FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX10_CHICK (Probable ATP-dependent RNA helicase DDX10 OS=Gallus gallus GN=DDX10 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.114e-28
Identity = 82/194 (42.27%), Postives = 114/194 (58.76%), Query Frame = 3
Query:  102 RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            RFSD    LS+  L+ L EA +   T +Q  TI L    KDV   A TGSGKTLAF+VP +E+L R         +  +IISPTREL+ Q + V +  +    D  + L++GG ++K + ++I     N+LI TPGRL   M+        +L++L+LDEADR+LDMGF   ++ II  LPK R+T LFS+  T
Sbjct:   74 RFSDFP--LSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALELLYRLQWT-SADGLGVLIISPTRELAFQTFKVLRK-VGKNHDFSAGLIIGGKDLKEESERIHH--INMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQT 261          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_PICST (ATP-dependent RNA helicase DBP4 OS=Pichia stipitis GN=DBP4 PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.114e-28
Identity = 76/192 (39.58%), Postives = 116/192 (60.42%), Query Frame = 3
Query:   99 TRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            ++FSDL   +++  L  L E+ F   T +Q  TIP+    +D+   A TGSGKTLAF++P+VE L R +   +   +  +I+SPTREL+ Q + V    I       + L+ GG +V+ + +++     N+L+GTPGR+   +     ++  NL++LVLDEADR LDMGF+KQI  I+  LP  R+T LFS+
Sbjct:   47 SQFSDLP--ITQETLRGLNESSFMSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVVESLIR-NKITEHDGLAALIVSPTRELAVQTFEVLTK-IGKYNTFSAGLVTGGKDVQYEKERVSR--MNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNIVGHLPPTRQTLLFSA 232          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_ERWCT (ATP-dependent RNA helicase rhlB OS=Erwinia carotovora subsp. atroseptica GN=rhlB PE=3 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.456e-28
Identity = 77/187 (41.18%), Postives = 115/187 (61.50%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644
            LTE +FSD   AL   V+EAL   GF +CTP+QA  +PL  S +DVA  A TG+GKTLAF+      L    A++ R+ +Q   +I++PTREL+ QI+  A+  +S L  +K  L  GG      + K+ E G ++L+GT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P
Sbjct:    6 LTEQKFSDF--ALHPQVIEALESKGFHYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEA-LSHLTGLKLGLAYGGDGYDKQL-KVLENGVDILVGTTGRLID-YAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMP 187          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_USTMA (ATP-dependent RNA helicase HAS1 OS=Ustilago maydis GN=HAS1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.456e-28
Identity = 78/188 (41.49%), Postives = 117/188 (62.23%), Query Frame = 3
Query:  126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSSYST 683
            LSEP  +A+   GF+  T VQA  IP L + KDV   A TGSGKTL+F++P +E+L R     KP    G +IISPTREL+ QI+ VA+  ++       +++ GG   +A+  K+ ++G NL++ TPGRL D ++      F NL+ L +DEADR+L++GF+ ++  I+  LP   R++ LFS+  T
Sbjct:   57 LSEPTRKAIDAMGFKTMTEVQARCIPPLMAGKDVLGAAQTGSGKTLSFLIPAIEMLHRLKF--KPRNGTGAIIISPTRELALQIFGVAKELMAHHHQTFGIIM-GGANRRAEADKL-QKGVNLIVATPGRLLDHLQNTKGFVFSNLKALCIDEADRILEIGFEDEMRQIVKILPNDNRQSMLFSATQT 240          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_EMENI (ATP-dependent RNA helicase dbp4 OS=Emericella nidulans GN=dbp4 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.456e-28
Identity = 85/208 (40.87%), Postives = 124/208 (59.62%), Query Frame = 3
Query:   63 RMESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            R+E    KA  E+ FSDL   +SEP L  L  + F+  T +Q+  I      +DV   A TGSGKTLAF+VP++E L R   +   H  +G +IISPTREL+ QI+ V +  I       + L++GG  +K + +++     N+L+ TPGR+   +++    +  NL++LVLDEADR++DMGFQK +  II  LP  R+T LFS+  T
Sbjct:   37 RVEDLDLKAKYES-FSDLP--ISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILENLYRKQWS--DHDGLGALIISPTRELAIQIFEVLRK-IGRYHTFSAGLVIGGKSLKEEQERLGR--MNILVCTPGRMLQHLDQTAFFETYNLQMLVLDEADRIMDMGFQKTVDAIIGHLPPERQTLLFSATQT 236          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_HAES2 (ATP-dependent RNA helicase rhlB OS=Haemophilus somnus (strain 2336) GN=rhlB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 76/200 (38.00%), Postives = 121/200 (60.50%), Query Frame = 3
Query:   81 NKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISR--LPKLRRTGLFSS 674
            N  L++ RFSDL  AL   V +A+ E GFEFCTP+QA ++P+    +D+A  A TG+GKT+AF+      L + ++     Q   +I++PTREL  QI + A  F+     +K+ L  GG      +K I + G ++LIGT GR+ D + +  ++    ++++VLDEADR+ D+GF + I Y++ +  +P+ R T LFS+
