FC868797

Overview
NameFC868797
Unique NameFC868797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA1_MYCTU (Serine hydroxymethyltransferase 1 OS=Mycobacterium tuberculosis GN=glyA1 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.908e-29
Identity = 70/163 (42.94%), Postives = 102/163 (62.58%), Query Frame = 1
Query:  205 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            ++APL  VDP+IA+++  E  RQ   LE+I SENF   +V+QA GSV+TNKY+EG PG RYYGG E++D+ E+L + RA   F  +      NVQ  SG+ +N  V  AL+ P +R++ LDL +GGHL+HG      +++     +E   Y ++ +T  ID D
Sbjct:    1 MSAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE----FANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHG-----MRLNFSGKLYENGFYGVDPATHLIDMD 154          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA1_MYCBO (Serine hydroxymethyltransferase 1 OS=Mycobacterium bovis GN=glyA1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.908e-29
Identity = 70/163 (42.94%), Postives = 102/163 (62.58%), Query Frame = 1
Query:  205 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            ++APL  VDP+IA+++  E  RQ   LE+I SENF   +V+QA GSV+TNKY+EG PG RYYGG E++D+ E+L + RA   F  +      NVQ  SG+ +N  V  AL+ P +R++ LDL +GGHL+HG      +++     +E   Y ++ +T  ID D
Sbjct:    1 MSAPLAEVDPDIAELLAKELGRQRDTLEMIASENFAPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE----FANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHG-----MRLNFSGKLYENGFYGVDPATHLIDMD 154          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA1_COLP3 (Serine hydroxymethyltransferase 1 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.908e-29
Identity = 68/156 (43.59%), Postives = 95/156 (60.90%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            DPE+ + + +E  RQ + +ELI SEN+ S  V++A GS +TNKY+EGYPG RYYGG EY+D+AE L   RA E F         NVQ  +GS +N  V+ AL+ P  +++ + L HGGHL+HG       +S     +E   Y L+  TG IDY++
Sbjct:   12 DPELFEAMSNEVVRQEEHIELIASENYCSPRVLEAQGSQLTNKYAEGYPGKRYYGGCEYVDIAEQLAIDRAKELFGAT----YANVQPHAGSQANAAVFQALVTPGGKVLGMSLAHGGHLTHG-----SHVSFSGKSYEAFQYGLHPETGDIDYEE 158          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_XYLFA (Serine hydroxymethyltransferase OS=Xylella fastidiosa GN=glyA PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 74/162 (45.68%), Postives = 96/162 (59.26%), Query Frame = 1
Query:  208 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 693
            +A L++ DPE+A  I  E  RQ   +ELI SEN+ S  VMQ  GS +TNKY+EGY G RYYGG E +D+AE L  +RA + F  D      NVQ  SGS +N  VY ALL+P D I+ + L HGGHL+HG       ++     F  + Y +N   G IDY+
Sbjct:    5 DARLDMYDPELAKAIAAEVMRQEDHVELIASENYCSTLVMQVQGSQLTNKYAEGYSGKRYYGGCECVDIAEQLAIERAKQLFGAD----YANVQPHSGSQANQAVYFALLQPGDTILGMSLAHGGHLTHG-----ANVNVSGKLFNAVQYGVN-GQGLIDYE 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_STRMU (Serine hydroxymethyltransferase OS=Streptococcus mutans GN=glyA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 69/159 (43.40%), Postives = 95/159 (59.75%), Query Frame = 1
Query:  220 EVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            E  D E+ + I  E+ RQ   +ELI SEN  S +VM+A GS++TNKY+EGYPG RYYGG +Y+D+ ESL  +RA + F         NVQ  SGS +N   Y AL+KP D +M LDL  GGHL+HG       +S     +  + Y ++  T  ++Y+Q
Sbjct:    9 EEYDREVWEAIHAEEKRQQNNIELIASENVVSKAVMKAQGSILTNKYAEGYPGRRYYGGTDYVDVVESLAIERAKKLFGAK----YANVQPHSGSQANAAAYMALIKPGDTVMGLDLAAGGHLTHG-----SPVSFSGQTYNFIAYNVDPETEVLNYEQ 158          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_STAAW (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain MW2) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 69/156 (44.23%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D  IA+ IE E  RQ   +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ ES+   RA   F  +     VNVQ  SGS +N  VY   L+  D ++ ++L HGGHL+HG       ++    F+  + Y +++ T  I+YD+
Sbjct:    8 DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFVDVTESIAIDRAKALFGAE----HVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHGGHLTHG-----APVNFSGKFYNFVEYGVDKDTERINYDE 154          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_STAAS (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain MSSA476) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 69/156 (44.23%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D  IA+ IE E  RQ   +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ ES+   RA   F  +     VNVQ  SGS +N  VY   L+  D ++ ++L HGGHL+HG       ++    F+  + Y +++ T  I+YD+
