FC868819
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX4_BOVIN (Probable ATP-dependent RNA helicase DDX4 OS=Bos taurus GN=DDX4 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23 Identity = 65/166 (39.16%), Postives = 108/166 (65.06%), Query Frame = 3 Query: 150 LAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRR----ASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIIS 635 +A+AG+ TPVQ +IP++ +D+ A TGSGKT AF++P++ + R AS ++ + +I++PTREL +QIY A+ F S V++V++ GG ++ +++I +G N+L TPGRL D++ + + + R ++ LVLDEADR+LDMGF ++ +IS Sbjct: 305 IAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKF-SFGTCVRAVVIYGGTQLGHSIRQI-VQGCNILCATPGRLMDVIGK-EKIGLRQVKYLVLDEADRMLDMGFGPEMKKLIS 467
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP10_NEUCR (ATP-dependent RNA helicase dbp-10 OS=Neurospora crassa GN=dbp-10 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23 Identity = 69/183 (37.70%), Postives = 105/183 (57.38%), Query Frame = 3 Query: 126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 L+ +L A+ GF TP+Q IPL+ KDV A TGSGKT AFV+P++E L+ S +I+SP+REL+ Q V + + D+K+VLLVGG ++ + +++I TPGR + M+ L +++ +V DEADRL +MGF +++ I+ LP R+T LFS+ Sbjct: 106 LNAHLLRAITRKGFSVPTPIQRKAIPLILERKDVVGMARTGSGKTAAFVIPMIERLKGHSPRVGSR---ALIMSPSRELALQTLKVVKE-LGRGTDLKTVLLVGGDSLEEQFGMM-ASNPDIIIATPGRFLHLKVEMN-LSLASIKYVVFDEADRLFEMGFATELTEILHALPPSRQTLLFSA 282
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: CSHA_BACLD (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=cshA PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23 Identity = 68/187 (36.36%), Postives = 108/187 (57.75%), Query Frame = 3 Query: 126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTREL----SSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 LS + +A+ GFE TP+QA TIPL + KDV A TG+GKT AF +PLVE + S I ++I+PTREL S ++Y + Q + + + GG ++ ++ + ++ ++++GTPGRL D + R + + + +VLDEAD +L+MGF + I I+S +P +T LFS+ Sbjct: 10 LSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESP-----NIQAIVIAPTRELAIQVSEELYKIGQD-----KRARVLPIYGGQDIGRQIRAL-KKNPHIIVGTPGRLLDHINRR-TMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSA 184
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: PRP5_YARLI (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Yarrowia lipolytica GN=PRP5 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23 Identity = 69/194 (35.57%), Postives = 110/194 (56.70%), Query Frame = 3 Query: 126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPL---------VEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIM--ERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 L P + L + ++ T +QA IP + S +DV A TGSGKTLAF++P+ VE S H +G+II+PTREL QIY +PF++ L ++ +V GG +K + + ++G ++++ TPGR+ D++ + VL + LV+DEADR+ DMGF+ Q+ + + R+T LFS+ Sbjct: 385 LPGPTMGVLNDLRYDKPTSIQAQAIPAVMSGRDVISVAKTGSGKTLAFLLPMLRHIKHRVGVETHTTTLSGASSHP-LGVIITPTRELCVQIYRDLRPFLAAL-ELTAVCAYGGSPIKDQIAAL-KKGTHIIVCTPGRMIDLLAANQGRVLSLSRVTFLVIDEADRMFDMGFEPQVLKLTQSIRPDRQTVLFSA 575
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DED1_CANAL (ATP-dependent RNA helicase DED1 OS=Candida albicans GN=DED1 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23 Identity = 70/199 (35.18%), Postives = 117/199 (58.79%), Query Frame = 3 Query: 120 PALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEI--------LRRASSARKPHQIMG--MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP----KLRRTGLFSS 674 P L E ++E + + F TPVQ ++P++ + +D+ A TGSGKT F+ P++ + ++ A H++ ++++PTREL SQIY ++ F S V++ ++ GG ++ ++ ++ G +LL+ TPGRL D+++R V N+ LVLDEADR+LDMGF+ QI YI+ K R+T +FS+ Sbjct: 191 PPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESNGAFSSHKVYPTILVMAPTRELVSQIYEESKKF-SYRSWVRACVVYGGADIGQQMRNMDR-GCDLLVATPGRLKDLLDRGKV-SLANIRYLVLDEADRMLDMGFEPQIRYIVEECDMPAVKDRQTLMFSA 386
