FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_PHOLL (ATP-dependent RNA helicase rhlB OS=Photorhabdus luminescens subsp. laumondii GN=rhlB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.232e-27
Identity = 81/199 (40.70%), Postives = 117/199 (58.79%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKL--RRTGLFSS 674
            LTE +FSD   AL   V+EAL   GF  CTP+QA T+P     +DVA  A TG+GKTLAF+      L    A+  R+ +Q   +I++PTREL+ QIY  A+  ++    +K  L  GG      + KI E G ++LIGT GRL D  ++  + +   ++++VLDEADR+ D+GF K I ++  R+P +  R   LFS+
Sbjct:    6 LTEKKFSDF--ALHPKVIEALDNKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLASAFHYLLTHPAAEERQTNQPRALIMAPTRELAVQIYSDAED-LAQATGLKMGLAYGGDGYDKQL-KILESGVDILIGTTGRLIDYTKQGHI-NLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPPVNERMNLLFSA 199          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_VANPO (ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DRS1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.232e-27
Identity = 71/202 (35.15%), Postives = 122/202 (60.40%), Query Frame = 3
Query:   69 ESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            ES+   +   + F+ L   LS PVL+ L++ G+   +P+Q+ATIP+  S KD+   A TGSGKT AF++P++E  R      K      ++++PTREL+ QI  V +     +  +   L VGG+ ++   ++++    +++I TPGR  D +      +  ++E+LV+DEADR+L+ GFQ++++ I++ LP  R+T LFS+
Sbjct:  221 ESSEATSTVHSTFNSL--TLSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDIIAGAVTGSGKTAAFMIPIIE--RLLYKPAKVASTRVIVLTPTRELAIQIADVGKKIGKYVSGLTFGLAVGGLNLRQQEQELKTR-PDIVIATPGRFIDHVRNSSSFNVDSVEVLVMDEADRMLEEGFQEELNEILTLLPSKRQTLLFSA 417          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DRS1_PHANO (ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria nodorum GN=DRS1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.232e-27
Identity = 74/187 (39.57%), Postives = 108/187 (57.75%), Query Frame = 3
Query:  123 ALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683
            +LS P+ + LA  GF   TP+QA  IP+    KDV   A TGSGKT AF++P++E  R     +K       I  PTREL+ Q ++VA   +++  D+   LL GG   +     ++    +++I TPGR  D M         +LEILVLDEADR+L+ GF+ Q++ I++ +PK R+T LFS+  T
Sbjct:  291 SLSRPIQKGLAAIGFTEPTPIQAKAIPIAMQGKDVVGGAETGSGKTAAFLIPILE--RLLYRPKKVPTTRVAIFMPTRELAVQCFNVATK-LASFTDITFALLAGGFSSREQEVMLKTR-PDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFETQLNEILTTIPKSRQTMLFSATMT 473          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_TOLAT (ATP-dependent RNA helicase rhlB OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=rhlB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.609e-27
Identity = 76/187 (40.64%), Postives = 113/187 (60.43%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644
            LTE  F++L   L   VL  +   GF  CTP+QA TIPLL + K++A  A TG+GKT+AF+      L    AS+ R+ +Q   +I++PTREL+ QIY+ A P +S     K  L  GG      +  + +EG +LLIGT GR+ D + +  ++D   ++++VLDEADR+ D+GF K I ++  R+P
Sbjct:    6 LTEITFAEL--GLEPQVLAGVEAKGFHNCTPIQAETIPLLLTGKNIAGQAQTGTGKTIAFLAGTFNYLLTHSASAERRQNQPRVLIMAPTRELAVQIYNDAVP-MSESCGFKMGLAYGGDGYDKQL-AVLQEGVDLLIGTTGRIIDYL-KQGIIDLGAIQVVVLDEADRMFDLGFIKDIRFLFRRMP 187          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_SHEFN (ATP-dependent RNA helicase rhlB OS=Shewanella frigidimarina (strain NCIMB 400) GN=rhlB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.609e-27
Identity = 76/199 (38.19%), Postives = 121/199 (60.80%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRR--ASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSS 674
            L+  +F+D    L   +L AL E GFEFCTP+QA ++P+L + KD+A  A TG+GKT+AF+V     L    A  +RK  +   +I++PTREL+ QI   A+  ++    +K  ++ GG   +   + + ++G ++LIGT GR+ D + R  V+   +++ +VLDEADR+ D+GF K I ++  R+P  K R   LFS+
Sbjct:    6 LSTKKFADFP--LKPEILAALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLVATFNHLLNVAAPESRKATEPRAIIMAPTRELAIQIAKDAK-LLAAHTGLKVGIVYGGESYETQ-RAVLDKGVDILIGTTGRIIDYV-RQGVISLSHIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNMLFSA 199          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_SHEAM (ATP-dependent RNA helicase rhlB OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rhlB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.609e-27
Identity = 78/199 (39.20%), Postives = 123/199 (61.81%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSS 674
            LT+ +F+DL   L + V +AL E GFE CTP+QA ++P+L   KD+A  A TG+GKTLAF+V      +       R+ +Q   ++++PTREL+ QI   A   +S    +K  ++ GG   +A  +K+ ++G ++LIGT GR+ D + R  V++   ++ +VLDEADR+ D+GF K I ++ +R+P  K R   LFS+
