FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_NEOFI (ATP-dependent RNA helicase dbp4 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp4 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29
Identity = 81/194 (41.75%), Postives = 119/194 (61.34%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            FSDL   LSEP    LA + ++  T +Q+  I      +DV   A TGSGKTLAF+VP++E L R   A   H  +G +I+SPTREL+ QI+ V +  I       + L++GG  +K + +++     N+L+ TPGR+   +++  + D  NL++LVLDEADR+LD+GFQ+ +  II  LPK R+T LFS+  T
Sbjct:   49 FSDLP--LSEPTASGLASSHYKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLENLYRKQWAE--HDGLGALILSPTRELAIQIFEVLRK-IGRYHTFSAGLVIGGKSLKEEQERLGR--MNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIIGHLPKERQTLLFSATQT 235          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_KLULA (ATP-dependent RNA helicase DBP4 OS=Kluyveromyces lactis GN=DBP4 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29
Identity = 86/202 (42.57%), Postives = 117/202 (57.92%), Query Frame = 3
Query:   69 ESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            E NP K      F DL   +SE  L+ L EA F   T +Q  +IPL     DV   A TGSGKTLAF++P++E L R         +  +IISPTREL+ QIY V    I       + L++GG +V  + ++I     N+LIGTPGR+   M++    +  NL++LVLDEADR LDMGF++ +  II+ LP  R+T LFS+
Sbjct:   32 EYNP-KIAKANLFQDLP--ISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDG-LGALIISPTRELAMQIYEVLSK-IGKHTTFSAGLVIGGKDVTFEKERISR--INILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFSA 226          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_ASPCL (ATP-dependent RNA helicase dbp4 OS=Aspergillus clavatus GN=dbp4 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29
Identity = 80/194 (41.24%), Postives = 119/194 (61.34%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            FSDL   LSEP L  L  + F+  T +Q+  I      +DV   A TGSGKTLAF+VP++E L R   A   H  +G +I+SPTREL+ QI+ V +  I       + L++GG  ++ + +++     N+L+ TPGR+   +++  + D  NL++LVLDEADR+LD+GFQ+ +  I+  LPK R+T LFS+  T
Sbjct:   51 FSDLP--LSEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLENLYRRQWAE--HDGLGALILSPTRELAIQIFEVLRK-IGRYHTFSAGLVIGGKSLREEQERLGR--MNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIVGHLPKERQTLLFSATQT 237          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_YERPY (ATP-dependent RNA helicase rhlB OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rhlB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 81/199 (40.70%), Postives = 120/199 (60.30%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKL--RRTGLFSS 674
            LTE +FSD   AL   V+EAL   GF++CTP+QA  +PL  S +DVA  A TG+GKTLAF+      L    A   R+ +Q   +I++PTREL+ QI+  A+  +S +  +K  L  GG      + K+ E G ++LIGT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P +  R   LFS+
Sbjct:    6 LTEQKFSDF--ALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAES-LSQVTGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSA 199          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_YERPS (ATP-dependent RNA helicase rhlB OS=Yersinia pseudotuberculosis GN=rhlB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 81/199 (40.70%), Postives = 120/199 (60.30%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKL--RRTGLFSS 674
            LTE +FSD   AL   V+EAL   GF++CTP+QA  +PL  S +DVA  A TG+GKTLAF+      L    A   R+ +Q   +I++PTREL+ QI+  A+  +S +  +K  L  GG      + K+ E G ++LIGT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P +  R   LFS+
Sbjct:    6 LTEQKFSDF--ALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAES-LSQVTGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSA 199          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_YERPP (ATP-dependent RNA helicase rhlB OS=Yersinia pestis (strain Pestoides F) GN=rhlB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 81/199 (40.70%), Postives = 120/199 (60.30%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKL--RRTGLFSS 674
            LTE +FSD   AL   V+EAL   GF++CTP+QA  +PL  S +DVA  A TG+GKTLAF+      L    A   R+ +Q   +I++PTREL+ QI+  A+  +S +  +K  L  GG      + K+ E G ++LIGT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P +  R   LFS+
Sbjct:    6 LTEQKFSDF--ALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAES-LSQVTGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSA 199          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_YERPN (ATP-dependent RNA helicase rhlB OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rhlB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 81/199 (40.70%), Postives = 120/199 (60.30%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKL--RRTGLFSS 674
            LTE +FSD   AL   V+EAL   GF++CTP+QA  +PL  S +DVA  A TG+GKTLAF+      L    A   R+ +Q   +I++PTREL+ QI+  A+  +S +  +K  L  GG      + K+ E G ++LIGT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P +  R   LFS+
Sbjct:    6 LTEQKFSDF--ALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAES-LSQVTGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSA 199          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_YERPE (ATP-dependent RNA helicase rhlB OS=Yersinia pestis GN=rhlB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 81/199 (40.70%), Postives = 120/199 (60.30%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKL--RRTGLFSS 674
            LTE +FSD   AL   V+EAL   GF++CTP+QA  +PL  S +DVA  A TG+GKTLAF+      L    A   R+ +Q   +I++PTREL+ QI+  A+  +S +  +K  L  GG      + K+ E G ++LIGT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P +  R   LFS+
Sbjct:    6 LTEQKFSDF--ALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAES-LSQVTGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSA 199          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_YERPB (ATP-dependent RNA helicase rhlB OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rhlB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 81/199 (40.70%), Postives = 120/199 (60.30%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKL--RRTGLFSS 674
            LTE +FSD   AL   V+EAL   GF++CTP+QA  +PL  S +DVA  A TG+GKTLAF+      L    A   R+ +Q   +I++PTREL+ QI+  A+  +S +  +K  L  GG      + K+ E G ++LIGT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P +  R   LFS+
Sbjct:    6 LTEQKFSDF--ALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAES-LSQVTGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSA 199          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_YERPA (ATP-dependent RNA helicase rhlB OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rhlB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 81/199 (40.70%), Postives = 120/199 (60.30%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKL--RRTGLFSS 674
            LTE +FSD   AL   V+EAL   GF++CTP+QA  +PL  S +DVA  A TG+GKTLAF+      L    A   R+ +Q   +I++PTREL+ QI+  A+  +S +  +K  L  GG      + K+ E G ++LIGT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P +  R   LFS+
Sbjct:    6 LTEQKFSDF--ALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAES-LSQVTGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSA 199          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP4_NEOFI6.534e-2941.75ATP-dependent RNA helicase dbp4 OS=Neosartorya fis... [more]
DBP4_KLULA6.534e-2942.57ATP-dependent RNA helicase DBP4 OS=Kluyveromyces l... [more]
DBP4_ASPCL6.534e-2941.24ATP-dependent RNA helicase dbp4 OS=Aspergillus cla... [more]
RHLB_YERPY8.533e-2940.70ATP-dependent RNA helicase rhlB OS=Yersinia pseudo... [more]
RHLB_YERPS8.533e-2940.70ATP-dependent RNA helicase rhlB OS=Yersinia pseudo... [more]
RHLB_YERPP8.533e-2940.70ATP-dependent RNA helicase rhlB OS=Yersinia pestis... [more]
RHLB_YERPN8.533e-2940.70ATP-dependent RNA helicase rhlB OS=Yersinia pestis... [more]
RHLB_YERPE8.533e-2940.70ATP-dependent RNA helicase rhlB OS=Yersinia pestis... [more]
RHLB_YERPB8.533e-2940.70ATP-dependent RNA helicase rhlB OS=Yersinia pseudo... [more]
RHLB_YERPA8.533e-2940.70ATP-dependent RNA helicase rhlB OS=Yersinia pestis... [more]

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Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
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