FC868819
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_EMENI (ATP-dependent rRNA helicase spb4 OS=Emericella nidulans GN=spb4 PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.313e-37 Identity = 93/229 (40.61%), Postives = 128/229 (55.90%), Query Frame = 3 Query: 66 MESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFI-------------------------STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 M P + + + P LSE VL+A++ GF TPVQA+ IPL ++KDV V+A TGSGKTL+F++P+VE L R K H + +I+SPTREL+SQIY+V + S L V +LL G D+ + NLL+ TPGRL +++ V + E+LVLDEADRLLD+GF++ + I+ RLPK RRTGLFS+ Sbjct: 1 MAPKPPSGTSSRAWDAVNPPLSEWVLDAVSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPIKKHHVGAIIVSPTRELASQIYNVLTSLLAFHPASAAVINTSETEDVPRPKHSSSVLRVVPQLLLGGSTSPAEDLSTFLKRSPNLLVATPGRLLELLSSPHVYCPQSSFEMLVLDEADRLLDLGFKETLQNILRRLPKQRRTGLFSA 229
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_GIBZE (ATP-dependent rRNA helicase SPB4 OS=Gibberella zeae GN=SPB4 PE=3 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.715e-37 Identity = 96/228 (42.11%), Postives = 131/228 (57.46%), Query Frame = 3 Query: 66 MESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHV-----------------------AQPFISTLPDVKSVLLVGGVEVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 M + K + + L P LSE + +A+A GF+ TPVQAAT+P KDV V+A TGSGKTLAF++PLV+ L R S K H + +I+SPTREL++QI+ V +PF +T+P + LLVGG D++ N+LI +PGRL ++M V + E+LVLDEADRLLD+GF+ + I+S LPK RRTGLFS+ Sbjct: 1 MATEKPKKRSPRAWDTLNPPLSEWIRDAVATMGFDQMTPVQAATLPHFMGNKDVVVEAVTGSGKTLAFLIPLVQKLLRLSEPTKKHHVAAIIVSPTRELAAQIHTVLMKLLQFHEASAEILPHLKDDDEKRPF-TTVPAIVPQLLVGGTTTTVQDLRFFLRHSPNVLISSPGRLVELMSSPHVHCPQSSFEVLVLDEADRLLDLGFKPDLQKILSHLPKQRRTGLFSA 227
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_KLULA (ATP-dependent rRNA helicase SPB4 OS=Kluyveromyces lactis GN=SPB4 PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 3.822e-37 Identity = 89/199 (44.72%), Postives = 126/199 (63.32%), Query Frame = 3 Query: 105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSAR-KPHQIMGMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVG--GVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 + DLK + + A+ GFE TPVQA+TIPL KDV V++ TGSGKT+AFV+P++E I A+SA+ K +IISPTREL+SQI+ V + F+ PD ++S LLVG V+ D+ + +L+GTPGR+ D +++ +V + +VLDEAD+LLD+ FQK + I+ LPK RRTGLFS+ Sbjct: 7 WDDLKCEIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNV-KTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSA 204
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_PHANO (ATP-dependent rRNA helicase SPB4 OS=Phaeosphaeria nodorum GN=SPB4 PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.452e-36 Identity = 93/223 (41.70%), Postives = 125/223 (56.05%), Query Frame = 3 Query: 105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFI--------------------------------STLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 FS L PALSE +++A+ GF TPVQ A IP+ DV V+A TGSGKTLAF++P+VE L R + K H + +IISPTREL++QI+ V + TL V +LL G V D+ ++ N+LIGTPGRL +++ V + + LV+DEADRLLD+GF++ + IISRLPK RRTGLFS+ Sbjct: 11 FSALTPALSEWIIDAVDAMGFVKTTPVQHAAIPMFMKNSDVVVEAVTGSGKTLAFLIPIVERLLREDAPTKKHHVGAIIISPTRELATQIHTVLSSLLKFHAPSAAMLEPDDEDTDMEDADTPPKPTFPPGTLKAVPQLLLGGSVTPAQDLSAFLKKSPNILIGTPGRLLELLRSPHVHCPQSSFDALVMDEADRLLDLGFKEDLQKIISRLPKQRRTGLFSA 233
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_CHAGB (ATP-dependent rRNA helicase SPB4 OS=Chaetomium globosum GN=SPB4 PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.229e-35 Identity = 92/217 (42.40%), Postives = 126/217 (58.06%), Query Frame = 3 Query: 93 TETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFI---------------------STLPDVKSVLLVGGVEVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 T + L P+L+ +L+ L+ GFE TPVQ + + KDV V+A TGSGKTLAF++P+VE L R+ K H + +IISPTREL+SQIY+V F+ +T P V LLVGG A D+ N+LIGTPGRL +++ V + E+LV+DEADRLLD+GF ++++ I+ LPK RRTGLFS+ Sbjct: 11 TPRSWGALTPSLAPWILDYLSSMGFEQPTPVQKSCFDIFRGNKDVVVEAVTGSGKTLAFLIPVVERLLRSEDPAKRHHVQAIIISPTRELASQIYNVLVSFLKFHAPSAHLLPHAKGDEKRPATTEPVVVPQLLVGGTTKAAEDLSTFLRLSPNILIGTPGRLAELLSTPYVKAPSSSFEVLVMDEADRLLDLGFSQELTRILGYLPKQRRTGLFSA 227