Sbjct:    8 DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFVDVTESIAIDRAKALFGAE----HVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHGGHLTHG-----APVNFSGKFYNFVEYGVDKDTERINYDE 154          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_STAAR (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=glyA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 69/156 (44.23%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D  IA+ IE E  RQ   +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ ES+   RA   F  +     VNVQ  SGS +N  VY   L+  D ++ ++L HGGHL+HG       ++    F+  + Y +++ T  I+YD+
Sbjct:    8 DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFVDVTESIAIDRAKALFGAE----HVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHGGHLTHG-----APVNFSGKFYNFVEYGVDKDTERINYDE 154          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_STAAN (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain N315) GN=glyA PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 69/156 (44.23%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D  IA+ IE E  RQ   +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ ES+   RA   F  +     VNVQ  SGS +N  VY   L+  D ++ ++L HGGHL+HG       ++    F+  + Y +++ T  I+YD+
Sbjct:    8 DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFVDVTESIAIDRAKALFGAE----HVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHGGHLTHG-----APVNFSGKFYNFVEYGVDKDTERINYDE 154          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_STAAM (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=glyA PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 69/156 (44.23%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D  IA+ IE E  RQ   +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ ES+   RA   F  +     VNVQ  SGS +N  VY   L+  D ++ ++L HGGHL+HG       ++    F+  + Y +++ T  I+YD+
Sbjct:    8 DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFVDVTESIAIDRAKALFGAE----HVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHGGHLTHG-----APVNFSGKFYNFVEYGVDKDTERINYDE 154          
The following BLAST results are available for this feature:
BLAST of FC868797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA1_MYCTU8.908e-2942.94Serine hydroxymethyltransferase 1 OS=Mycobacterium... [more]
GLYA1_MYCBO8.908e-2942.94Serine hydroxymethyltransferase 1 OS=Mycobacterium... [more]
GLYA1_COLP38.908e-2943.59Serine hydroxymethyltransferase 1 OS=Colwellia psy... [more]
GLYA_XYLFA1.163e-2845.68Serine hydroxymethyltransferase OS=Xylella fastidi... [more]
GLYA_STRMU1.163e-2843.40Serine hydroxymethyltransferase OS=Streptococcus m... [more]
GLYA_STAAW1.163e-2844.23Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAAS1.163e-2844.23Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAAR1.163e-2844.23Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAAN1.163e-2844.23Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAAM1.163e-2844.23Serine hydroxymethyltransferase OS=Staphylococcus ... [more]

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Properties
Property NameValue
Genbank descriptionC31004H06EF AbioticL1 Citrus clementina cDNA clone C31004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868797 ID=FC868797; Name=FC868797; organism=Citrus clementina; type=EST; length=697bp
AACAAAGAAGAAACAGAACAACATCTTGCAGCGGGAGAGTGAGAAGCAAA
AATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCCTCGACAAAC
CCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATGTCATCTTTG
CCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCACTTGGCCAAA
ACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTGCTGACATTA
TCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTCATTCCTTCA
GAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGAC
CAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACG
AGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCA
TTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGG
ATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATA
GGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTAT
CAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAAT
GCCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGT
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