FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9404 contig Ccv1_Contig9404:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_EMENI (ATP-dependent rRNA helicase spb4 OS=Emericella nidulans GN=spb4 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.313e-37
Identity = 93/229 (40.61%), Postives = 128/229 (55.90%), Query Frame = 3
Query:   66 MESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFI-------------------------STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            M   P    +   +  + P LSE VL+A++  GF   TPVQA+ IPL  ++KDV V+A TGSGKTL+F++P+VE L R     K H +  +I+SPTREL+SQIY+V    +                         S L  V  +LL G      D+    +   NLL+ TPGRL +++    V     + E+LVLDEADRLLD+GF++ +  I+ RLPK RRTGLFS+
Sbjct:    1 MAPKPPSGTSSRAWDAVNPPLSEWVLDAVSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPIKKHHVGAIIVSPTRELASQIYNVLTSLLAFHPASAAVINTSETEDVPRPKHSSSVLRVVPQLLLGGSTSPAEDLSTFLKRSPNLLVATPGRLLELLSSPHVYCPQSSFEMLVLDEADRLLDLGFKETLQNILRRLPKQRRTGLFSA 229          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_GIBZE (ATP-dependent rRNA helicase SPB4 OS=Gibberella zeae GN=SPB4 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.715e-37
Identity = 96/228 (42.11%), Postives = 131/228 (57.46%), Query Frame = 3
Query:   66 MESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHV-----------------------AQPFISTLPDVKSVLLVGGVEVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            M +   K  +   +  L P LSE + +A+A  GF+  TPVQAAT+P     KDV V+A TGSGKTLAF++PLV+ L R S   K H +  +I+SPTREL++QI+ V                        +PF +T+P +   LLVGG      D++       N+LI +PGRL ++M    V     + E+LVLDEADRLLD+GF+  +  I+S LPK RRTGLFS+
Sbjct:    1 MATEKPKKRSPRAWDTLNPPLSEWIRDAVATMGFDQMTPVQAATLPHFMGNKDVVVEAVTGSGKTLAFLIPLVQKLLRLSEPTKKHHVAAIIVSPTRELAAQIHTVLMKLLQFHEASAEILPHLKDDDEKRPF-TTVPAIVPQLLVGGTTTTVQDLRFFLRHSPNVLISSPGRLVELMSSPHVHCPQSSFEVLVLDEADRLLDLGFKPDLQKILSHLPKQRRTGLFSA 227          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_KLULA (ATP-dependent rRNA helicase SPB4 OS=Kluyveromyces lactis GN=SPB4 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.822e-37
Identity = 89/199 (44.72%), Postives = 126/199 (63.32%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSAR-KPHQIMGMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVG--GVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            + DLK  +   +  A+   GFE  TPVQA+TIPL    KDV V++ TGSGKT+AFV+P++E  I   A+SA+ K      +IISPTREL+SQI+ V + F+   PD    ++S LLVG     V+ D+    +    +L+GTPGR+ D +++ +V    +   +VLDEAD+LLD+ FQK +  I+  LPK RRTGLFS+
Sbjct:    7 WDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNV-KTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSA 204          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_PHANO (ATP-dependent rRNA helicase SPB4 OS=Phaeosphaeria nodorum GN=SPB4 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.452e-36
Identity = 93/223 (41.70%), Postives = 125/223 (56.05%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFI--------------------------------STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            FS L PALSE +++A+   GF   TPVQ A IP+     DV V+A TGSGKTLAF++P+VE L R  +  K H +  +IISPTREL++QI+ V    +                                 TL  V  +LL G V    D+    ++  N+LIGTPGRL +++    V     + + LV+DEADRLLD+GF++ +  IISRLPK RRTGLFS+
