FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9404 contig Ccv1_Contig9404:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_ASPFU (ATP-dependent RNA helicase drs1 OS=Aspergillus fumigatus GN=drs1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 78/186 (41.94%), Postives = 109/186 (58.60%), Query Frame = 3
Query:  126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            LS P+L  LA   F   TP+Q  TIP+    KD+   A TGSGKT AFVVP++E  R     RK       I+ PTREL+ Q Y+VA   ++T  D+    LVGG  ++ + + I ++  +++I TPGR  D M          LEILVLDEADR+L+ GF  +++ I++ +PK R+T LFS+  T
Sbjct:  317 LSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE--RLLFRPRKVPTSRVAILMPTRELAVQCYNVATK-LATHTDITFCQLVGGFSLR-EQENILKKRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMT 498          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_ASPTN (ATP-dependent RNA helicase drs1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=drs1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.483e-28
Identity = 78/186 (41.94%), Postives = 109/186 (58.60%), Query Frame = 3
Query:  126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            LS P+L  LA   F   TP+Q  TIP+    KD+   A TGSGKT AFVVP++E  R     RK       I+ PTREL+ Q Y+VA   ++T  D+    LVGG  ++ + + I ++  +++I TPGR  D M          LEILVLDEADR+L+ GF  +++ I++ +PK R+T LFS+  T
Sbjct:  311 LSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE--RLLFRPRKVPTSRVAILMPTRELAVQCYNVATK-LATYTDITFCQLVGGFSLR-EQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMT 492          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_ASPOR (ATP-dependent RNA helicase drs1 OS=Aspergillus oryzae GN=drs1 PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.483e-28
Identity = 78/186 (41.94%), Postives = 109/186 (58.60%), Query Frame = 3
Query:  126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            LS P+L  LA   F   TP+Q  TIP+    KD+   A TGSGKT AFVVP++E  R     RK       I+ PTREL+ Q Y+VA   ++T  D+    LVGG  ++ + + I ++  +++I TPGR  D M          LEILVLDEADR+L+ GF  +++ I++ +PK R+T LFS+  T
Sbjct:  309 LSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE--RLLFRPRKVPTSRVAILMPTRELAVQCYNVATK-LATYTDITFCQLVGGFSLR-EQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFSATMT 490          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX10_DICDI (Probable ATP-dependent RNA helicase ddx10 OS=Dictyostelium discoideum GN=ddx10 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.483e-28
Identity = 80/195 (41.03%), Postives = 117/195 (60.00%), Query Frame = 3
Query:   99 TRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            T F DL   +S+  L+AL E+ F   T +Q A++P     +D+   A TGSGKTL+F++P++E L R    R    I  +++SPTREL+ QI+ V +  +       + L++GG  V+ +  KI     N+LI TPGRL   M+     D  NL+ILVLDEADR+LD+GF K ++ I+  LP+ R+T LFS+  T
Sbjct:  141 TDFKDLP--ISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGAAKTGSGKTLSFILPILETLWRNRWGRDDG-IGAIVLSPTRELAIQIFDVLKA-VGKYHTFSAGLIIGGRNVQQEKDKIN--AMNILIATPGRLLQHMDETYGFDCSNLKILVLDEADRILDLGFSKCLNSIVENLPRERQTLLFSATQT 329          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_ASPNC (ATP-dependent RNA helicase dbp4 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp4 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.483e-28
Identity = 76/198 (38.38%), Postives = 120/198 (60.61%), Query Frame = 3
Query:   93 TETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            T  +F+DL   LSEP    LA + ++  T +Q+  I      +D+   A TGSGKTLAF++P++E L R   +   H  +G +++SPTREL+ QI+ V +  +       + L++GG  ++ + +++     N+L+ TPGR+   +++    +  NL++LVLDEADR+LDMGFQK +  II  LPK R+T LFS+  T
Sbjct:   45 TIEQFTDLP--LSEPTASGLASSHYKTLTDIQSRAISHALKGRDILGAAKTGSGKTLAFLIPILENLYRKQWSE--HDGLGALVLSPTRELAIQIFEVLRK-VGRYHTFSAGLVIGGKSLREEQERLGR--MNILVCTPGRMLQHLDQTSFFETHNLQMLVLDEADRILDMGFQKTVDAIIGHLPKERQTLLFSATQT 235          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RRP3_ASPOR (ATP-dependent rRNA helicase rrp3 OS=Aspergillus oryzae GN=rrp3 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.243e-28
Identity = 78/208 (37.50%), Postives = 119/208 (57.21%), Query Frame = 3
Query:   51 P*TVRMESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            P T   E  P++A  +   S  +  L E + EA    G++  T +QA  IPL    +D+   A TGSGKT AF +P+++ L       KP    G++++PTREL+ QI    +   ST+  V+S +LVGG+++ +    + ++  ++++ TPGRL D +E       RNL+ LV+DEADRLLDM F   +  I+  LP+ RRT LFS+
