FC868819
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_YERP3 (ATP-dependent RNA helicase rhlB OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rhlB PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29 Identity = 81/199 (40.70%), Postives = 120/199 (60.30%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKL--RRTGLFSS 674 LTE +FSD AL V+EAL GF++CTP+QA +PL S +DVA A TG+GKTLAF+ L A R+ +Q +I++PTREL+ QI+ A+ +S + +K L GG + K+ E G ++LIGT GRL D + + ++ ++++VLDEADR+ D+GF K I ++ R+P + R LFS+ Sbjct: 6 LTEQKFSDF--ALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAES-LSQVTGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSA 199
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_PASMU (ATP-dependent RNA helicase rhlB OS=Pasteurella multocida GN=rhlB PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29 Identity = 78/200 (39.00%), Postives = 121/200 (60.50%), Query Frame = 3 Query: 81 NKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISR--LPKLRRTGLFSS 674 N L++ RFSDL L VL AL E GF++CTP+QA ++P+ + KDVA A TG+GKT+AF+ L + Q +I++PTREL+ QI + A ++ +K+ L GG + +K I E+G ++LIGT GR+ D + + ++ ++++VLDEADR+ D+GF K I Y++ + P+ R T LFS+ Sbjct: 3 NNYLSQLRFSDLP--LHHQVLAALQEKGFDYCTPIQALSLPMSLAGKDVAGQAQTGTGKTMAFLTATFHHLLTQQGDKGGRQPRALILAPTRELAVQINNDA-ALLTKATGLKTGLAYGGDGYEKQLKAI-EQGVDILIGTTGRVIDYV-KQGIVRLDKIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPQHRLTMLFSA 197
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_ACTSZ (ATP-dependent RNA helicase rhlB OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rhlB PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29 Identity = 78/197 (39.59%), Postives = 117/197 (59.39%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISR--LPKLRRTGLFSS 674 L++ RF+DL L +L AL + FE+CTP+QA ++PL KDVA A TG+GKT+AF+ L +Q +I++PTREL+ QI H A+ T ++ L GG +K I E G ++LIGT GR+ D + + ++ F +++++VLDEADR+ D+GF K I Y++ + PK R T LFS+ Sbjct: 6 LSQQRFADLP--LHPQILAALNDQNFEYCTPIQALSLPLTLQGKDVAGQAQTGTGKTMAFLTATFHHLLTHQPDFITNQPRALILAPTRELAVQIAHDAESLAQT-TKLRIALAYGGDGYDKQLKTI-ENGVDILIGTTGRVIDYV-KQGIIRFNDIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPKSRLTMLFSA 197
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_LODEL (ATP-dependent RNA helicase DRS1 OS=Lodderomyces elongisporus GN=DRS1 PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29 Identity = 71/197 (36.04%), Postives = 123/197 (62.44%), Query Frame = 3 Query: 87 ALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRR-TGLFSS 674 AL F +L+ LS P+L++L + GF TPVQA+TIP+ KD+ A TGSGKT A+++P++E L ++ I I++PTREL+ Q++ V + + ++ + VGG+ +K ++++ +++I TPGRL D + ++++L++DEADR+L+ GFQ++++ I+S +PK +R T LFS+ Sbjct: 192 ALKSKTFQELQ--LSRPILKSLQQLGFTVPTPVQASTIPIALLGKDIVASAQTGSGKTAAYLIPIIERLLYVKNSTSTKAI---ILTPTRELAIQVHDVGRKLGQFVSNLNFGMAVGGLSLKQQEQQLKTR-PDIVIATPGRLIDHIRNSPSFSVEDVQVLIIDEADRMLEEGFQEELTEILSLIPKQKRQTLLFSA 382
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_CHAGB (ATP-dependent RNA helicase DRS1 OS=Chaetomium globosum GN=DRS1 PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29 Identity = 77/187 (41.18%), Postives = 111/187 (59.36%), Query Frame = 3 Query: 123 ALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 +LS P+L L GF TP+QA TIP+ KDV A TGSGKT AFVVP++E R +K ++++PTREL+ Q + VA +++ D+K L VGG+ +K ++ +++I TPGR D M +EILVLDEADR+L+ GF +++ I++ LPK R+T LFS+ T Sbjct: 282 SLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPILE--RLLYRPKKVPTTRVVVLTPTRELAIQCHSVATK-LASHTDIKFCLAVGGLSLKVQEGELRLR-PDVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFSATMT 464
