FC868819
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_ASHGO (ATP-dependent rRNA helicase SPB4 OS=Ashbya gossypii GN=SPB4 PE=3 SV=2) HSP 1 Score: 141.739 bits (356), Expect = 3.348e-33 Identity = 85/185 (45.95%), Postives = 116/185 (62.70%), Query Frame = 3 Query: 147 ALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRR---ASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGG--VEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 A+ G+E TPVQA+TIPL KDV V++ TGSGKT+AFV+P++E + + SS K +IISPTREL+SQI V + F++ PD +KS LL+G V+ DV E +L+GTPGRL D + +M + + +LDEAD+LLDM F+K + I+ LPK RRTGLFS+ Sbjct: 21 AVDAMGYETMTPVQASTIPLFARNKDVVVESVTGSGKTVAFVIPVLERVIQDDANSSKLKKGHFHTIIISPTRELASQIQGVIEAFLTYYPDGEYPIKSQLLIGSNTSSVRDDVAAFLEHRPQILVGTPGRLLDFL-KMPNIKTSSCGAAILDEADKLLDMNFEKDVETILKMLPKQRRTGLFSA 204
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_LODEL (ATP-dependent rRNA helicase SPB4 OS=Lodderomyces elongisporus GN=SPB4 PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.711e-33 Identity = 87/221 (39.37%), Postives = 128/221 (57.92%), Query Frame = 3 Query: 66 MESNPNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-----ILRRASSARKPHQI-----MGMIISPTRELSSQIYHVAQPFISTLPD-------VKSVLLVGGV-EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 M++N L E DL+P L + A+ + TPVQA+TIPLL KDV V+A TGSGKTLAF +P+++ + + KP + + ++++PTREL+ QI V + LP+ +K+ LLVG + V+ D+ +E +LI TPGRL D M + ++ +LEI++LDEAD+LLDM F+ + I+ LPK RRTGLFS+ Sbjct: 1 MQTNKGSLLWENLRVDLEPWLKD----AIRSLNYPTMTPVQASTIPLLSGNKDVIVEAVTGSGKTLAFAIPVLQKVSKRLYQVPEGEEKPEPVKRGHMLAIVMAPTRELAKQIQMVFDKVLELLPEEDSYEPRIKTQLLVGFLGNVREDLDSYQENRPQILIATPGRLLDFMS-LQIVKTSSLEIVILDEADKLLDMSFETDVIKILKMLPKQRRTGLFSA 216
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB41_CANAL (ATP-dependent rRNA helicase SPB41 OS=Candida albicans GN=SPB41 PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.711e-33 Identity = 84/214 (39.25%), Postives = 129/214 (60.28%), Query Frame = 3 Query: 84 KALTET-RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-----ILRRASSARKPHQI-----MGMIISPTRELSSQIYHVAQPFISTLPDVKSV-----LLVGGV-EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 K+ TE+ + +L+ L + EA++ G+ TPVQA+TIPLL KDV V+A TGSGKTL+FV+P+++ + + S P + + +++SPTREL++QI V + LP+ K LLVG + V+ D+ + +LIGTPGR+ + + + +LEI++LDEAD+LLD F+K + I+ +LPK RRTGLFS+ Sbjct: 2 KSNTESLAWENLRYDLHSWIKEAISSMGYPTMTPVQASTIPLLSGNKDVVVEAVTGSGKTLSFVIPVLQKISDRLYKPDSDGDLPEPVKRGHMLSIVLSPTRELANQIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNVREDLNQFLTNQPQILIGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINILKKLPKQRRTGLFSA 215
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_XYLFA (ATP-dependent RNA helicase rhlB OS=Xylella fastidiosa GN=rhlB PE=3 SV=2) HSP 1 Score: 140.969 bits (354), Expect = 5.711e-33 Identity = 89/204 (43.63%), Postives = 127/204 (62.25%), Query Frame = 3 Query: 81 NKALTETRFS--DLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--RRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSS 674 +K LT FS DL PAL L L AGF CTP+QA T+P+ + +D+A A TG+GKTLAF+V +V L R R P +I++PTREL+ QIY+ A F L ++ L+ GGV+ +++ +GA+++I TPGRL D +++ +V+ R EI VLDEADR+ D+GF K I +I+ RLP+ R+T LFS+ Sbjct: 3 DKPLTNLNFSSLDLHPAL----LTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSRPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNL-GLRFALIYGGVDYDKQ-REMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSRQTLLFSA 200
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_YARLI (ATP-dependent RNA helicase HAS1 OS=Yarrowia lipolytica GN=HAS1 PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.711e-33 Identity = 81/187 (43.32%), Postives = 123/187 (65.78%), Query Frame = 3 Query: 126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 LSE +++L + GFE TPVQ TIP L + +DV A TGSGKTLAF++P +E+LR+ KP G+I+ SPTREL+ QIY VA+ ++ ++ +GG + + +K+ + G NLL+ TPGRL D ++ F+NL+ L++DEADR+L++GF++++ II LPK R++ LFS+ T Sbjct: 138 LSENTMQSLKDMGFETMTPVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLRKLKF--KPRNGTGVIVVSPTRELALQIYGVARDLMANHSQTLGIV-IGGNNRRQEEEKLNK-GVNLLVCTPGRLLDHLQNSQGFVFKNLKALIIDEADRILEIGFEQEMKEIIKILPKERQSMLFSATQT 320
