FC868797

Overview
NameFC868797
Unique NameFC868797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_BACFN (Serine hydroxymethyltransferase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.495e-33
Identity = 77/156 (49.36%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D  I DIIE E  RQ KG+ELI SENF S  VM+A+GS +TNKY+EGYPG RYYGG E +D +E +   R  E F  +   W  NVQ  SG+ +N  V+ A+L P D+ M L+L HGGHLSHG   +T       I +    Y L + TG +DYDQ
Sbjct:    4 DDLIFDIIEKEHQRQLKGIELIASENFVSDQVMEAMGSCLTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRLKEIFGAE---W-ANVQPHSGAQANAAVFLAVLNPGDKFMGLNLAHGGHLSHGSLVNTS-----GIIYTPCEYNLKQETGRVDYDQ 150          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_MYXXD (Serine hydroxymethyltransferase OS=Myxococcus xanthus (strain DK 1622) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.564e-33
Identity = 78/160 (48.75%), Postives = 102/160 (63.75%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L  VDPEIA ++  E  RQ +GLELI SENF S +VM+AVGSV+TNKY+EGYPG RYYGG E +D+AE+L   RA + F  D     VNVQ+ SGS +N   + AL+KP D +++LDL  GGHL+HG        +     ++ + Y L   T  ID+ Q
Sbjct:    7 LAEVDPEIARVLREETQRQEEGLELIASENFVSPAVMEAVGSVLTNKYAEGYPGKRYYGGCEVVDVAENLAIARAKDLFGAD----AVNVQAHSGSQANMGAFMALMKPGDTMLSLDLNSGGHLTHG-----ATFNFSGKLYKVVHYGLTRDTETIDFAQ 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_ERWT9 (Serine hydroxymethyltransferase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.564e-33
Identity = 76/156 (48.72%), Postives = 102/156 (65.38%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D ++   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG E++D+ E L  +RA E F  D      NVQ  SGS +NF VYTALL+P D I+ ++L HGGHL+HG       ++     +  +PY ++E TG IDY++
Sbjct:   12 DADLWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEHVDIVEQLAIERAKELFGAD----YANVQPHSGSQANFAVYTALLQPGDTILGMNLAHGGHLTHG-----SPVNLSGKLYNVIPYGIDE-TGKIDYNE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_CLOK5 (Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.564e-33
Identity = 77/160 (48.12%), Postives = 99/160 (61.88%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L+  D +I  IIE E  RQ  G+ELI SENFTS SVM+A+GS +TNKY+EGYPG RYYGG   +D AE L + R  + F  +     VNVQ  SGS +N  VY ++LKP D ++ + L HGGHL+HG      K+S     +  + Y LN  T  IDYD+
Sbjct:    6 LKNTDKDIYGIIEEEWERQKNGIELIASENFTSKSVMEAMGSFLTNKYAEGYPGKRYYGGCYIVDKAEDLARDRMKKLFNAE----HVNVQPHSGSQANMAVYMSVLKPGDTVLGMSLNHGGHLTHG-----SKVSFSGKLYNFVSYGLNSDTEIIDYDE 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_CLOK1 (Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain NBRC 12016) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.564e-33
Identity = 77/160 (48.12%), Postives = 99/160 (61.88%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L+  D +I  IIE E  RQ  G+ELI SENFTS SVM+A+GS +TNKY+EGYPG RYYGG   +D AE L + R  + F  +     VNVQ  SGS +N  VY ++LKP D ++ + L HGGHL+HG      K+S     +  + Y LN  T  IDYD+
Sbjct:    6 LKNTDKDIYGIIEEEWERQKNGIELIASENFTSKSVMEAMGSFLTNKYAEGYPGKRYYGGCYIVDKAEDLARDRMKKLFNAE----HVNVQPHSGSQANMAVYMSVLKPGDTVLGMSLNHGGHLTHG-----SKVSFSGKLYNFVSYGLNSDTEIIDYDE 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_CHLCH (Serine hydroxymethyltransferase OS=Chlorobium chlorochromatii (strain CaD3) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.564e-33
Identity = 79/160 (49.38%), Postives = 103/160 (64.38%), Query Frame = 1
Query:  217 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            L+  D E+   I +E  RQ + LELI SENFTS +VMQA GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F  +     VNVQ  SGS +N  V  ++LKP D+IM LDL HGGHL+HG       ++     FE   Y ++  TG ID ++
Sbjct:    6 LQKQDAEVFASIANETKRQTETLELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDVAENLARDRAKKLFGCE----YVNVQPHSGSSANMAVLFSVLKPGDKIMGLDLSHGGHLTHG-----SSVNFSGQMFEAHSYGVDRETGCIDMNK 156          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_ACIRA (Serine hydroxymethyltransferase OS=Acinetobacter radioresistens GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.564e-33