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_ASPCL (ATP-dependent RNA helicase drs1 OS=Aspergillus clavatus GN=drs1 PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29 Identity = 82/205 (40.00%), Postives = 115/205 (56.10%), Query Frame = 3 Query: 69 ESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 E + ++ F D LS P+L LA F TP+Q TIP+ KD+ A TGSGKT AFVVP++E R RK I+ PTREL+ Q Y+VA ++T DV LVGG ++ + + I ++ +++I TPGR D M LEILVLDEADR+L+ GF +++ I++ +PK R+T LFS+ T Sbjct: 296 EKTTEEPTSKRSFQDFN--LSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE--RLLFRPRKVPTSRVAILMPTRELAVQCYNVATK-LATHTDVTFCQLVGGFSLR-EQENILKKRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMT 494
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX10_HUMAN (Probable ATP-dependent RNA helicase DDX10 OS=Homo sapiens GN=DDX10 PE=1 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29 Identity = 82/195 (42.05%), Postives = 115/195 (58.97%), Query Frame = 3 Query: 99 TRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 TRFSD LS+ L+ L EA + T +Q TI L KDV A TGSGKTLAF+VP++E L R + +IISPTREL+ Q + V + + D + L++GG ++K + ++I N+L+ TPGRL M+ +L++LVLDEADR+LDMGF ++ +I LPK R+T LFS+ T Sbjct: 69 TRFSDFP--LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT-STDGLGVLIISPTRELAYQTFEVLRK-VGKNHDFSAGLIIGGKDLKHEAERINN--INILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQT 257
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_ASPFU (ATP-dependent RNA helicase dbp4 OS=Aspergillus fumigatus GN=dbp4 PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29 Identity = 80/194 (41.24%), Postives = 119/194 (61.34%), Query Frame = 3 Query: 105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 FSDL LSEP LA + ++ T +Q+ I +D+ A TGSGKTLAF+VP++E L R A H +G +I+SPTREL+ QI+ V + I + L++GG +K + +++ N+L+ TPGR+ +++ + D NL++LVLDEADR+LD+GFQ+ + II LPK R+T LFS+ T Sbjct: 49 FSDLP--LSEPTASGLASSHYKTLTDIQSRAISHALKGRDILGAAKTGSGKTLAFLVPVLENLYRKQWAE--HDGLGALILSPTRELAIQIFEVLRK-IGRYHTFSAGLVIGGKSLKEEQERLGR--MNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIIGHLPKERQTLLFSATQT 235
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH27_ARATH (DEAD-box ATP-dependent RNA helicase 27 OS=Arabidopsis thaliana GN=RH27 PE=2 SV=2) HSP 1 Score: 126.716 bits (317), Expect = 1.114e-28 Identity = 79/196 (40.31%), Postives = 116/196 (59.18%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 +T F L +LS+ +++ E GF T +QA IP L +DV A TGSGKTLAF++P VE+L R P G ++I PTREL+ Q Y VA+ + + +GG + K + + I +G NLL+ TPGRL D +E + F+NL+ LV+DEADR+L+ F++ + I++ LPK R+T LFS+ Sbjct: 151 MTNKTFESL--SLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFT--PRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKV-IGGEKRKTEAE-ILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSA 340
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX18_DROME (Probable ATP-dependent RNA helicase pitchoune OS=Drosophila melanogaster GN=pit PE=2 SV=2) HSP 1 Score: 126.716 bits (317), Expect = 1.114e-28 Identity = 75/194 (38.66%), Postives = 120/194 (61.86%), Query Frame = 3 Query: 105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 F+ LK A+SE L A+ E GF T +Q+ ++ L +D+ A TGSGKTLAF++P VE++ + P G+II SPTRELS Q + V + ++ L++GG + + +K+ + G N+L+ TPGRL D ++ ++NL+ L++DE DR+L++GF++++ II+ LPK R+T LFS+ T Sbjct: 187 FASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFM--PRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYG-LVMGGSNRQVESEKLGK-GINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQT 376 The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bpback to top |