FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9404 contig Ccv1_Contig9404:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX4_BOVIN (Probable ATP-dependent RNA helicase DDX4 OS=Bos taurus GN=DDX4 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 65/166 (39.16%), Postives = 108/166 (65.06%), Query Frame = 3
Query:  150 LAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRR----ASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIIS 635
            +A+AG+   TPVQ  +IP++   +D+   A TGSGKT AF++P++  + R    AS  ++  +   +I++PTREL +QIY  A+ F S    V++V++ GG ++   +++I  +G N+L  TPGRL D++ + + +  R ++ LVLDEADR+LDMGF  ++  +IS
Sbjct:  305 IAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKF-SFGTCVRAVVIYGGTQLGHSIRQI-VQGCNILCATPGRLMDVIGK-EKIGLRQVKYLVLDEADRMLDMGFGPEMKKLIS 467          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP10_NEUCR (ATP-dependent RNA helicase dbp-10 OS=Neurospora crassa GN=dbp-10 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 69/183 (37.70%), Postives = 105/183 (57.38%), Query Frame = 3
Query:  126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            L+  +L A+   GF   TP+Q   IPL+   KDV   A TGSGKT AFV+P++E L+  S          +I+SP+REL+ Q   V +  +    D+K+VLLVGG  ++     +     +++I TPGR   +   M+ L   +++ +V DEADRL +MGF  +++ I+  LP  R+T LFS+
Sbjct:  106 LNAHLLRAITRKGFSVPTPIQRKAIPLILERKDVVGMARTGSGKTAAFVIPMIERLKGHSPRVGSR---ALIMSPSRELALQTLKVVKE-LGRGTDLKTVLLVGGDSLEEQFGMM-ASNPDIIIATPGRFLHLKVEMN-LSLASIKYVVFDEADRLFEMGFATELTEILHALPPSRQTLLFSA 282          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: CSHA_BACLD (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=cshA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 68/187 (36.36%), Postives = 108/187 (57.75%), Query Frame = 3
Query:  126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTREL----SSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            LS  + +A+   GFE  TP+QA TIPL  + KDV   A TG+GKT AF +PLVE +   S       I  ++I+PTREL    S ++Y + Q         + + + GG ++   ++ + ++  ++++GTPGRL D + R   +  + +  +VLDEAD +L+MGF + I  I+S +P   +T LFS+
Sbjct:   10 LSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESP-----NIQAIVIAPTRELAIQVSEELYKIGQD-----KRARVLPIYGGQDIGRQIRAL-KKNPHIIVGTPGRLLDHINRR-TMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSA 184          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: PRP5_YARLI (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Yarrowia lipolytica GN=PRP5 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 69/194 (35.57%), Postives = 110/194 (56.70%), Query Frame = 3
Query:  126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPL---------VEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIM--ERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            L  P +  L +  ++  T +QA  IP + S +DV   A TGSGKTLAF++P+         VE      S    H  +G+II+PTREL  QIY   +PF++ L ++ +V   GG  +K  +  + ++G ++++ TPGR+ D++   +  VL    +  LV+DEADR+ DMGF+ Q+  +   +   R+T LFS+
Sbjct:  385 LPGPTMGVLNDLRYDKPTSIQAQAIPAVMSGRDVISVAKTGSGKTLAFLLPMLRHIKHRVGVETHTTTLSGASSHP-LGVIITPTRELCVQIYRDLRPFLAAL-ELTAVCAYGGSPIKDQIAAL-KKGTHIIVCTPGRMIDLLAANQGRVLSLSRVTFLVIDEADRMFDMGFEPQVLKLTQSIRPDRQTVLFSA 575          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DED1_CANAL (ATP-dependent RNA helicase DED1 OS=Candida albicans GN=DED1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 70/199 (35.18%), Postives = 117/199 (58.79%), Query Frame = 3
Query:  120 PALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEI--------LRRASSARKPHQIMG--MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP----KLRRTGLFSS 674