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_COCIM (ATP-dependent rRNA helicase SPB4 OS=Coccidioides immitis GN=SPB4 PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.577e-35 Identity = 96/220 (43.64%), Postives = 126/220 (57.27%), Query Frame = 3 Query: 114 LKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPT--RELSSQIYHV--------------AQPFIS--------TLPDVKS-------VLLVGGVEVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 L P LSE +L+A+A GF TPVQA+TIPL +KDV V+A TGSGKT+AF++P+VE L R + K H + +I+SPT REL+ QIY V QP S TLP S LL+GG A D+ + NL + TPGRL +++ V + E+LVLDEADRLLD+GF+ + ++RLPK RRTGLFS+ Sbjct: 20 LTPPLSEWILDAVAAMGFTRMTPVQASTIPLFMGHKDVVVEAVTGSGKTMAFLIPVVEKLLRLEAPIKKHHVGAIIVSPTSFRELAEQIYKVLLSLLAFHAPSAAAIQPSTSDETADGETTLPSYPSSTLKVVPQLLLGGATTPAQDLSTFLKRSPNLFVSTPGRLLELLSSPHVHCPQTSFEVLVLDEADRLLDLGFKDDLQKTLARLPKQRRTGLFSA 239
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_PICST (ATP-dependent rRNA helicase SPB4 OS=Pichia stipitis GN=SPB4 PE=3 SV=2) HSP 1 Score: 146.362 bits (368), Expect = 1.359e-34 Identity = 89/203 (43.84%), Postives = 124/203 (61.08%), Query Frame = 3 Query: 111 DLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILR----------RASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGGVE-VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 DL+P + E A+A GF TPVQAATIPLL KDV V+A TGSGKTLAF +P+++ + A K ++ +++SPTREL+SQI V I LP+ +K+ LLVG + V+ D+ + ++ ++LI TPGR+ D M V ++EI +LDEAD+LLD F+K + I+ RLPK RRTGLFS+ Sbjct: 16 DLQPWIKE----AIASLGFPTMTPVQAATIPLLSGNKDVVVEAVTGSGKTLAFAIPVLQKVSNRLYDSQEEGEAPEKVKQGHMLAIVLSPTRELASQIQSVFNNVIEYLPEDKIPIKTQLLVGSLSTVRDDLDRFLKDKPHILIATPGRMLDFMSSQYV-KMNSVEIAILDEADKLLDFSFEKDVVNILKRLPKQRRTGLFSA 213
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_NEUCR (ATP-dependent rRNA helicase spb-4 OS=Neurospora crassa GN=spb-4 PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.318e-34 Identity = 90/210 (42.86%), Postives = 121/210 (57.62%), Query Frame = 3 Query: 114 LKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFI---------------------STLPDVKSVLLVGGVEVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 L P L++ +L+ L+ GF TPVQ + + L KDV V+A TGSGKTLAF++P+VE L R K + + G+IISPTREL++QIY+V + +T P V LLVGG A D+ NLLIGTPGRL +++ V E+L++DEADRLLDMGF +++ I+ LPK RRTGLFS+ Sbjct: 20 LTPPLAQWILDYLSSMGFTQPTPVQKSCLELFRGNKDVVVEAVTGSGKTLAFLIPVVEKLLRGEEPAKRNHVQGIIISPTRELATQIYNVLVSLVKFHEPSAEAISHAKSDEKRPTATQPVVVPQLLVGGTTKAAEDLGTFLRLSPNLLIGTPGRLAELLSSAYVKAPASTFEVLIMDEADRLLDMGFANELNRILGYLPKQRRTGLFSA 229
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB42_CANAL (ATP-dependent rRNA helicase SPB42 OS=Candida albicans GN=SPB42 PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.503e-33 Identity = 86/219 (39.27%), Postives = 127/219 (57.99%), Query Frame = 3 Query: 66 MESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-----ILRRASSARKPHQI-----MGMIISPTRELSSQIYHVAQPFISTLPDVKSV-----LLVGGV-EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 M+SN E DL P + E A++ G+ TPVQA+TIPLL KDV V+A TGSGKTL+FV+P+++ + + S P + + +++SPTREL++QI V + LP+ K LLVG + V+ D+ + +LIGTPGR+ + + + +LEI++LDEAD+LLD F+K + I+ +LPK RRTGLFS+ Sbjct: 1 MKSNTESLAWENLRYDLHPWIKE----AISSMGYPTMTPVQASTIPLLSGNKDVVVEAVTGSGKTLSFVIPVLQKISDRLYKPDSDGDLPEPVKRGHMLSIVLSPTRELANQIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNVREDLNQFLTNQPQILIGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINILKKLPKQRRTGLFSA 215
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_PICGU (ATP-dependent rRNA helicase SPB4 OS=Pichia guilliermondii GN=SPB4 PE=3 SV=2) HSP 1 Score: 142.124 bits (357), Expect = 2.563e-33 Identity = 80/183 (43.72%), Postives = 114/183 (62.30%), Query Frame = 3 Query: 144 EALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGGV-EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 +A+ GF TPVQA+TIPL C KDV V+A TGSGKTLAF +P++E + + R + G++ISPTREL++QI V + P+ +K+ L+VG + V+ D+ E ++I TPGRL D + + +E++VLDEADRLLD+ FQ + I+ +LPK RRTGLFS+ Sbjct: 27 DAIDSLGFRSMTPVQASTIPLFCGNKDVVVEAVTGSGKTLAFAIPVLERVTKCMKENRGSSGLYGIVISPTRELANQINTVFHTLLQFYPEDQPPIKTQLIVGSLATVREDLNAFAENKPQIIIATPGRLLDFFS-SNAVKRSTVEMVVLDEADRLLDISFQNDVVSILKKLPKQRRTGLFSA 208 The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bpback to top |