FC868814

Overview
NameFC868814
Unique NameFC868814
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7605 contig Ccv1_Contig7605:12..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC868814 vs. ExPASy Swiss-Prot
Match: ACR1_ACIAD (Fatty acyl-CoA reductase OS=Acinetobacter sp. (strain ADP1) GN=acr1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 45/170 (26.47%), Postives = 89/170 (52.35%), Query Frame = 3 
Query:   78 RTVLITGVSRGLGRALAQELAKRGHTVIGCSRTQDKLTSLQSELPNPDHHLFL-NVDIRSNSSVEELARLVVEKKGVPDIIVNNAGTINKN--NKIWDVSPEEFDTVIDTNVKGIANMLRHFIPLMIPIKQGIIVNMSSGWGRSGAALVAPYCASKWAVEGLSRSVAKEV 578
            +  LITG S G+G  +A+ +A  G  V+  +RTQ+ L  +++ +        +   D+   +++++L++ ++      D ++NNAG   +   ++ +D    +F+  +  N  G   ++ + +P MI  K G I+N+SS    + A   + Y ASK A++  SR ++ EV
Sbjct:   24 KVALITGASSGIGLTIAKRIAAAGAHVLLVARTQETLEEVKAAIEQQGGQASIFPCDLTDMNAIDQLSQQIMASVDHVDFLINNAGRSIRRAVHESFDRF-HDFERTMQLNYFGAVRLVLNLLPHMIKRKNGQIINISSIGVLANATRFSAYVASKAALDAFSRCLSAEV 192
The following BLAST results are available for this feature:
BLAST of FC868814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
ACR1_ACIAD8.094e-1126.47Fatty acyl-CoA reductase OS=Acinetobacter sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionC31005B02EF AbioticL1 Citrus clementina cDNA clone C31005B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868814 ID=FC868814; Name=FC868814; organism=Citrus clementina; type=EST; length=687bp
GGGGGAGAGGGAGGGAAATAACAATAACAACGATGGCAGCAACGACGCCG
TTTAACGGGATAGGGAAGAGCGTATCGCGAACAGTACTGATAACGGGAGT
GAGCAGAGGATTAGGGCGAGCCCTAGCTCAAGAGTTGGCCAAGCGCGGCC
ACACCGTGATCGGCTGCTCCCGCACTCAGGATAAGCTCACCTCCCTCCAA
TCAGAACTCCCTAATCCCGACCACCACCTCTTCCTCAATGTCGACATCAG
GTCAAATAGCAGTGTTGAAGAACTAGCACGTCTTGTCGTGGAGAAGAAAG
GCGTTCCTGATATTATAGTAAACAATGCAGGTACTATTAATAAAAATAAC
AAGATTTGGGATGTTTCGCCAGAAGAATTCGACACTGTTATTGATACTAA
TGTGAAAGGCATAGCAAATATGTTGCGTCACTTCATTCCTTTGATGATTC
CAATCAAGCAAGGGATTATCGTTAATATGTCTTCTGGTTGGGGAAGATCT
GGTGCTGCCCTGGTAGCACCTTATTGTGCTTCAAAATGGGCAGTTGAAGG
GTTGTCCAGATCAGTGGCAAAGGAGGTGCCTGATGGGATGGCAATTGTTG
CTTTAATCCTGGTGTTATTACACTGACATGCTTACGTCCTGCTTTGGCAC
TTCTGCTGCATCATACCAGCACCTGATGCATGGGCTT
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