FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_YERP3 (ATP-dependent RNA helicase rhlB OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rhlB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 81/199 (40.70%), Postives = 120/199 (60.30%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKL--RRTGLFSS 674
            LTE +FSD   AL   V+EAL   GF++CTP+QA  +PL  S +DVA  A TG+GKTLAF+      L    A   R+ +Q   +I++PTREL+ QI+  A+  +S +  +K  L  GG      + K+ E G ++LIGT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P +  R   LFS+
Sbjct:    6 LTEQKFSDF--ALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAES-LSQVTGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSA 199          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_PASMU (ATP-dependent RNA helicase rhlB OS=Pasteurella multocida GN=rhlB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 78/200 (39.00%), Postives = 121/200 (60.50%), Query Frame = 3
Query:   81 NKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISR--LPKLRRTGLFSS 674
            N  L++ RFSDL   L   VL AL E GF++CTP+QA ++P+  + KDVA  A TG+GKT+AF+      L      +   Q   +I++PTREL+ QI + A   ++    +K+ L  GG   +  +K I E+G ++LIGT GR+ D + +  ++    ++++VLDEADR+ D+GF K I Y++ +   P+ R T LFS+
Sbjct:    3 NNYLSQLRFSDLP--LHHQVLAALQEKGFDYCTPIQALSLPMSLAGKDVAGQAQTGTGKTMAFLTATFHHLLTQQGDKGGRQPRALILAPTRELAVQINNDA-ALLTKATGLKTGLAYGGDGYEKQLKAI-EQGVDILIGTTGRVIDYV-KQGIVRLDKIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPQHRLTMLFSA 197          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_ACTSZ (ATP-dependent RNA helicase rhlB OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rhlB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 78/197 (39.59%), Postives = 117/197 (59.39%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISR--LPKLRRTGLFSS 674
            L++ RF+DL   L   +L AL +  FE+CTP+QA ++PL    KDVA  A TG+GKT+AF+      L         +Q   +I++PTREL+ QI H A+    T   ++  L  GG      +K I E G ++LIGT GR+ D + +  ++ F +++++VLDEADR+ D+GF K I Y++ +   PK R T LFS+
Sbjct:    6 LSQQRFADLP--LHPQILAALNDQNFEYCTPIQALSLPLTLQGKDVAGQAQTGTGKTMAFLTATFHHLLTHQPDFITNQPRALILAPTRELAVQIAHDAESLAQT-TKLRIALAYGGDGYDKQLKTI-ENGVDILIGTTGRVIDYV-KQGIIRFNDIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPKSRLTMLFSA 197          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_LODEL (ATP-dependent RNA helicase DRS1 OS=Lodderomyces elongisporus GN=DRS1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 71/197 (36.04%), Postives = 123/197 (62.44%), Query Frame = 3
Query:   87 ALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRR-TGLFSS 674
            AL    F +L+  LS P+L++L + GF   TPVQA+TIP+    KD+   A TGSGKT A+++P++E L    ++     I   I++PTREL+ Q++ V +     + ++   + VGG+ +K   ++++    +++I TPGRL D +         ++++L++DEADR+L+ GFQ++++ I+S +PK +R T LFS+
Sbjct:  192 ALKSKTFQELQ--LSRPILKSLQQLGFTVPTPVQASTIPIALLGKDIVASAQTGSGKTAAYLIPIIERLLYVKNSTSTKAI---ILTPTRELAIQVHDVGRKLGQFVSNLNFGMAVGGLSLKQQEQQLKTR-PDIVIATPGRLIDHIRNSPSFSVEDVQVLIIDEADRMLEEGFQEELTEILSLIPKQKRQTLLFSA 382          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_CHAGB (ATP-dependent RNA helicase DRS1 OS=Chaetomium globosum GN=DRS1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 77/187 (41.18%), Postives = 111/187 (59.36%), Query Frame = 3
Query:  123 ALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            +LS P+L  L   GF   TP+QA TIP+    KDV   A TGSGKT AFVVP++E  R     +K      ++++PTREL+ Q + VA   +++  D+K  L VGG+ +K    ++     +++I TPGR  D M          +EILVLDEADR+L+ GF  +++ I++ LPK R+T LFS+  T
Sbjct:  282 SLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPILE--RLLYRPKKVPTTRVVVLTPTRELAIQCHSVATK-LASHTDIKFCLAVGGLSLKVQEGELRLR-PDVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFSATMT 464          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_ASPCL (ATP-dependent RNA helicase drs1 OS=Aspergillus clavatus GN=drs1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 82/205 (40.00%), Postives = 115/205 (56.10%), Query Frame = 3
Query:   69 ESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            E    +  ++  F D    LS P+L  LA   F   TP+Q  TIP+    KD+   A TGSGKT AFVVP++E  R     RK       I+ PTREL+ Q Y+VA   ++T  DV    LVGG  ++ + + I ++  +++I TPGR  D M          LEILVLDEADR+L+ GF  +++ I++ +PK R+T LFS+  T
