FC868818

Overview
NameFC868818
Unique NameFC868818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13299 contig Ccv1_Contig13299:248..924. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868818 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 54/170 (31.76%), Postives = 77/170 (45.29%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNE---SVSWVTFHSAYDFGYLV 677
            EVW  N ++E   I   +     I++DTEFPG +    +D S             Y+ +K NVD  +LIQ+GLTL          G G      WE N  DF+ +       SI  L+  G+D ++ R+EG+      E  M    + NE    + WVTF  +YD  YL+
Sbjct:    4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDAS---------DEIRYRDMKFNVDNTHLIQLGLTL---------FGKGITK--TWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIG---IEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLL 150          
BLAST of FC868818 vs. ExPASy Swiss-Prot
Match: CAF1C_ARATH (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana GN=CAF1-3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.876e-12
Identity = 51/167 (30.54%), Postives = 71/167 (42.51%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLV 677
            EVW  N E E   I   +     I++DTEFPG +    +D S             Y+ +K NVD  +LIQ+G TL D  G              WE N  DFD         SI  L+  G++ ++ R+EG+    F           +  ++WV F  +YD  YLV
Sbjct:    8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDAS---------EEIRYRDMKFNVDNTHLIQLGFTLFDRRGFAK----------TWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLV 155          
BLAST of FC868818 vs. ExPASy Swiss-Prot
Match: CAF1D_ARATH (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana GN=CAF1-4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 49/167 (29.34%), Postives = 72/167 (43.11%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLV 677
            EVW  N E E + I   +  +  I++DTEFPG +    +D S             Y+ +K NVD  +LIQ+G TL D  G              WE N  DF+         SI  L+  G++ ++  +EG+    F           +  ++WV F  +YD  YLV
Sbjct:    3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDAS---------EEIRYRDMKFNVDNTHLIQLGFTLFDRRGITK----------TWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFFRDFSQILKEKDGKITWVNFQGSYDNAYLV 150          
The following BLAST results are available for this feature:
BLAST of FC868818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1E_ARATH1.697e-1331.76Probable CCR4-associated factor 1 homolog 5 OS=Ara... [more]
CAF1C_ARATH1.876e-1230.54Putative CCR4-associated factor 1 homolog 3 OS=Ara... [more]
CAF1D_ARATH7.130e-1229.34Putative CCR4-associated factor 1 homolog 4 OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31005B06EF AbioticL1 Citrus clementina cDNA clone C31005B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868818 ID=FC868818; Name=FC868818; organism=Citrus clementina; type=EST; length=677bp
GAACTCTCAAGCATCAGCAGTTTCCAGCAACAGTAAGGACTTTCAAATCT
CACCCACGAAGCGTCGAGCTGCAAGCTATTAGCTGACCATCATCACTCAT
CATGGGAGTTGAAGATTTTTCTACGGATTTAGATTCAAATTCAAATTCCA
GCTCATCGAATTCGATTATAATACGCGAAGTCTGGGCGTCTAATTTGGAA
TCCGAATTCGAACTCATCAGCCAAGTCATCGATCGGTACCCTTTTATTTC
CATGGACACCGAATTCCCCGGTCTTGTCTACCGACCCGATGTGGACCCCT
CCACCAGGCCTTACTTCCGTCAACGCAAGCCGTCCGATCACTACAAGGTT
CTGAAATCCAACGTCGACGCCTTGAACTTGATCCAGGTGGGCCTCACTCT
CTCTGACTCTTCCGGTAACTTGCCGGATTTGGGCTCCGGGGGCAACAATA
AATTCATCTGGGAGTTCAACTTCCGGGACTTCGATATCGCGACGGACGCC
CACGCGCCGGATTCGATAGAGCTGCTGAGACTGCAGGGGATTGACTTTGA
GCGCAACAGGAAGGAAGGCGTTGACTCGGTTCGGTTCGCCGAGTTGATGA
TGTCGTCGGGACTCGTCTGTAACGAATCGGTGAGTTGGGTCACGTTCCAC
AGCGCGTACGATTTCGGGTACCTGGTT
back to top