FC868819
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_ASPTN (ATP-dependent RNA helicase dbp4 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp4 PE=3 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 3.830e-29 Identity = 82/231 (35.50%), Postives = 132/231 (57.14%), Query Frame = 3 Query: 18 NGCYLTPNPRLP*TVRMESNPNKALTETRFSDLKPA--------LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 NG Y + R R++ + + + DLK + LSEP L L+ + ++ T +Q+ + +D+ A TGSGKTLAF++P++E L R A H +G +I+SPTREL+ QI+ V + + + L++GG +K + +++ + N+L+ TPGR+ +++ + D NL++LVLDEADR++DMGFQK + II LPK R+T LFS+ T Sbjct: 9 NGKYAKSSQRTLKRKRVQEDLSSLVQRVEDLDLKESFKAFTDLPLSEPTLSGLSASHYKTLTDIQSRAVSHALKGRDILGAAKTGSGKTLAFLIPVLENLYRKQWAE--HDGLGALILSPTRELAIQIFEVLRK-VGRYHHFSAGLVIGGKSLKEEQERLGK--MNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRIMDMGFQKTVDAIIGHLPKERQTMLFSATQT 234
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_PSYIN (ATP-dependent RNA helicase rhlB OS=Psychromonas ingrahamii (strain 37) GN=rhlB PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.003e-29 Identity = 75/199 (37.69%), Postives = 125/199 (62.81%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSS 674 LT+T+F+DL L + ++ L G+E+CTP+QA ++P+ + KD+A A TG+GKTLAF+ + + R+ +Q +I++PTREL+ QI+ A ++++ +++ L GG +V+ K+ E+G ++LIGT GR D + + V+D +++ +VLDEADR+ D+GF K I Y+ R+P K R LFS+ Sbjct: 6 LTQTKFADLP--LEKSLISGLTSQGYEYCTPIQALSLPITLTGKDIAGQAQTGTGKTLAFLPAVFHHLLTNAQPENRRKNQPRAIILAPTRELAIQIHKDAM-VLASMSNLRLGLAYGGEKVEIQRTKL-EKGVDILIGTTGRTIDFV-KQGVIDMGSIQSVVLDEADRMFDLGFIKDIRYLFRRMPEAKSRLNMLFSA 199
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH48_ORYSJ (DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa subsp. japonica GN=Os02g0826100 PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.003e-29 Identity = 76/209 (36.36%), Postives = 114/209 (54.55%), Query Frame = 3 Query: 63 RMESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQ---IMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFR--NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 R ES T RF + +S ++AL +AG+ T VQ +P+ KDV V A TG+GK+ AF++P +E + A + H+ I +I+ PTREL+ Q+ A + + L+GG K D +++E + +L+ TPGRL D +E R L++LVLDEAD LLD+GF+ I I+ LP+ R+T LFS+ Sbjct: 330 RYESRGESLFTNKRFEEC--GISPLTVKALTDAGYVQTTVVQETALPMCLEGKDVLVKAKTGTGKSAAFLLPAIESVLNAMKSHTNHRVSPIFSLILCPTRELAIQLTAEANVLLKYHQGIGVQSLIGGTRFKLDQRRLESDPCQILVATPGRLLDHIENKSSFSVRLMGLKLLVLDEADHLLDLGFRTDIEKIVDSLPRQRQTLLFSA 536
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_CHAGB (ATP-dependent RNA helicase HAS1 OS=Chaetomium globosum GN=HAS1 PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.003e-29 Identity = 83/204 (40.69%), Postives = 126/204 (61.76%), Query Frame = 3 Query: 78 PNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMI-ISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSSYST 683 P+ + FS+L LS+ + ++ E GF T +Q IP L + KDV A TGSGKTLAF++P +E+L S KP G+I ++PTREL+ QI+ VA+ + V ++GG ++A+ K+ +G NLLI TPGRL D + R + F+NL+ L++DEADR+L++GF+ ++ +I+ LPK R+T LFS+ T Sbjct: 105 PSVSTDAQAFSELN--LSDKTMMSINEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLN--SLRFKPRNGTGVIVVTPTRELALQIFGVARELMKNHSQTYGV-VIGGANIRAEEDKL-GKGVNLLIATPGRLLDHLRRGSFV-FKNLKSLIIDEADRILEVGFEDEMRHIVKILPKENRQTMLFSATQT 301
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_SERP5 (ATP-dependent RNA helicase rhlB OS=Serratia proteamaculans (strain 568) GN=rhlB PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29 Identity = 83/199 (41.71%), Postives = 119/199 (59.80%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKL--RRTGLFSS 674 LTE +FSD AL VLEAL + GF+ CTP+QA +PL S +DVA A TG+GKTLAF+ L A RK +Q +I++PTREL+ QI+ A+ +S +K L GG + K+ E G ++L+GT GRL D + + +D ++++VLDEADR+ D+GF K I ++ R+P + R LFS+ Sbjct: 6 LTEQKFSDF--ALHPLVLEALEKKGFQHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLTSTFHYLLSHPAKQDRKINQPRALIMAPTRELAVQIHSDAEA-LSQSTGLKMGLAYGGDGYDKQL-KVLESGVDILVGTTGRLID-YAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAVDQRLNMLFSA 199