Sbjct:  296 EKTTEEPTSKRSFQDFN--LSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE--RLLFRPRKVPTSRVAILMPTRELAVQCYNVATK-LATHTDVTFCQLVGGFSLR-EQENILKKRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMT 494          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX10_HUMAN (Probable ATP-dependent RNA helicase DDX10 OS=Homo sapiens GN=DDX10 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 82/195 (42.05%), Postives = 115/195 (58.97%), Query Frame = 3
Query:   99 TRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            TRFSD    LS+  L+ L EA +   T +Q  TI L    KDV   A TGSGKTLAF+VP++E L R         +  +IISPTREL+ Q + V +  +    D  + L++GG ++K + ++I     N+L+ TPGRL   M+        +L++LVLDEADR+LDMGF   ++ +I  LPK R+T LFS+  T
Sbjct:   69 TRFSDFP--LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT-STDGLGVLIISPTRELAYQTFEVLRK-VGKNHDFSAGLIIGGKDLKHEAERINN--INILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQT 257          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_ASPFU (ATP-dependent RNA helicase dbp4 OS=Aspergillus fumigatus GN=dbp4 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 80/194 (41.24%), Postives = 119/194 (61.34%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            FSDL   LSEP    LA + ++  T +Q+  I      +D+   A TGSGKTLAF+VP++E L R   A   H  +G +I+SPTREL+ QI+ V +  I       + L++GG  +K + +++     N+L+ TPGR+   +++  + D  NL++LVLDEADR+LD+GFQ+ +  II  LPK R+T LFS+  T
Sbjct:   49 FSDLP--LSEPTASGLASSHYKTLTDIQSRAISHALKGRDILGAAKTGSGKTLAFLVPVLENLYRKQWAE--HDGLGALILSPTRELAIQIFEVLRK-IGRYHTFSAGLVIGGKSLKEEQERLGR--MNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIIGHLPKERQTLLFSATQT 235          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH27_ARATH (DEAD-box ATP-dependent RNA helicase 27 OS=Arabidopsis thaliana GN=RH27 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.114e-28
Identity = 79/196 (40.31%), Postives = 116/196 (59.18%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            +T   F  L  +LS+   +++ E GF   T +QA  IP L   +DV   A TGSGKTLAF++P VE+L R      P    G ++I PTREL+ Q Y VA+  +         + +GG + K + + I  +G NLL+ TPGRL D +E  +   F+NL+ LV+DEADR+L+  F++ +  I++ LPK R+T LFS+
Sbjct:  151 MTNKTFESL--SLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFT--PRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKV-IGGEKRKTEAE-ILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSA 340          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX18_DROME (Probable ATP-dependent RNA helicase pitchoune OS=Drosophila melanogaster GN=pit PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.114e-28
Identity = 75/194 (38.66%), Postives = 120/194 (61.86%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            F+ LK A+SE  L A+ E GF   T +Q+ ++  L   +D+   A TGSGKTLAF++P VE++ +      P    G+II SPTRELS Q + V +  ++        L++GG   + + +K+ + G N+L+ TPGRL D ++      ++NL+ L++DE DR+L++GF++++  II+ LPK R+T LFS+  T
Sbjct:  187 FASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFM--PRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYG-LVMGGSNRQVESEKLGK-GINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQT 376          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_YERP38.533e-2940.70ATP-dependent RNA helicase rhlB OS=Yersinia pseudo... [more]
RHLB_PASMU8.533e-2939.00ATP-dependent RNA helicase rhlB OS=Pasteurella mul... [more]
RHLB_ACTSZ8.533e-2939.59ATP-dependent RNA helicase rhlB OS=Actinobacillus ... [more]
DRS1_LODEL8.533e-2936.04ATP-dependent RNA helicase DRS1 OS=Lodderomyces el... [more]
DRS1_CHAGB8.533e-2941.18ATP-dependent RNA helicase DRS1 OS=Chaetomium glob... [more]
DRS1_ASPCL8.533e-2940.00ATP-dependent RNA helicase drs1 OS=Aspergillus cla... [more]
DDX10_HUMAN8.533e-2942.05Probable ATP-dependent RNA helicase DDX10 OS=Homo ... [more]
DBP4_ASPFU8.533e-2941.24ATP-dependent RNA helicase dbp4 OS=Aspergillus fum... [more]
RH27_ARATH1.114e-2840.31DEAD-box ATP-dependent RNA helicase 27 OS=Arabidop... [more]
DDX18_DROME1.114e-2838.66Probable ATP-dependent RNA helicase pitchoune OS=D... [more]

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Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
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