Sbjct:   34 PNTTEQEQEPSEAPKQAPKSFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMD-----KPSSFFGLVLAPTRELAYQISQAFEGLGSTI-SVRSTVLVGGMDMVSQSIALGKK-PHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVLPRERRTYLFSA 234          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_VIBCM (ATP-dependent RNA helicase rhlB OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rhlB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.243e-28
Identity = 74/199 (37.19%), Postives = 121/199 (60.80%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFSS 674
            +TE +F+D    L   V++ L + GF +CTP+QA  +P+L S +D+A  A TG+GKTLAF+       +   A+  R   Q   +I++PTREL+ QI++ A+P +++   +K+ L  GG      + K+ + G ++LIGT GR+ D  ++  V +  +++ +VLDEADR+ D+GF K I ++  R+  PK R   LFS+
Sbjct:    6 ITEHKFADF--GLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLAS-TGLKAALAYGGESYDKQLAKL-QSGVDILIGTTGRIIDFYKQR-VFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSA 199          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_VIBCH (ATP-dependent RNA helicase rhlB OS=Vibrio cholerae GN=rhlB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.243e-28
Identity = 74/199 (37.19%), Postives = 121/199 (60.80%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFSS 674
            +TE +F+D    L   V++ L + GF +CTP+QA  +P+L S +D+A  A TG+GKTLAF+       +   A+  R   Q   +I++PTREL+ QI++ A+P +++   +K+ L  GG      + K+ + G ++LIGT GR+ D  ++  V +  +++ +VLDEADR+ D+GF K I ++  R+  PK R   LFS+
Sbjct:    6 ITEHKFADF--GLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLAS-TGLKAALAYGGESYDKQLAKL-QSGVDILIGTTGRIIDFYKQR-VFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSA 199          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_VIBC3 (ATP-dependent RNA helicase rhlB OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rhlB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.243e-28
Identity = 74/199 (37.19%), Postives = 121/199 (60.80%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFSS 674
            +TE +F+D    L   V++ L + GF +CTP+QA  +P+L S +D+A  A TG+GKTLAF+       +   A+  R   Q   +I++PTREL+ QI++ A+P +++   +K+ L  GG      + K+ + G ++LIGT GR+ D  ++  V +  +++ +VLDEADR+ D+GF K I ++  R+  PK R   LFS+
Sbjct:    6 ITEHKFADF--GLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLAS-TGLKAALAYGGESYDKQLAKL-QSGVDILIGTTGRIIDFYKQR-VFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSA 199          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_PSEA6 (ATP-dependent RNA helicase rhlB OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rhlB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.243e-28
Identity = 73/186 (39.25%), Postives = 115/186 (61.83%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK 647
            LTET F+DL   ++E V++AL+ A F  CTP+QA ++P L    D+A  A TG+GKT+AF+V     L       K  Q   +I++PTREL+ QI++ A+  +S    +   L+ GG   ++  +K+ EEG +++IGT GR+ D   + ++     +++ VLDEADR+ D+GF K I Y+ +R+PK
Sbjct:    6 LTETHFADLP--INEQVVKALSAANFSHCTPIQALSLPPLLEGNDIAGQAQTGTGKTIAFLVATFHYLLSNPQPTK-KQPRAIIMAPTRELAVQIFNDAE-LLSQHTGLSLGLIYGGEGYQSQREKL-EEGVDIIIGTTGRIIDYY-KQNIFSLAGIQVAVLDEADRMFDLGFIKDIRYLFNRMPK 185          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DRS1_ASPFU1.901e-2841.94ATP-dependent RNA helicase drs1 OS=Aspergillus fum... [more]
DRS1_ASPTN2.483e-2841.94ATP-dependent RNA helicase drs1 OS=Aspergillus ter... [more]
DRS1_ASPOR2.483e-2841.94ATP-dependent RNA helicase drs1 OS=Aspergillus ory... [more]
DDX10_DICDI2.483e-2841.03Probable ATP-dependent RNA helicase ddx10 OS=Dicty... [more]
DBP4_ASPNC2.483e-2838.38ATP-dependent RNA helicase dbp4 OS=Aspergillus nig... [more]
RRP3_ASPOR3.243e-2837.50ATP-dependent rRNA helicase rrp3 OS=Aspergillus or... [more]
RHLB_VIBCM3.243e-2837.19ATP-dependent RNA helicase rhlB OS=Vibrio cholerae... [more]
RHLB_VIBCH3.243e-2837.19ATP-dependent RNA helicase rhlB OS=Vibrio cholerae... [more]
RHLB_VIBC33.243e-2837.19ATP-dependent RNA helicase rhlB OS=Vibrio cholerae... [more]
RHLB_PSEA63.243e-2839.25ATP-dependent RNA helicase rhlB OS=Pseudoalteromon... [more]

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Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
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