FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_NEOFI (ATP-dependent RNA helicase drs1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=drs1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.243e-28
Identity = 83/206 (40.29%), Postives = 115/206 (55.83%), Query Frame = 3
Query:   69 ESNPNKALTETR-FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            E     A T  R F D    LS P+L  LA   F   TP+Q  TIP+    KD+   A TGSGKT AFVVP++E  R     RK       I+ PTREL+ Q Y+VA   ++T  D+    LVGG  ++ + + I ++  +++I TPGR  D M          LEILVLDEADR+L+ GF  +++ I++ +P+ R+T LFS+  T
Sbjct:  288 EEKSTAASTSNRSFQDFN--LSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILE--RLLFRPRKVPTSRVAILMPTRELAVQCYNVATK-LATHTDITFCQLVGGFSLR-EQENILKKRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPQSRQTMLFSATMT 487          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_COCIM (ATP-dependent RNA helicase DRS1 OS=Coccidioides immitis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.243e-28
Identity = 80/206 (38.83%), Postives = 117/206 (56.80%), Query Frame = 3
Query:   69 ESNPNKALTETRFSDLKPA-LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            E NP K+   +  S  +   LS P+L  LA  GF   TP+Q   IP+    KD+   A TGSGKT AF++P++E  R     RK       I+ PTREL+ Q Y+VA   ++T  D+    LVGG  ++ + + + ++  +++I TPGR  D M          LEILVLDEADR+L+ GF  +++ I++ +PK R+T LFS+  T
Sbjct:  306 EENPTKSEETSSNSTFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGSGKTAAFIIPILE--RLLYRPRKVPTSRVAILMPTRELAVQCYNVATK-LATYTDITFCQLVGGFSLR-EQENVLKQRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILNTIPKSRQTMLFSATMT 507          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_BOTFB (ATP-dependent RNA helicase drs1 OS=Botryotinia fuckeliana (strain B05.10) GN=drs1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.243e-28
Identity = 77/184 (41.85%), Postives = 109/184 (59.24%), Query Frame = 3
Query:  123 ALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            +LS P+L  LA  GF   TP+Q+ TIP+    KDV   A TGSGKT AFVVP++E  R     +K       I+ PTREL+ Q + VA   +++  D+K  L VGG+ +K    ++     +++I TPGR  D M          LEILVLDEADR+L+ GF  +++ I++ +PK R+T LFS+
Sbjct:  274 SLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFVVPVLE--RLLYRPKKVPTSRVAILMPTRELAIQCHAVATK-LASHTDIKFCLAVGGLSLKVQEAELRLR-PDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEILTTIPKSRQTMLFSA 453          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_SODGM (ATP-dependent RNA helicase rhlB OS=Sodalis glossinidius (strain morsitans) GN=rhlB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28
Identity = 74/187 (39.57%), Postives = 113/187 (60.43%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644
            LTE +FSD   AL  P++E L   GF  CTP+QA T+P   + KDVA  A TG+GKTLAF+       +   A+  R+ +Q   +I++PTREL+ QI+  A+P ++    +K  L  GG      + K+ E G ++L+GT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P
Sbjct:    6 LTEKKFSDF--ALYPPIVEVLDSKGFNNCTPIQALTLPTTLAGKDVAGQAQTGTGKTLAFLTATFHHLLTHPAAEGRQTNQPRALIMAPTRELAVQIHSDAEP-LAQATGLKMGLAYGGDGYDKQL-KVLEAGVDILVGTTGRLID-YTKQNYVNMSAIQVVVLDEADRMFDLGFIKDIRWLFRRMP 187          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH51_ARATH (DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis thaliana GN=RH51 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28
Identity = 78/199 (39.20%), Postives = 120/199 (60.30%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMI-ISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            +T   F  L   LSE    A+ E GF++ T +QA +I  L   KDV   A TGSGKTLAF++P VE+L +   +  P    G+I I PTREL+ Q  +VA+  +       S +++GG   +++ ++I   G+NL+I TPGRL D ++      +++L+ LV+DEADR+L+  F++ ++ I+  LPK R+T LFS+  T
Sbjct:   86 MTNVTFDSLD--LSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFS--PRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVS-MVIGGNNRRSEAQRIAS-GSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQT 278          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH40_ARATH (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28
Identity = 71/183 (38.80%), Postives = 112/183 (61.20%), Query Frame = 3
Query:  126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            L   +L  L  AGF   TP+QA T P+    +D+   A TGSGKTL +++P   +LR   +  +    + +I++PTREL++QI   A  F      +    L GG      +K++E  GA++++ TPGRL DI+E M ++DF+ + +LVLDEADR+LDMGF+ QI  I++ +P  R+T ++++