Identity = 77/163 (47.24%), Postives = 99/163 (60.74%), Query Frame = 1
Query:  208 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            N  +   DPE+A  I +E ARQ   +ELI SEN+ S +VM+A GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  +GS +N  VY ALL P D ++ + L HGGHL+HG      K+S     +  + Y LN  TG IDY++
Sbjct:    4 NISIAEFDPELAQAITNEDARQEAHIELIASENYCSPAVMEAQGSKLTNKYAEGYPGKRYYGGCEYVDIIEQLAIDRAKELFGAD----YANVQPHAGSQANSAVYLALLNPGDTVLGMSLAHGGHLTHG-----AKVSFSGKTYNAIQYGLNPETGEIDYEE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SALTY (Serine hydroxymethyltransferase OS=Salmonella typhimurium GN=glyA PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.961e-33
Identity = 77/156 (49.36%), Postives = 100/156 (64.10%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L  GGHL+HG       ++     +  +PY ++ES G IDYD+
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHG-----SPVNFSGKLYNIVPYGIDES-GKIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SALTI (Serine hydroxymethyltransferase OS=Salmonella typhi GN=glyA PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.961e-33
Identity = 77/156 (49.36%), Postives = 100/156 (64.10%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L  GGHL+HG       ++     +  +PY ++ES G IDYD+
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHG-----SPVNFSGKLYNIVPYGIDES-GKIDYDE 157          
BLAST of FC868797 vs. ExPASy Swiss-Prot
Match: GLYA_SALSV (Serine hydroxymethyltransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.961e-33
Identity = 77/156 (49.36%), Postives = 100/156 (64.10%), Query Frame = 1
Query:  229 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 696
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L  GGHL+HG       ++     +  +PY ++ES G IDYD+
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHG-----SPVNFSGKLYNIVPYGIDES-GKIDYDE 157          
The following BLAST results are available for this feature:
BLAST of FC868797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_BACFN3.495e-3349.36Serine hydroxymethyltransferase OS=Bacteroides fra... [more]
GLYA_MYXXD4.564e-3348.75Serine hydroxymethyltransferase OS=Myxococcus xant... [more]
GLYA_ERWT94.564e-3348.72Serine hydroxymethyltransferase OS=Erwinia tasmani... [more]
GLYA_CLOK54.564e-3348.13Serine hydroxymethyltransferase OS=Clostridium klu... [more]
GLYA_CLOK14.564e-3348.13Serine hydroxymethyltransferase OS=Clostridium klu... [more]
GLYA_CHLCH4.564e-3349.38Serine hydroxymethyltransferase OS=Chlorobium chlo... [more]
GLYA_ACIRA4.564e-3347.24Serine hydroxymethyltransferase OS=Acinetobacter r... [more]
GLYA_SALTY5.961e-3349.36Serine hydroxymethyltransferase OS=Salmonella typh... [more]
GLYA_SALTI5.961e-3349.36Serine hydroxymethyltransferase OS=Salmonella typh... [more]
GLYA_SALSV5.961e-3349.36Serine hydroxymethyltransferase OS=Salmonella schw... [more]

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Properties
Property NameValue
Genbank descriptionC31004H06EF AbioticL1 Citrus clementina cDNA clone C31004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868797 ID=FC868797; Name=FC868797; organism=Citrus clementina; type=EST; length=697bp
AACAAAGAAGAAACAGAACAACATCTTGCAGCGGGAGAGTGAGAAGCAAA
AATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCCTCGACAAAC
CCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATGTCATCTTTG
CCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCACTTGGCCAAA
ACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTGCTGACATTA
TCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTCATTCCTTCA
GAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGAC
CAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACG
AGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCA
TTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGG
ATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATA
GGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTAT
CAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAAT
GCCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGT
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