Sbjct:    3 NSHLSQQRFSDL--ALHRIVQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAFLTATFHHLLQKNNINSSEQPRALILAPTRELVVQIANDAN-FLVQATGLKTGLAYGGEGYDKQLKVI-DRGIDILIGTTGRVIDYV-KQGIIRLDYIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQQRLTMLFSA 197          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_ENT38 (ATP-dependent RNA helicase rhlB OS=Enterobacter sp. (strain 638) GN=rhlB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 77/187 (41.18%), Postives = 113/187 (60.43%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644
            LTE +FSD   AL   V+EAL   GF +CTP+QA  +PL  + +DVA  A TG+GKT+AF+      L    A + RK +Q   +I++PTREL+ QI+  A+P   T   +K  L  GG      + K+ E G ++LIGT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P
Sbjct:    6 LTEQKFSDF--ALHAKVIEALENKGFHYCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSAFHYLLSNPAMADRKVNQPRALIMAPTRELAVQIHADAEPLAQT-TGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMP 187          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_ASHGO (ATP-dependent RNA helicase HAS1 OS=Ashbya gossypii GN=HAS1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 82/196 (41.84%), Postives = 122/196 (62.24%), Query Frame = 3
Query:  102 RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMI-ISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683
            +F +L   LS   L+A+ + GF   T VQA TIP L + +DV   A TGSGKTLAF++P +E+L   S   KP    G+I I+PTREL+ QI+ VA+  +        ++ +GG   + + +K+ + G NLLI TPGRL D ++      F+NL+ LV+DEADR+L++GF+ ++  II  LP + R++ LFS+  T
Sbjct:   40 KFDELN--LSSQTLKAIGKMGFTKMTQVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPAIEMLH--SLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIV-IGGANRRQEAEKLAK-GVNLLIATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEDEMKQIIKILPNEDRQSMLFSATQT 229          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_YARLI (ATP-dependent RNA helicase DRS1 OS=Yarrowia lipolytica GN=DRS1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 71/202 (35.15%), Postives = 121/202 (59.90%), Query Frame = 3
Query:   69 ESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            E+N         F  L   LS PV++ ++  G++  TP+Q+ TIP+    KD+   A TGSGKT A+++P++E L   SS     +++  +++PTRELS Q+  V +     +  V+  L VGG+ ++   ++++     ++I TPGR  D +      +  ++EILV+DEADR+L+ GFQ++++ I++ LPK R+T LFS+
Sbjct:  242 ENNDKTESVHKTFQTLN--LSRPVMKGISALGYQAPTPIQSRTIPIALMGKDLVAGAVTGSGKTAAYIIPVLERLLYKSSKVAATKVV--VLTPTRELSIQVADVGKKLAQYVSGVRFGLAVGGLNLRVQEQELKTR-PEVVIATPGRFIDHVRNSPSFNVDDVEILVIDEADRMLEEGFQQELTEILTLLPKKRQTLLFSA 438          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_MAGGR (ATP-dependent RNA helicase DRS1 OS=Magnaporthe grisea GN=DRS1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 77/187 (41.18%), Postives = 111/187 (59.36%), Query Frame = 3
Query:  123 ALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            +LS P+L  L   GF   TP+Q+ TIP+    KDV   A TGSGKT AFVVP++E  R     +K      +I++PTREL+ Q + VA   +++  D+K  L VGG+ +K    ++     +++I TPGR  D M          +EILVLDEADR+L+ GF  +++ I++ LPK R+T LFS+  T
Sbjct:  261 SLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILE--RLLYRPKKVPTSRVVILAPTRELAIQCHAVATK-LASHTDIKFCLAVGGLSLKVQESELRLR-PDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFSATMT 443          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX10_CHICK1.114e-2842.27Probable ATP-dependent RNA helicase DDX10 OS=Gallu... [more]
DBP4_PICST1.114e-2839.58ATP-dependent RNA helicase DBP4 OS=Pichia stipitis... [more]
RHLB_ERWCT1.456e-2841.18ATP-dependent RNA helicase rhlB OS=Erwinia carotov... [more]
HAS1_USTMA1.456e-2841.49ATP-dependent RNA helicase HAS1 OS=Ustilago maydis... [more]
DBP4_EMENI1.456e-2840.87ATP-dependent RNA helicase dbp4 OS=Emericella nidu... [more]
RHLB_HAES21.901e-2838.00ATP-dependent RNA helicase rhlB OS=Haemophilus som... [more]
RHLB_ENT381.901e-2841.18ATP-dependent RNA helicase rhlB OS=Enterobacter sp... [more]
HAS1_ASHGO1.901e-2841.84ATP-dependent RNA helicase HAS1 OS=Ashbya gossypii... [more]
DRS1_YARLI1.901e-2835.15ATP-dependent RNA helicase DRS1 OS=Yarrowia lipoly... [more]
DRS1_MAGGR1.901e-2841.18ATP-dependent RNA helicase DRS1 OS=Magnaporthe gri... [more]

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Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
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