FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_ASPTN (ATP-dependent RNA helicase dbp4 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp4 PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.830e-29
Identity = 82/231 (35.50%), Postives = 132/231 (57.14%), Query Frame = 3
Query:   18 NGCYLTPNPRLP*TVRMESNPNKALTETRFSDLKPA--------LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            NG Y   + R     R++ + +  +      DLK +        LSEP L  L+ + ++  T +Q+  +      +D+   A TGSGKTLAF++P++E L R   A   H  +G +I+SPTREL+ QI+ V +  +       + L++GG  +K + +++ +   N+L+ TPGR+   +++  + D  NL++LVLDEADR++DMGFQK +  II  LPK R+T LFS+  T
Sbjct:    9 NGKYAKSSQRTLKRKRVQEDLSSLVQRVEDLDLKESFKAFTDLPLSEPTLSGLSASHYKTLTDIQSRAVSHALKGRDILGAAKTGSGKTLAFLIPVLENLYRKQWAE--HDGLGALILSPTRELAIQIFEVLRK-VGRYHHFSAGLVIGGKSLKEEQERLGK--MNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRIMDMGFQKTVDAIIGHLPKERQTMLFSATQT 234          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_PSYIN (ATP-dependent RNA helicase rhlB OS=Psychromonas ingrahamii (strain 37) GN=rhlB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.003e-29
Identity = 75/199 (37.69%), Postives = 125/199 (62.81%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSS 674
            LT+T+F+DL   L + ++  L   G+E+CTP+QA ++P+  + KD+A  A TG+GKTLAF+  +    +       R+ +Q   +I++PTREL+ QI+  A   ++++ +++  L  GG +V+    K+ E+G ++LIGT GR  D + +  V+D  +++ +VLDEADR+ D+GF K I Y+  R+P  K R   LFS+
Sbjct:    6 LTQTKFADLP--LEKSLISGLTSQGYEYCTPIQALSLPITLTGKDIAGQAQTGTGKTLAFLPAVFHHLLTNAQPENRRKNQPRAIILAPTRELAIQIHKDAM-VLASMSNLRLGLAYGGEKVEIQRTKL-EKGVDILIGTTGRTIDFV-KQGVIDMGSIQSVVLDEADRMFDLGFIKDIRYLFRRMPEAKSRLNMLFSA 199          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH48_ORYSJ (DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa subsp. japonica GN=Os02g0826100 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.003e-29
Identity = 76/209 (36.36%), Postives = 114/209 (54.55%), Query Frame = 3
Query:   63 RMESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQ---IMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFR--NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            R ES      T  RF +    +S   ++AL +AG+   T VQ   +P+    KDV V A TG+GK+ AF++P +E +  A  +   H+   I  +I+ PTREL+ Q+   A   +     +    L+GG   K D +++E +   +L+ TPGRL D +E       R   L++LVLDEAD LLD+GF+  I  I+  LP+ R+T LFS+
Sbjct:  330 RYESRGESLFTNKRFEEC--GISPLTVKALTDAGYVQTTVVQETALPMCLEGKDVLVKAKTGTGKSAAFLLPAIESVLNAMKSHTNHRVSPIFSLILCPTRELAIQLTAEANVLLKYHQGIGVQSLIGGTRFKLDQRRLESDPCQILVATPGRLLDHIENKSSFSVRLMGLKLLVLDEADHLLDLGFRTDIEKIVDSLPRQRQTLLFSA 536          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_CHAGB (ATP-dependent RNA helicase HAS1 OS=Chaetomium globosum GN=HAS1 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.003e-29
Identity = 83/204 (40.69%), Postives = 126/204 (61.76%), Query Frame = 3
Query:   78 PNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMI-ISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSSYST 683
            P+ +     FS+L   LS+  + ++ E GF   T +Q   IP L + KDV   A TGSGKTLAF++P +E+L   S   KP    G+I ++PTREL+ QI+ VA+  +        V ++GG  ++A+  K+  +G NLLI TPGRL D + R   + F+NL+ L++DEADR+L++GF+ ++ +I+  LPK  R+T LFS+  T
Sbjct:  105 PSVSTDAQAFSELN--LSDKTMMSINEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLN--SLRFKPRNGTGVIVVTPTRELALQIFGVARELMKNHSQTYGV-VIGGANIRAEEDKL-GKGVNLLIATPGRLLDHLRRGSFV-FKNLKSLIIDEADRILEVGFEDEMRHIVKILPKENRQTMLFSATQT 301          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_SERP5 (ATP-dependent RNA helicase rhlB OS=Serratia proteamaculans (strain 568) GN=rhlB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29
Identity = 83/199 (41.71%), Postives = 119/199 (59.80%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKL--RRTGLFSS 674
            LTE +FSD   AL   VLEAL + GF+ CTP+QA  +PL  S +DVA  A TG+GKTLAF+      L    A   RK +Q   +I++PTREL+ QI+  A+  +S    +K  L  GG      + K+ E G ++L+GT GRL D   + + +D   ++++VLDEADR+ D+GF K I ++  R+P +  R   LFS+
Sbjct:    6 LTEQKFSDF--ALHPLVLEALEKKGFQHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLTSTFHYLLSHPAKQDRKINQPRALIMAPTRELAVQIHSDAEA-LSQSTGLKMGLAYGGDGYDKQL-KVLESGVDILVGTTGRLID-YAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAVDQRLNMLFSA 199          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_HAES1 (ATP-dependent RNA helicase rhlB OS=Haemophilus somnus (strain 129Pt) GN=rhlB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29
Identity = 76/200 (38.00%), Postives = 122/200 (61.00%), Query Frame = 3
Query:   81 NKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISR--LPKLRRTGLFSS 674