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX3X_HUMAN (ATP-dependent RNA helicase DDX3X OS=Homo sapiens GN=DDX3X PE=1 SV=3) HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23 Identity = 77/208 (37.02%), Postives = 120/208 (57.69%), Query Frame = 3 Query: 105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV---------EILRRASS----ARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISR---LPK-LRRTGLFSS 674 FSD++ + E ++ + + TPVQ IP++ +D+ A TGSGKT AF++P++ E LR R+ + ++++PTREL+ QIY A+ F S V+ ++ GG ++ ++ + E G +LL+ TPGRL D+MER + LDF + LVLDEADR+LDMGF+ QI I+ + PK +R T +FS+ Sbjct: 182 FSDVE--MGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKF-SYRSRVRPCVVYGGADIGQQIRDL-ERGCHLLVATPGRLVDMMERGKIGLDF--CKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSA 383
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX3L_MOUSE (Putative ATP-dependent RNA helicase Pl10 OS=Mus musculus GN=D1Pas1 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23 Identity = 77/208 (37.02%), Postives = 120/208 (57.69%), Query Frame = 3 Query: 105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV---------EILR----RASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISR---LPK-LRRTGLFSS 674 FSD++ + E ++ + + TPVQ IP++ +D+ A TGSGKT AF++P++ E LR R+ + ++++PTREL+ QIY A+ F S V+ ++ GG ++ ++ + E G +LL+ TPGRL D+MER + LDF + LVLDEADR+LDMGF+ QI I+ + PK +R T +FS+ Sbjct: 181 FSDVE--MGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKF-SYRSRVRPCVVYGGADIGQQIRDL-ERGCHLLVATPGRLVDMMERGKIGLDF--CKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSA 382
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP3_GIBZE (ATP-dependent RNA helicase DBP3 OS=Gibberella zeae GN=DBP3 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23 Identity = 69/174 (39.66%), Postives = 101/174 (58.05%), Query Frame = 3 Query: 159 AGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSS 674 A ++ TP+Q+A+ P S +DV A TGSGKT+AF +P VE A SA K +++SPTREL+ Q Y ++ L +K V L GG K D + + GA++++ TPGRL D M +D + VLDEADR+LD GF++ I I+S P + R+T +F++ Sbjct: 179 ANYKAPTPIQSASWPFTLSGRDVIGVAETGSGKTMAFALPCVE----AISALKHKHTKAVVVSPTRELAMQTYE-QMASVAALNRMKCVCLYGGAS-KDDQRNLLNRGADIIVATPGRLKDFMSD-GTVDLSHSAFAVLDEADRMLDKGFEEDIKMILSSCPPREKRQTLMFTA 345
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: PRP5_ASHGO (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Ashbya gossypii GN=PRP5 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.102e-23 Identity = 64/180 (35.56%), Postives = 107/180 (59.44%), Query Frame = 3 Query: 156 EAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKP-----HQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDI--MERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 E F TP+QA IP + S +DV + TGSGKT++F++PL+ R A++P +G+I+SPTREL+ QI+ F S P ++S+ GG E+K + I + G ++I TPGR D+ + ++++ + + +V+DEADRL D+GF+ Q++ I+ + ++ LFS+ Sbjct: 254 ELEFTVPTPIQAQAIPAIMSGRDVIGISKTGSGKTVSFILPLL----RQIKAQRPLGGDETGPLGLILSPTRELALQIHEEVTKFTSGDPSIRSLCCTGGSELKRQINDI-KRGVEIVIATPGRFIDLLSLNSGNLINPKRIVFVVMDEADRLFDLGFEPQVNQIMKCIRPDKQCVLFSA 428
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.102e-23 Identity = 66/176 (37.50%), Postives = 107/176 (60.80%), Query Frame = 3 Query: 126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLD--MGFQKQISYIISRLPK 647 L + +L + GFE + +Q+ I + S KDV A +G+GKT F + L++ A RK + +I+SPTREL+SQI V + + +V + + GG +K D+KK+++ G + GTPGR+ D++++ +L RN+++LVLDEAD LL +GF++QI I ++LPK Sbjct: 30 LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQ----AIDLRK-KDLQALILSPTRELASQIGQVVKN-LGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKK-QMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPK 198 The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bpback to top |