-2945.51Serine hydroxymethyltransferase 1 OS=Rhizobium mel... [more]

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Properties
Property NameValue
Genbank descriptionC31004H06EF AbioticL1 Citrus clementina cDNA clone C31004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868797 ID=FC868797; Name=FC868797; organism=Citrus clementina; type=EST; length=697bp
AACAAAGAAGAAACAGAACAACATCTTGCAGCGGGAGAGTGAGAAGCAAA
AATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCCTCGACAAAC
CCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATGTCATCTTTG
CCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCACTTGGCCAAA
ACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTGCTGACATTA
TCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTCATTCCTTCA
GAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGAC
CAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACG
AGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCA
TTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGG
ATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATA
GGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTAT
CAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAAT
GCCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGT
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