Sbjct:  442 LPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTV-LILAPTRELATQIQDEALRF-GRSSRISCTCLYGGAPKGPQLKELER-GADIVVATPGRLNDILE-MKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTA 620          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_GIBZE (ATP-dependent RNA helicase HAS1 OS=Gibberella zeae GN=HAS1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28
Identity = 86/217 (39.63%), Postives = 130/217 (59.91%), Query Frame = 3
Query:   39 NPRLP*TVRMESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMI-ISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSSYST 683
            N  LP   ++   P        F +LK  LSE  ++A+ E  F   T +Q   IP   + +DV   A TGSGKTLAF++P++E+L  +S   KP    G+I +SPTREL+ QI+ VA+  ++       + ++GG   +A+ +K+  +G NLLI TPGRL D ++    + F+NL+ LV+DEADR+L++GF+ ++  II  LPK  R+T LFS+  T
Sbjct:   95 NTDLPNGGQLTLPPVAGAEAQSFEELK--LSEKTMKAINEMKFTKMTEIQRRGIPPSLAGRDVLGAAKTGSGKTLAFLIPVIEML--SSLRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGI-VIGGANRRAEAEKL-AKGVNLLIATPGRLLDHLQNTPFV-FKNLKSLVIDEADRILEIGFEDEMRQIIKVLPKEDRQTMLFSATQT 304          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_SCLS1 (ATP-dependent RNA helicase drs1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=drs1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28
Identity = 76/184 (41.30%), Postives = 109/184 (59.24%), Query Frame = 3
Query:  123 ALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            +LS P+L  LA  GF   TP+Q+ TIP+    KDV   A TGSGKT AF+VP++E  R     +K       I+ PTREL+ Q + VA   +++  D+K  L VGG+ +K    ++     +++I TPGR  D M          LEILVLDEADR+L+ GF  +++ I++ +PK R+T LFS+
Sbjct:  274 SLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFIVPVLE--RLLYRPKKVPTSRVAILMPTRELAIQCHAVATK-LASHTDIKFCLAVGGLSLKVQEAELRLR-PDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEILTTIPKSRQTMLFSA 453          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_CANAL (ATP-dependent RNA helicase DRS1 OS=Candida albicans GN=DRS1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28
Identity = 75/204 (36.76%), Postives = 129/204 (63.24%), Query Frame = 3
Query:   69 ESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSS 674
            ES+P +  T T F  L+  LS PVL+ +AE  F   TP+Q+A+IP+    KD+   A TGSGKT A+++P++E +L + S++ K      +I++PTREL+ Q+Y   +     + ++   L VGG+ ++   ++++    +++I TPGRL D +        +++++LV+DEADR+L+ GFQ +++ I+S +PK  R+T LFS+
Sbjct:  122 ESSPQQ--THTSFQTLQ--LSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKV-----IILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTR-PDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQTLLFSA 315          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX18_HUMAN (ATP-dependent RNA helicase DDX18 OS=Homo sapiens GN=DDX18 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28
Identity = 76/200 (38.00%), Postives = 119/200 (59.50%), Query Frame = 3
Query:   87 ALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            A  +T F+ L   ++E  L+A+ E GF   T +Q  +I  L   +D+   A TGSGKTLAF++P VE++ +      P    G +I+SPTREL+ Q + V +  ++        L++GG    A+ +K+   G N+++ TPGRL D M+      ++NL+ LV+DEADR+LD+GF++++  II  LP  R+T LFS+  T
Sbjct:  173 AFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYG-LIMGGSNRSAEAQKLGN-GINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQT 368          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DRS1_NEOFI3.243e-2840.29ATP-dependent RNA helicase drs1 OS=Neosartorya fis... [more]
DRS1_COCIM3.243e-2838.83ATP-dependent RNA helicase DRS1 OS=Coccidioides im... [more]
DRS1_BOTFB3.243e-2841.85ATP-dependent RNA helicase drs1 OS=Botryotinia fuc... [more]
RHLB_SODGM4.235e-2839.57ATP-dependent RNA helicase rhlB OS=Sodalis glossin... [more]
RH51_ARATH4.235e-2839.20DEAD-box ATP-dependent RNA helicase 51 OS=Arabidop... [more]
RH40_ARATH4.235e-2838.80DEAD-box ATP-dependent RNA helicase 40 OS=Arabidop... [more]
HAS1_GIBZE4.235e-2839.63ATP-dependent RNA helicase HAS1 OS=Gibberella zeae... [more]
DRS1_SCLS14.235e-2841.30ATP-dependent RNA helicase drs1 OS=Sclerotinia scl... [more]
DRS1_CANAL4.235e-2836.76ATP-dependent RNA helicase DRS1 OS=Candida albican... [more]
DDX18_HUMAN4.235e-2838.00ATP-dependent RNA helicase DDX18 OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
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