            N  L++ RFSDL  AL   V +A+ E GFEFCTP+QA ++P+    +D+A  A TG+GKT+AF+      L + ++     Q   +I++PTREL  QI + A  F+     +K+ L  GG      +K I ++G ++LIGT GR+ D + +  ++    ++++VLDEADR+ D+GF + I Y++ +  +P+ R T LFS+
Sbjct:    3 NSHLSQQRFSDL--ALHRSVQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAFLTATFHHLLQKNNINSSEQPRALILAPTRELVVQIANDAN-FLVQATGLKTGLAYGGEGYDKQLKVI-DQGIDILIGTTGRVIDYV-KQGIIRLDYIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQQRLTMLFSA 197          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_ALISL (ATP-dependent RNA helicase rhlB OS=Aliivibrio salmonicida (strain LFI1238) GN=rhlB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29
Identity = 74/187 (39.57%), Postives = 116/187 (62.03%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644
            +TE +F+DL   L   VL+ L   GF  CTP+QA  +P+L + +D+A  A TG+GKTLAF+       +   A   RK  Q   +I++PTREL+ QIY+ A+  I++   +K+ L  GG   +   +K+ E G ++LIGT GR+ D  ++  + DF+ ++++VLDEADR+ D+GF K I ++  R+P
Sbjct:    6 ITEQKFADL--GLEPQVLDGLNAKGFINCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLAATFNHLLTTPAPEGRKITQPRAIIMAPTRELAIQIYNDAESLIAS-TGLKAALAYGGERYEKQ-QKVIEAGVDILIGTTGRIIDFYKQGQI-DFKAIQVVVLDEADRMFDLGFIKDIRFVFRRMP 187          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH25_ORYSJ (DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa subsp. japonica GN=Os01g0618400 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29
Identity = 74/200 (37.00%), Postives = 121/200 (60.50%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPH---QIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFR--NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            L++TRF      +S   L+A+ +AG+E  T VQ AT+P++   KDV   A TG+GKT+AF++P +E+L    ++R+      I  +++ PTREL+ Q+   A+  +     +   +++GG  +  + + ++     +L+ TPGRL D +E       R   +++LVLDEADRLLDMGF++ I  II+ +PK R+T LFS+
Sbjct:  123 LSDTRFDQC--TISPLSLKAVKDAGYERMTQVQEATLPVILQGKDVLAKAKTGTGKTVAFLLPAIEVLSALPNSRRDQLRPSINLLVMCPTRELAIQVAVEAKKLLKYHRSLGVQVVIGGTRLTQEQRSMQANPCQILVATPGRLKDHVENTPGFSTRLKGVKVLVLDEADRLLDMGFRRDIERIIASVPKERQTLLFSA 320          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_ASPNC (ATP-dependent RNA helicase drs1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=drs1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29
Identity = 81/205 (39.51%), Postives = 116/205 (56.59%), Query Frame = 3
Query:   69 ESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            E     A+ + + S  +  LS P+L  LA   F   TP+Q  TIP+    KD+   A TGSGKT AFVVP++E  R     RK       I+ PTREL+ Q Y+VA   ++T  D+    LVGG  ++ + + I ++  +++I TPGR  D M          LEILVLDEADR+L+ GF  +++ I++ +PK R+T LFS+  T
Sbjct:  297 EKTSESAMADAKRSFQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE--RLLFRPRKVPTSRVAILMPTRELAVQCYNVATK-LATYTDITFCQLVGGFSLR-EQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMT 497          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX27_DICDI (Probable ATP-dependent RNA helicase ddx27 OS=Dictyostelium discoideum GN=ddx27 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29
Identity = 78/184 (42.39%), Postives = 117/184 (63.59%), Query Frame = 3
Query:  126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            LS P+L+A+ + GF   TP+QA  IPL  + KD+   A+TGSGKT AF++P++E +L R S  R    I  +I+ PTREL+ Q   V +  ++   ++ S L+VGG+  KA   ++ +   +++I TPGRL D +     +   +LEIL+LDEADRLLDMGF+ +I+ I+   P  R+T LFS+
Sbjct:  197 LSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYRA---IRVLILLPTRELALQCQSVMEN-LAQFSNITSCLIVGGLSNKAQEVELRKS-PDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTMLFSA 375          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP4_ASPTN3.830e-2935.50ATP-dependent RNA helicase dbp4 OS=Aspergillus ter... [more]
RHLB_PSYIN5.003e-2937.69ATP-dependent RNA helicase rhlB OS=Psychromonas in... [more]
RH48_ORYSJ5.003e-2936.36DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sa... [more]
HAS1_CHAGB5.003e-2940.69ATP-dependent RNA helicase HAS1 OS=Chaetomium glob... [more]
RHLB_SERP56.534e-2941.71ATP-dependent RNA helicase rhlB OS=Serratia protea... [more]
RHLB_HAES16.534e-2938.00ATP-dependent RNA helicase rhlB OS=Haemophilus som... [more]
RHLB_ALISL6.534e-2939.57ATP-dependent RNA helicase rhlB OS=Aliivibrio salm... [more]
RH25_ORYSJ6.534e-2937.00DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sa... [more]
DRS1_ASPNC6.534e-2939.51ATP-dependent RNA helicase drs1 OS=Aspergillus nig... [more]
DDX27_DICDI6.534e-2942.39Probable ATP-dependent RNA helicase ddx27 OS=Dicty... [more]

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Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
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