FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_ECOHS (ATP-dependent RNA helicase rhlB OS=Escherichia coli O9:H4 (strain HS) GN=rhlB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 76/187 (40.64%), Postives = 114/187 (60.96%), Query Frame = 3 
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644
            LTE +FSD   AL   V+EAL + GF  CTP+QA  +PL  + +DVA  A TG+GKT+AF+      L    A + RK +Q   +I++PTREL+ QI+  A+P ++    +K  L  GG      + K+ E G ++LIGT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P
Sbjct:    6 LTEQKFSDF--ALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEP-LAEATGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMP 187
[Close]
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_ECODH (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain K12 / DH10B) GN=rhlB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 76/187 (40.64%), Postives = 114/187 (60.96%), Query Frame = 3 
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644
            LTE +FSD   AL   V+EAL + GF  CTP+QA  +PL  + +DVA  A TG+GKT+AF+      L    A + RK +Q   +I++PTREL+ QI+  A+P ++    +K  L  GG      + K+ E G ++LIGT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P
Sbjct:    6 LTEQKFSDF--ALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEP-LAEATGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMP 187
[Close]
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_ECOBW (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain K12 / BW2952) GN=rhlB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 76/187 (40.64%), Postives = 114/187 (60.96%), Query Frame = 3 
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644
            LTE +FSD   AL   V+EAL + GF  CTP+QA  +PL  + +DVA  A TG+GKT+AF+      L    A + RK +Q   +I++PTREL+ QI+  A+P ++    +K  L  GG      + K+ E G ++LIGT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P
Sbjct:    6 LTEQKFSDF--ALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEP-LAEATGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMP 187
[Close]
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_ECO8A (ATP-dependent RNA helicase rhlB OS=Escherichia coli O8 (strain IAI1) GN=rhlB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 76/187 (40.64%), Postives = 114/187 (60.96%), Query Frame = 3 
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644
            LTE +FSD   AL   V+EAL + GF  CTP+QA  +PL  + +DVA  A TG+GKT+AF+      L    A + RK +Q   +I++PTREL+ QI+  A+P ++    +K  L  GG      + K+ E G ++LIGT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P
Sbjct:    6 LTEQKFSDF--ALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEP-LAEATGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMP 187
[Close]
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_ECO81 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O81 (strain ED1a) GN=rhlB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 76/187 (40.64%), Postives = 114/187 (60.96%), Query Frame = 3 
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644
            LTE +FSD   AL   V+EAL + GF  CTP+QA  +PL  + +DVA  A TG+GKT+AF+      L    A + RK +Q   +I++PTREL+ QI+  A+P ++    +K  L  GG      + K+ E G ++LIGT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P
Sbjct:    6 LTEQKFSDF--ALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEP-LAEATGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMP 187
[Close]
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_ECO7I (ATP-dependent RNA helicase rhlB OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 76/187 (40.64%), Postives = 114/187 (60.96%), Query Frame = 3 
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644
            LTE +FSD   AL   V+EAL + GF  CTP+QA  +PL  + +DVA  A TG+GKT+AF+      L    A + RK +Q   +I++PTREL+ QI+  A+P ++    +K  L  GG      + K+ E G ++LIGT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P
Sbjct:    6 LTEQKFSDF--ALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEP-LAQATGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMP 187
[Close]
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_ECO5E (ATP-dependent RNA helicase rhlB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 76/187 (40.64%), Postives = 114/187 (60.96%), Query Frame = 3 
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644
            LTE +FSD   AL   V+EAL + GF  CTP+QA  +PL  + +DVA  A TG+GKT+AF+      L    A + RK +Q   +I++PTREL+ QI+  A+P ++    +K  L  GG      + K+ E G ++LIGT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P
Sbjct:    6 LTEQKFSDF--ALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHCLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEP-LAEATGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMP 187
[Close]
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_ECO57 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O157:H7 GN=rhlB PE=3 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 76/187 (40.64%), Postives = 114/187 (60.96%), Query Frame = 3 
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644
            LTE +FSD   AL   V+EAL + GF  CTP+QA  +PL  + +DVA  A TG+GKT+AF+      L    A + RK +Q   +I++PTREL+ QI+  A+P ++    +K  L  GG      + K+ E G ++LIGT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P
Sbjct:    6 LTEQKFSDF--ALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHCLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEP-LAEATGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMP 187
[Close]
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_ECO55 (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain 55989 / EAEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 76/187 (40.64%), Postives = 114/187 (60.96%), Query Frame = 3 
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644
            LTE +FSD   AL   V+EAL + GF  CTP+QA  +PL  + +DVA  A TG+GKT+AF+      L    A + RK +Q   +I++PTREL+ QI+  A+P ++    +K  L  GG      + K+ E G ++LIGT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P
Sbjct:    6 LTEQKFSDF--ALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEP-LAEATGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMP 187
[Close]
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_ECO45 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 76/187 (40.64%), Postives = 114/187 (60.96%), Query Frame = 3 
Query:   90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644
            LTE +FSD   AL   V+EAL + GF  CTP+QA  +PL  + +DVA  A TG+GKT+AF+      L    A + RK +Q   +I++PTREL+ QI+  A+P ++    +K  L  GG      + K+ E G ++LIGT GRL D   + + ++   ++++VLDEADR+ D+GF K I ++  R+P
Sbjct:    6 LTEQKFSDF--ALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEP-LAEATGLKLGLAYGGDGYDKQL-KVLESGVDILIGTTGRLID-YAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMP 187
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_ECOHS2.745e-2740.64ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECODH2.745e-2740.64ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOBW2.745e-2740.64ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO8A2.745e-2740.64ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO812.745e-2740.64ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO7I2.745e-2740.64ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO5E2.745e-2740.64ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO572.745e-2740.64ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO552.745e-2740.64ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO452.745e-2740.64ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
back to top