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_HAES1 (ATP-dependent RNA helicase rhlB OS=Haemophilus somnus (strain 129Pt) GN=rhlB PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29 Identity = 76/200 (38.00%), Postives = 122/200 (61.00%), Query Frame = 3 Query: 81 NKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISR--LPKLRRTGLFSS 674 N L++ RFSDL AL V +A+ E GFEFCTP+QA ++P+ +D+A A TG+GKT+AF+ L + ++ Q +I++PTREL QI + A F+ +K+ L GG +K I ++G ++LIGT GR+ D + + ++ ++++VLDEADR+ D+GF + I Y++ + +P+ R T LFS+ Sbjct: 3 NSHLSQQRFSDL--ALHRSVQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAFLTATFHHLLQKNNINSSEQPRALILAPTRELVVQIANDAN-FLVQATGLKTGLAYGGEGYDKQLKVI-DQGIDILIGTTGRVIDYV-KQGIIRLDYIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQQRLTMLFSA 197
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_ALISL (ATP-dependent RNA helicase rhlB OS=Aliivibrio salmonicida (strain LFI1238) GN=rhlB PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29 Identity = 74/187 (39.57%), Postives = 116/187 (62.03%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644 +TE +F+DL L VL+ L GF CTP+QA +P+L + +D+A A TG+GKTLAF+ + A RK Q +I++PTREL+ QIY+ A+ I++ +K+ L GG + +K+ E G ++LIGT GR+ D ++ + DF+ ++++VLDEADR+ D+GF K I ++ R+P Sbjct: 6 ITEQKFADL--GLEPQVLDGLNAKGFINCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLAATFNHLLTTPAPEGRKITQPRAIIMAPTRELAIQIYNDAESLIAS-TGLKAALAYGGERYEKQ-QKVIEAGVDILIGTTGRIIDFYKQGQI-DFKAIQVVVLDEADRMFDLGFIKDIRFVFRRMP 187
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH25_ORYSJ (DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa subsp. japonica GN=Os01g0618400 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29 Identity = 74/200 (37.00%), Postives = 121/200 (60.50%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPH---QIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFR--NLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 L++TRF +S L+A+ +AG+E T VQ AT+P++ KDV A TG+GKT+AF++P +E+L ++R+ I +++ PTREL+ Q+ A+ + + +++GG + + + ++ +L+ TPGRL D +E R +++LVLDEADRLLDMGF++ I II+ +PK R+T LFS+ Sbjct: 123 LSDTRFDQC--TISPLSLKAVKDAGYERMTQVQEATLPVILQGKDVLAKAKTGTGKTVAFLLPAIEVLSALPNSRRDQLRPSINLLVMCPTRELAIQVAVEAKKLLKYHRSLGVQVVIGGTRLTQEQRSMQANPCQILVATPGRLKDHVENTPGFSTRLKGVKVLVLDEADRLLDMGFRRDIERIIASVPKERQTLLFSA 320
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_ASPNC (ATP-dependent RNA helicase drs1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=drs1 PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29 Identity = 81/205 (39.51%), Postives = 116/205 (56.59%), Query Frame = 3 Query: 69 ESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 E A+ + + S + LS P+L LA F TP+Q TIP+ KD+ A TGSGKT AFVVP++E R RK I+ PTREL+ Q Y+VA ++T D+ LVGG ++ + + I ++ +++I TPGR D M LEILVLDEADR+L+ GF +++ I++ +PK R+T LFS+ T Sbjct: 297 EKTSESAMADAKRSFQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE--RLLFRPRKVPTSRVAILMPTRELAVQCYNVATK-LATYTDITFCQLVGGFSLR-EQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMT 497
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX27_DICDI (Probable ATP-dependent RNA helicase ddx27 OS=Dictyostelium discoideum GN=ddx27 PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29 Identity = 78/184 (42.39%), Postives = 117/184 (63.59%), Query Frame = 3 Query: 126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 LS P+L+A+ + GF TP+QA IPL + KD+ A+TGSGKT AF++P++E +L R S R I +I+ PTREL+ Q V + ++ ++ S L+VGG+ KA ++ + +++I TPGRL D + + +LEIL+LDEADRLLDMGF+ +I+ I+ P R+T LFS+ Sbjct: 197 LSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYRA---IRVLILLPTRELALQCQSVMEN-LAQFSNITSCLIVGGLSNKAQEVELRKS-PDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTMLFSA 375 The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bpback to top |