Sbjct:    6 LTQQKFADLP--LCDEVKQALNENGFEHCTPIQALSLPVLLEKKDIAGQAQTGTGKTLAFLVATFNHLLTTPVPEHRQLNQPRAIVMAPTRELAIQIAKDA-TLLSKHSGLKVGIVYGGEGYEAQ-RKVLDKGVDVLIGTTGRIIDYV-RQGVINLGAIQAVVLDEADRMFDLGFIKDIRFLFNRMPGAKERLNMLFSA 199          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_ASPOR (ATP-dependent RNA helicase has1 OS=Aspergillus oryzae GN=has1 PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.609e-27
Identity = 81/212 (38.21%), Postives = 128/212 (60.38%), Query Frame = 3
Query:   57 TVRMESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSAR-KPHQIMG-MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSSYST 683
            T+R+   P +     +F++L   LSE  ++ +   GFE  T VQ  TIP L + +DV   A TGSGKTL+F++P +E+L   S+ R KP    G +I+SPTREL+ QI+   +  ++       ++ +GG   +A+ +K+ + G NLL+ TPGRL D ++      F+NL  L++DEADR+L++GF+ ++  I   LP + R+T LFS+  T
Sbjct:  108 TIRL---PQQDGDPVKFTEL--GLSEKTMKGIEGMGFETMTEVQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAIEML---SALRFKPRNGTGAIIVSPTRELALQIFGQVRELLAHHSQTYGIV-IGGANRRAEAEKLMK-GVNLLVATPGRLLDHLQNTQGFVFKNLRTLIIDEADRILEVGFEDEMRQIAKILPSENRQTMLFSATQT 309          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP4_CHAGB (ATP-dependent RNA helicase DBP4 OS=Chaetomium globosum GN=DBP4 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.609e-27
Identity = 77/191 (40.31%), Postives = 112/191 (58.64%), Query Frame = 3
Query:  102 RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            +F+DL   L E     L  + FE  T VQ A IPL    +D+   A TGSGKTLAF+VP++E L  A        +  +IISPTREL+ QI+ V +  I       + L++GG  +K + +++     N+L+ TPGR+   +++    D  NL+ILVLDEADR++DMGFQ  +  ++  LP  R+T LFS+
Sbjct:   54 QFTDLP--LCEATASGLRASHFEVLTDVQRAAIPLALKGRDILGAAKTGSGKTLAFLVPVLEKLYHAKWTEYDG-LGALIISPTRELAVQIFEVLRK-IGRNHFFSAGLVIGGKSLKEEAERLGR--MNILVCTPGRMLQHLDQTANFDVNNLQILVLDEADRIMDMGFQSAVDALVEHLPTTRQTLLFSA 238          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RRP3_NEOFI (ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.102e-27
Identity = 78/207 (37.68%), Postives = 120/207 (57.97%), Query Frame = 3
Query:   69 ESNPNKALTETR-----FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            E+    A TETR     F DL   + + + EA    G++  TP+QA +IPL    +D+   A TGSGKT AF +P+++ L       KP    G+I++PTREL+ QI    +   ST+ +V+  ++VGG+++ +    + ++  ++++ TPGRL D +E       R L+ LV+DEADRLLDM F   +  I+  LP+ RRT LFS+
Sbjct:   37 ETQDEAAATETRPAPKSFKDL--GIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALME-----KPQSFFGLILAPTRELAFQISKSFESLGSTI-NVRCAVIVGGMDMVSQSIALGKK-PHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSA 234          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_VIBFM (ATP-dependent RNA helicase rhlB OS=Vibrio fischeri (strain MJ11) GN=rhlB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.102e-27
Identity = 72/187 (38.50%), Postives = 115/187 (61.50%), Query Frame = 3
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644
            +TE  F+DL   L   V++ L   GF  CTP+QA  +P+L + +D+A  A TG+GKTLAF+       +   A   RK  Q   +I++PTREL+ QI++ A+  I++   +K+ L  GG   +   +++ E+G ++LIGT GR+ D  ++  + DF+ ++ +VLDEADR+ D+GF K I +I  R+P
Sbjct:    6 ITEQNFADL--GLQPQVIDGLNAKGFIKCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAPEGRKITQPRAIIMAPTRELAIQIFNDAESLIAS-TGLKAALAYGGERYEKQ-QQVIEQGVDILIGTTGRIIDFYKQGHI-DFKMIQAVVLDEADRMFDLGFIKDIRFIFRRMP 187          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_PHOLL1.232e-2740.70ATP-dependent RNA helicase rhlB OS=Photorhabdus lu... [more]
DRS1_VANPO1.232e-2735.15ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma... [more]
DRS1_PHANO1.232e-2739.57ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria n... [more]
RHLB_TOLAT1.609e-2740.64ATP-dependent RNA helicase rhlB OS=Tolumonas auens... [more]
RHLB_SHEFN1.609e-2738.19ATP-dependent RNA helicase rhlB OS=Shewanella frig... [more]
RHLB_SHEAM1.609e-2739.20ATP-dependent RNA helicase rhlB OS=Shewanella amaz... [more]
HAS1_ASPOR1.609e-2738.21ATP-dependent RNA helicase has1 OS=Aspergillus ory... [more]
DBP4_CHAGB1.609e-2740.31ATP-dependent RNA helicase DBP4 OS=Chaetomium glob... [more]
RRP3_NEOFI2.102e-2737.68ATP-dependent rRNA helicase rrp3 OS=Neosartorya fi... [more]
RHLB_VIBFM2.102e-2738.50ATP-dependent RNA helicase rhlB OS=Vibrio fischeri... [more]

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Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
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