Sbjct:   11 FSALTPALSEWIIDAVDAMGFVKTTPVQHAAIPMFMKNSDVVVEAVTGSGKTLAFLIPIVERLLREDAPTKKHHVGAIIISPTRELATQIHTVLSSLLKFHAPSAAMLEPDDEDTDMEDADTPPKPTFPPGTLKAVPQLLLGGSVTPAQDLSAFLKKSPNILIGTPGRLLELLRSPHVHCPQSSFDALVMDEADRLLDLGFKEDLQKIISRLPKQRRTGLFSA 233          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_CHAGB (ATP-dependent rRNA helicase SPB4 OS=Chaetomium globosum GN=SPB4 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.229e-35
Identity = 92/217 (42.40%), Postives = 126/217 (58.06%), Query Frame = 3
Query:   93 TETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFI---------------------STLPDVKSVLLVGGVEVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            T   +  L P+L+  +L+ L+  GFE  TPVQ +   +    KDV V+A TGSGKTLAF++P+VE L R+    K H +  +IISPTREL+SQIY+V   F+                     +T P V   LLVGG    A D+        N+LIGTPGRL +++    V     + E+LV+DEADRLLD+GF ++++ I+  LPK RRTGLFS+
Sbjct:   11 TPRSWGALTPSLAPWILDYLSSMGFEQPTPVQKSCFDIFRGNKDVVVEAVTGSGKTLAFLIPVVERLLRSEDPAKRHHVQAIIISPTRELASQIYNVLVSFLKFHAPSAHLLPHAKGDEKRPATTEPVVVPQLLVGGTTKAAEDLSTFLRLSPNILIGTPGRLAELLSTPYVKAPSSSFEVLVMDEADRLLDLGFSQELTRILGYLPKQRRTGLFSA 227          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_COCIM (ATP-dependent rRNA helicase SPB4 OS=Coccidioides immitis GN=SPB4 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.577e-35
Identity = 96/220 (43.64%), Postives = 126/220 (57.27%), Query Frame = 3
Query:  114 LKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPT--RELSSQIYHV--------------AQPFIS--------TLPDVKS-------VLLVGGVEVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            L P LSE +L+A+A  GF   TPVQA+TIPL   +KDV V+A TGSGKT+AF++P+VE L R  +  K H +  +I+SPT  REL+ QIY V               QP  S        TLP   S        LL+GG    A D+    +   NL + TPGRL +++    V     + E+LVLDEADRLLD+GF+  +   ++RLPK RRTGLFS+
Sbjct:   20 LTPPLSEWILDAVAAMGFTRMTPVQASTIPLFMGHKDVVVEAVTGSGKTMAFLIPVVEKLLRLEAPIKKHHVGAIIVSPTSFRELAEQIYKVLLSLLAFHAPSAAAIQPSTSDETADGETTLPSYPSSTLKVVPQLLLGGATTPAQDLSTFLKRSPNLFVSTPGRLLELLSSPHVHCPQTSFEVLVLDEADRLLDLGFKDDLQKTLARLPKQRRTGLFSA 239          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_PICST (ATP-dependent rRNA helicase SPB4 OS=Pichia stipitis GN=SPB4 PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.359e-34
Identity = 89/203 (43.84%), Postives = 124/203 (61.08%), Query Frame = 3
Query:  111 DLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILR----------RASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGGVE-VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            DL+P + E    A+A  GF   TPVQAATIPLL   KDV V+A TGSGKTLAF +P+++ +            A    K   ++ +++SPTREL+SQI  V    I  LP+    +K+ LLVG +  V+ D+ +  ++  ++LI TPGR+ D M    V    ++EI +LDEAD+LLD  F+K +  I+ RLPK RRTGLFS+
Sbjct:   16 DLQPWIKE----AIASLGFPTMTPVQAATIPLLSGNKDVVVEAVTGSGKTLAFAIPVLQKVSNRLYDSQEEGEAPEKVKQGHMLAIVLSPTRELASQIQSVFNNVIEYLPEDKIPIKTQLLVGSLSTVRDDLDRFLKDKPHILIATPGRMLDFMSSQYV-KMNSVEIAILDEADKLLDFSFEKDVVNILKRLPKQRRTGLFSA 213          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_NEUCR (ATP-dependent rRNA helicase spb-4 OS=Neurospora crassa GN=spb-4 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.318e-34
Identity = 90/210 (42.86%), Postives = 121/210 (57.62%), Query Frame = 3
