FC868806

Overview
NameFC868806
Unique NameFC868806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9817 contig Ccv1_Contig9817:5..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868806 vs. ExPASy Swiss-Prot
Match: DCAM_VICFA (S-adenosylmethionine decarboxylase proenzyme OS=Vicia faba GN=SAMDC PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 2.800e-12
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 3
Query:  522 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSK 635
            + VSAIGFEG+EKRLE+SF +PG+F+DP GRGLRSL+K
Sbjct:    1 MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTK 38          

HSP 2 Score: 29.261 bits (64), Expect = 2.800e-12
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  632 KTSLDEILKPAXCTIVS 682
            K+ LDEIL PA CTIVS
Sbjct:   38 KSQLDEILAPAECTIVS 54          
BLAST of FC868806 vs. ExPASy Swiss-Prot
Match: DCAM_PEA (S-adenosylmethionine decarboxylase proenzyme OS=Pisum sativum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 2.800e-12
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 3
Query:  522 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSK 635
            + VSAIGFEG+EKRLE+SF +PG+F+DP GRGLRSL+K
Sbjct:    1 MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTK 38          

HSP 2 Score: 29.261 bits (64), Expect = 2.800e-12
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  632 KTSLDEILKPAXCTIVS 682
            K+ LDEIL PA CTIVS
Sbjct:   38 KSQLDEILAPAECTIVS 54          
BLAST of FC868806 vs. ExPASy Swiss-Prot
Match: DCAM2_ARATH (S-adenosylmethionine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.341e-11
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 3
Query:  522 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSK 635
            + +SAIGFEGYEKRLEV+FFEPG+F D  G+GLR+L+K
Sbjct:    1 MAMSAIGFEGYEKRLEVTFFEPGLFLDTQGKGLRALAK 38          

HSP 2 Score: 29.261 bits (64), Expect = 1.341e-11
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2
Query:  632 KTSLDEILKPAXCTIVS 682
            K+ +DEIL+PA CTIVS
Sbjct:   38 KSQIDEILQPAECTIVS 54          
BLAST of FC868806 vs. ExPASy Swiss-Prot
Match: DCAM_DAUCA (S-adenosylmethionine decarboxylase proenzyme OS=Daucus carota GN=SAMDC PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.341e-11
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 3
Query:  516 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKH 638
            M+  VSAIGFEG+EKRLE+SFFEP  FADP G+GLR LSK+
Sbjct:    1 MSSEVSAIGFEGFEKRLEISFFEPSFFADPEGKGLRVLSKN 41          

HSP 2 Score: 25.7942 bits (55), Expect = 1.341e-11
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 2
Query:  632 KTSLDEILKPAXCTIVS 682
            K  LDE L PA CTIV+
Sbjct:   40 KNQLDEFLGPAECTIVA 56          
BLAST of FC868806 vs. ExPASy Swiss-Prot
Match: DCAM2_BRAJU (S-adenosylmethionine decarboxylase proenzyme 2 OS=Brassica juncea GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 2.932e-11
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 3
Query:  522 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSK 635
            + VSAIGFEGYEKRLEVSFFEP +F D  G+GLR+L K
Sbjct:    1 MSVSAIGFEGYEKRLEVSFFEPSLFVDTHGKGLRALPK 38          

HSP 2 Score: 28.4906 bits (62), Expect = 2.932e-11
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  632 KTSLDEILKPAXCTIVS 682
            K+ +DEIL PA CTIVS
Sbjct:   38 KSQIDEILAPAECTIVS 54          
BLAST of FC868806 vs. ExPASy Swiss-Prot
Match: DCAM_SPIOL (S-adenosylmethionine decarboxylase proenzyme OS=Spinacia oleracea GN=SAMDC PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 6.416e-11
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 3
Query:  522 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSK 635
            + +SAIGFEG+EKRLE++FFEP +F DP G+GLR+L K
Sbjct:    1 MAISAIGFEGFEKRLEITFFEPSIFVDPEGKGLRALCK 38          

HSP 2 Score: 26.9498 bits (58), Expect = 6.416e-11
Identity = 12/16 (75.00%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  632 KTSLDEILKPAXCTIV 679
            K  LDEIL PA CTIV
Sbjct:   38 KAQLDEILGPAECTIV 53          
The following BLAST results are available for this feature:
BLAST of FC868806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
DCAM_VICFA2.800e-1273.68S-adenosylmethionine decarboxylase proenzyme OS=Vi... [more]
DCAM_PEA2.800e-1273.68S-adenosylmethionine decarboxylase proenzyme OS=Pi... [more]
DCAM2_ARATH1.341e-1171.05S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM_DAUCA1.341e-1173.17S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM2_BRAJU2.932e-1173.68S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM_SPIOL6.416e-1165.79S-adenosylmethionine decarboxylase proenzyme OS=Sp... [more]

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Properties
Property NameValue
Genbank descriptionC31005A05EF AbioticL1 Citrus clementina cDNA clone C31005A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868806 ID=FC868806; Name=FC868806; organism=Citrus clementina; type=EST; length=682bp
GCGATAACGAAACGGACGGAAGGCGATCGAAATTCGTTTTGTGAAACAGA
GTGAAAAATCAACCCTTCTTTAATCCTCAAGGAATTTTATTATTTTCTTG
GTCTCTGAATCGAGGGTTTTGCTTCTTGGTTTAGTGGGTTTGTTTTCGTT
ATATTATCTGAGCACGGCTGAATGATCTAATGGAGTCAAAAGGTGGTAAG
AAGAAGTCTAGCAGTAGTTCCTTATTCTACGAAGCTCCTCTTGGTTACAG
CATTGAAGACGTTCGACCTCACGGTGGCATAAAGAAGTTCAGATCAGCTG
CATACTCAAACTGCGTCCGCAAACCATCCTGAGATCGTCCAATTTGTCCC
ATACCCCCCCAAAAAAAAGCTCACTACTACTGCAATTTTAATTTTTTTAG
TTTTAGCCGTCTTAATACTGCAATTTACTTGGCCTATTTCTTTTTCGACT
TCCCTCGTTCTCTCGTTCTGCCCTCTTTGCTCTTTGCAATTGTCATTTGT
TTTCTGTAAGGCAAGATGGCCTTGCCAGTCTCTGCAATTGGATTTGAAGG
TTATGAAAAGAGGCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTTTGCTG
ATCCTGGAGGTAGGGGCCTCCGCTCTCTGTCAAAACATCATTGGATGAAA
TACTGAAACCTGCGNAATGCACAATTGTTTCT
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