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: SPB4_CANGA (ATP-dependent rRNA helicase SPB4 OS=Candida glabrata GN=SPB4 PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 7.458e-33 Identity = 84/199 (42.21%), Postives = 125/199 (62.81%), Query Frame = 3 Query: 105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRA---SSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPD----VKSVLLVGGVE--VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 ++DL L + +A+ +GF+ TPVQA+TIP+ KDV V++ TGSGKT+AFV+P++E + +S K +I++PTRELS QI +V F+ P+ ++S L+VG E V+ DV + +E +LIGTPGR+ D ++ V + ++VLDEADRLLD+ F K + I++ LPK RRTGLFS+ Sbjct: 7 WADLDYELQPWIKKAINVSGFDSMTPVQASTIPMFAKNKDVVVESVTGSGKTIAFVIPILEKIISEGINNSKFKKGHFYSLILAPTRELSMQIQNVVSSFLEHYPEDQYPIRSQLVVGTNEKSVRDDVNTLLDERPQILIGTPGRVLDFLQSPSV-KTSSCGMVVLDEADRLLDVSFFKDVEKILNVLPKQRRTGLFSA 204
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_XYLFT (ATP-dependent RNA helicase rhlB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rhlB PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 7.458e-33 Identity = 88/204 (43.14%), Postives = 127/204 (62.25%), Query Frame = 3 Query: 81 NKALTETRFS--DLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSA--RKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSS 674 +K LT FS DL PAL L L AGF CTP+QA T+P+ + +D+A A TG+GKTLAF+V +V L + R P +I++PTREL+ QIY+ A F L ++ L+ GGV+ +++ +GA+++I TPGRL D +++ +V+ R EI VLDEADR+ D+GF K I +I+ RLP+ R+T LFS+ Sbjct: 3 DKPLTNLNFSSFDLHPAL----LTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSSPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNL-GLRFALIYGGVDYDRQ-REMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSRQTLLFSA 200
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: HAS1_PHANO (ATP-dependent RNA helicase HAS1 OS=Phaeosphaeria nodorum GN=HAS1 PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.170e-32 Identity = 86/196 (43.88%), Postives = 122/196 (62.24%), Query Frame = 3 Query: 99 TRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMII-SPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSSYST 683 TRF +L LSE +EA+ GFE T +Q IP L S KDV A TGSGKTLAF++P +E+L +S KP G+I+ SPTREL+ QI+ VA+ + ++ +GG +A+ +K+ + G NLLI TPGRL D + F+NL+ L++DEADR+L++GF+ ++ II LP R+T LFS+ T Sbjct: 131 TRFDELN--LSERTMEAIKTMGFESMTEIQRKAIPPLLSGKDVLGAAKTGSGKTLAFLIPAIEML--SSMRFKPRNGTGVIVVSPTRELALQIFGVARELMEKHSQTFGIV-IGGANRRAEAEKLAK-GVNLLIATPGRLLDHLHNTQGFVFKNLKSLIIDEADRILEVGFEDEMRSIIKILPTDRQTMLFSATQT 320
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_VIBVY (ATP-dependent RNA helicase rhlB OS=Vibrio vulnificus (strain YJ016) GN=rhlB PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.834e-32 Identity = 77/187 (41.18%), Postives = 119/187 (63.64%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP 644 +TE +F+DL L+ V+E L + GFEFCTP+QA +P+L S +D+A A TG+GKTLAF+ + A R+P Q +I++PTREL+ QIY+ A+P I++ +K+ L GG + K+ + G ++LIGT GR+ D ++ V + N++ +VLDEADR+ D+GF K I ++ R+P Sbjct: 6 ITEQKFADL--GLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTHAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIAS-TGIKAALAYGGESYDKQLAKL-QGGVDVLIGTTGRIIDFYKQR-VFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RHLB_PHOPR (ATP-dependent RNA helicase rhlB OS=Photobacterium profundum GN=rhlB PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.701e-32 Identity = 82/199 (41.21%), Postives = 126/199 (63.32%), Query Frame = 3 Query: 90 LTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFSS 674 +TE +F+DL L VLE L GF +CTP+QA +P++ + +D+A A TG+GKTLAF+ +L AS RK +Q +I++PTREL+ QIY+ A P +++ +K+ L GG E +K+ EG ++LIGT GR+ D ++ V+D +++++VLDEADR+ D+GF K I ++ R+ PK R LFS+ Sbjct: 6 ITEQKFADL--GLEPTVLEGLDAQGFHYCTPIQALALPVVLTGQDIAGQAQTGTGKTLAFLTATFNYLLLNPASDERKTNQPRAIIMAPTRELAIQIYNDAAPLLAS-TGLKAGLAYGG-EAYEKQQKVFAEGVDILIGTCGRIIDFYKQR-VIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPKARLNMLFSA 199 The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bpback to top |