Query:  114 LKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFI---------------------STLPDVKSVLLVGGVEVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            L P L++ +L+ L+  GF   TPVQ + + L    KDV V+A TGSGKTLAF++P+VE L R     K + + G+IISPTREL++QIY+V    +                     +T P V   LLVGG    A D+        NLLIGTPGRL +++    V       E+L++DEADRLLDMGF  +++ I+  LPK RRTGLFS+
Sbjct:   20 LTPPLAQWILDYLSSMGFTQPTPVQKSCLELFRGNKDVVVEAVTGSGKTLAFLIPVVEKLLRGEEPAKRNHVQGIIISPTRELATQIYNVLVSLVKFHEPSAEAISHAKSDEKRPTATQPVVVPQLLVGGTTKAAEDLGTFLRLSPNLLIGTPGRLAELLSSAYVKAPASTFEVLIMDEADRLLDMGFANELNRILGYLPKQRRTGLFSA 229          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB42_CANAL (ATP-dependent rRNA helicase SPB42 OS=Candida albicans GN=SPB42 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.503e-33
Identity = 86/219 (39.27%), Postives = 127/219 (57.99%), Query Frame = 3
Query:   66 MESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-----ILRRASSARKPHQI-----MGMIISPTRELSSQIYHVAQPFISTLPDVKSV-----LLVGGV-EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            M+SN      E    DL P + E    A++  G+   TPVQA+TIPLL   KDV V+A TGSGKTL+FV+P+++     + +  S    P  +     + +++SPTREL++QI  V    +  LP+ K       LLVG +  V+ D+ +       +LIGTPGR+ + +     +   +LEI++LDEAD+LLD  F+K +  I+ +LPK RRTGLFS+
Sbjct:    1 MKSNTESLAWENLRYDLHPWIKE----AISSMGYPTMTPVQASTIPLLSGNKDVVVEAVTGSGKTLSFVIPVLQKISDRLYKPDSDGDLPEPVKRGHMLSIVLSPTRELANQIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNVREDLNQFLTNQPQILIGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINILKKLPKQRRTGLFSA 215          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_PICGU (ATP-dependent rRNA helicase SPB4 OS=Pichia guilliermondii GN=SPB4 PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.563e-33
Identity = 80/183 (43.72%), Postives = 114/183 (62.30%), Query Frame = 3
Query:  144 EALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGGV-EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            +A+   GF   TPVQA+TIPL C  KDV V+A TGSGKTLAF +P++E + +     R    + G++ISPTREL++QI  V    +   P+    +K+ L+VG +  V+ D+    E    ++I TPGRL D     + +    +E++VLDEADRLLD+ FQ  +  I+ +LPK RRTGLFS+
Sbjct:   27 DAIDSLGFRSMTPVQASTIPLFCGNKDVVVEAVTGSGKTLAFAIPVLERVTKCMKENRGSSGLYGIVISPTRELANQINTVFHTLLQFYPEDQPPIKTQLIVGSLATVREDLNAFAENKPQIIIATPGRLLDFFS-SNAVKRSTVEMVVLDEADRLLDISFQNDVVSILKKLPKQRRTGLFSA 208          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SPB4_EMENI1.313e-3740.61ATP-dependent rRNA helicase spb4 OS=Emericella nid... [more]
SPB4_GIBZE1.715e-3742.11ATP-dependent rRNA helicase SPB4 OS=Gibberella zea... [more]
SPB4_KLULA3.822e-3744.72ATP-dependent rRNA helicase SPB4 OS=Kluyveromyces ... [more]
SPB4_PHANO1.452e-3641.70ATP-dependent rRNA helicase SPB4 OS=Phaeosphaeria ... [more]
SPB4_CHAGB1.229e-3542.40ATP-dependent rRNA helicase SPB4 OS=Chaetomium glo... [more]
SPB4_COCIM3.577e-3543.64ATP-dependent rRNA helicase SPB4 OS=Coccidioides i... [more]
SPB4_PICST1.359e-3443.84ATP-dependent rRNA helicase SPB4 OS=Pichia stipiti... [more]
SPB4_NEUCR2.318e-3442.86ATP-dependent rRNA helicase spb-4 OS=Neurospora cr... [more]
SPB42_CANAL1.503e-3339.27ATP-dependent rRNA helicase SPB42 OS=Candida albic... [more]
SPB4_PICGU2.563e-3343.72ATP-dependent rRNA helicase SPB4 OS=Pichia guillie... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
back to top