FC868801

Overview
NameFC868801
Unique NameFC868801
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13865 contig Ccv1_Contig13865:27..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868801 vs. ExPASy Swiss-Prot
Match: ISPH_PROMA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus GN=ispH PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.770e-41
Identity = 79/156 (50.64%), Postives = 106/156 (67.95%), Query Frame = 1
Query:  247 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLK*QNVQIVDTTC 714
            D + F+ +L  SD YNRRGF    +  + + + Y S++I  +++NG+    G ++VKLAE++GFCWGVERAV +AYE R+ +P E IWITNEIIHNP+VN  L  M V+ I  E+G K F  V +GDVV+LPAFGA V EM  L  +   I+DTTC
Sbjct:    2 DTQAFKRSLHHSDRYNRRGFESPAKRAQALEKAYQSNLIASIRDNGYLLEHGRLRVKLAEAFGFCWGVERAVAMAYETRRHYPTESIWITNEIIHNPSVNDHLRNMNVRFISAEKGIKDFSSVEEGDVVILPAFGATVHEMKLLHERGCHIIDTTC 157          
BLAST of FC868801 vs. ExPASy Swiss-Prot
Match: ISPH_SYNY3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=ispH PE=3 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.169e-37
Identity = 73/128 (57.03%), Postives = 96/128 (75.00%), Query Frame = 1
Query:  331 LMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLK*QNVQIVDTTC 714
            +MN EY S +I+++++N +    G+V + LAE++GFCWGVERAV +AYE R+ FP +++WITNEIIHNP+VN+RL EM V  I V  G+K F  V KGDVV+LPAFGA+VEEM  L  +   IVDTTC
Sbjct:    3 VMNTEYQSHLIQEIRQNNYRLERGDVTILLAEAFGFCWGVERAVAMAYETRQHFPGDRLWITNEIIHNPSVNQRLREMEVNFIDVVNGEKDFSGVAKGDVVILPAFGASVEEMQLLNDRECTIVDTTC 130          
BLAST of FC868801 vs. ExPASy Swiss-Prot
Match: ISPH_GLOVI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Gloeobacter violaceus GN=ispH PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.595e-34
Identity = 70/150 (46.67%), Postives = 100/150 (66.67%), Query Frame = 1
Query:  277 RSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEG----KKQFDVVNKGDVVVLPAFGAAVEEMVTLK*QNVQIVDTTC 714
            +S NY R+GFG K E  + +  EY S +I +++ NG+    G V V+LAE++GFCWGV++AV +AYE  + F   ++WITNEIIHNP VN+ L  M ++ +  +E      K F+ V++ DVV+LPAFGA+ +EM  L  +N  IVDTTC
Sbjct:    2 QSKNYFRKGFGLKAEVQDDLKAEYESSLIHEIRANGYTLRRGGVTVRLAEAFGFCWGVDKAVSMAYETHRMFAGRQLWITNEIIHNPLVNQHLRAMGIRFLDEDESGRRVPKDFERVSEKDVVILPAFGASTQEMQILDEKNCVIVDTTC 151          
BLAST of FC868801 vs. ExPASy Swiss-Prot
Match: ISPH_THETN (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermoanaerobacter tengcongensis GN=ispH PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 39/103 (37.86%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  406 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLK*QNVQIVDTTC 714
            +++ +AE  GFC+GV+RA++IAYE   +  + +++   EIIHNP V K LEE  V+ I  EE +K    + KGD +++ + G + +    L+ + V+I+D TC
Sbjct:    1 MEILIAEHAGFCFGVKRAIEIAYEELNKQKDTRLYTLGEIIHNPQVVKDLEEKGVRVIEEEELEK----LLKGDRLIIRSHGISKKLYEFLEQKGVEIIDVTC 99          
BLAST of FC868801 vs. ExPASy Swiss-Prot
Match: ISPH_GEOSM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Geobacter sp. (strain M21) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 41/103 (39.81%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  406 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLK*QNVQIVDTTC 714
            ++V LA+  GFC+GV+RA Q+A+EA     E   +    IIH+P V +RLEEM V  IPVE+  +    V  G  +++ + G A EE+      N+++VD TC
Sbjct:    1 MQVILAKHAGFCFGVKRATQLAFEAADTGSE--TYTLGPIIHSPQVVQRLEEMGV--IPVEDVSE----VETGGTIIIRSHGVAAEELEAAVRANLEVVDATC 95          
The following BLAST results are available for this feature:
BLAST of FC868801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ISPH_PROMA2.770e-4150.644-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNY33.169e-3757.034-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GLOVI5.595e-3446.674-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THETN3.529e-1237.864-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GEOSM6.655e-1139.814-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC31004H11EF AbioticL1 Citrus clementina cDNA clone C31004H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868801 ID=FC868801; Name=FC868801; organism=Citrus clementina; type=EST; length=715bp
GATAGTTCATTCTCAGACTCCACTCTGTCCGCCAACTTTTGCGCCGTCTC
TTTCTCGCTGAATCCGTGAATCTCCCTCATCATGGCGACGACTCTGCAGT
TCTGCCGTGTTTGCGCGCGAACTGACATAGGTTCGCGCCATAATAATCGC
TCCGGAGCGCTGGCTCCGCCGCGCCGGAGGCCTGTGATCGTCAGGTGCTC
CGGTGAAAAATCGACGAGCTCGGCGGCGGCTATTGGTGCCGAATTTGACG
CGAAACTGTTTCGGCATAACTTGACGAGAAGTGATAATTACAATCGGAGA
GGATTTGGCCACAAGGAAGAGACTTTGGAGCTCATGAATCAGGAGTACAC
AAGTGATATTATAAAGAAATTGAAGGAGAATGGATTTGAGTATACTTGGG
GAAATGTTAAGGTGAAGCTGGCCGAATCATATGGCTTTTGCTGGGGAGTT
GAGCGTGCTGTGCAGATTGCTTATGAAGCAAGAAAACAGTTTCCCGAGGA
GAAGATCTGGATTACCAATGAAATCATACACAATCCAACTGTTAATAAGC
GGTTGGAGGAGATGGCAGTTCAAAATATACCTGTTGAGGAAGGAAAGAAG
CAATTTGATGTGGTAAATAAGGGTGATGTTGTGGTTTTGCCTGCATTTGG
GGCTGCAGTTGAAGAAATGGTGACTCTGAAATAACAGAATGTACAGATTG
TTGATACAACTTGCC
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