            P L E ++E +  + F   TPVQ  ++P++ + +D+   A TGSGKT  F+ P++          +  ++ A   H++    ++++PTREL SQIY  ++ F S    V++ ++ GG ++   ++ ++  G +LL+ TPGRL D+++R  V    N+  LVLDEADR+LDMGF+ QI YI+        K R+T +FS+
Sbjct:  191 PPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESNGAFSSHKVYPTILVMAPTRELVSQIYEESKKF-SYRSWVRACVVYGGADIGQQMRNMDR-GCDLLVATPGRLKDLLDRGKV-SLANIRYLVLDEADRMLDMGFEPQIRYIVEECDMPAVKDRQTLMFSA 386          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX3X_HUMAN (ATP-dependent RNA helicase DDX3X OS=Homo sapiens GN=DDX3X PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 77/208 (37.02%), Postives = 120/208 (57.69%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV---------EILRRASS----ARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISR---LPK-LRRTGLFSS 674
            FSD++  + E ++  +    +   TPVQ   IP++   +D+   A TGSGKT AF++P++         E LR         R+    + ++++PTREL+ QIY  A+ F S    V+  ++ GG ++   ++ + E G +LL+ TPGRL D+MER  + LDF   + LVLDEADR+LDMGF+ QI  I+ +    PK +R T +FS+
Sbjct:  182 FSDVE--MGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKF-SYRSRVRPCVVYGGADIGQQIRDL-ERGCHLLVATPGRLVDMMERGKIGLDF--CKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSA 383          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX3L_MOUSE (Putative ATP-dependent RNA helicase Pl10 OS=Mus musculus GN=D1Pas1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 77/208 (37.02%), Postives = 120/208 (57.69%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV---------EILR----RASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISR---LPK-LRRTGLFSS 674
            FSD++  + E ++  +    +   TPVQ   IP++   +D+   A TGSGKT AF++P++         E LR         R+    + ++++PTREL+ QIY  A+ F S    V+  ++ GG ++   ++ + E G +LL+ TPGRL D+MER  + LDF   + LVLDEADR+LDMGF+ QI  I+ +    PK +R T +FS+
Sbjct:  181 FSDVE--MGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKF-SYRSRVRPCVVYGGADIGQQIRDL-ERGCHLLVATPGRLVDMMERGKIGLDF--CKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSA 382          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP3_GIBZE (ATP-dependent RNA helicase DBP3 OS=Gibberella zeae GN=DBP3 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 69/174 (39.66%), Postives = 101/174 (58.05%), Query Frame = 3
Query:  159 AGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSS 674
            A ++  TP+Q+A+ P   S +DV   A TGSGKT+AF +P VE    A SA K      +++SPTREL+ Q Y      ++ L  +K V L GG   K D + +   GA++++ TPGRL D M     +D  +    VLDEADR+LD GF++ I  I+S  P  + R+T +F++
Sbjct:  179 ANYKAPTPIQSASWPFTLSGRDVIGVAETGSGKTMAFALPCVE----AISALKHKHTKAVVVSPTRELAMQTYE-QMASVAALNRMKCVCLYGGAS-KDDQRNLLNRGADIIVATPGRLKDFMSD-GTVDLSHSAFAVLDEADRMLDKGFEEDIKMILSSCPPREKRQTLMFTA 345          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: PRP5_ASHGO (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Ashbya gossypii GN=PRP5 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.102e-23
Identity = 64/180 (35.56%), Postives = 107/180 (59.44%), Query Frame = 3
Query:  156 EAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKP-----HQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDI--MERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            E  F   TP+QA  IP + S +DV   + TGSGKT++F++PL+    R   A++P        +G+I+SPTREL+ QI+     F S  P ++S+   GG E+K  +  I + G  ++I TPGR  D+  +   ++++ + +  +V+DEADRL D+GF+ Q++ I+  +   ++  LFS+
Sbjct:  254 ELEFTVPTPIQAQAIPAIMSGRDVIGISKTGSGKTVSFILPLL----RQIKAQRPLGGDETGPLGLILSPTRELALQIHEEVTKFTSGDPSIRSLCCTGGSELKRQINDI-KRGVEIVIATPGRFIDLLSLNSGNLINPKRIVFVVMDEADRLFDLGFEPQVNQIMKCIRPDKQCVLFSA 428          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.102e-23
Identity = 66/176 (37.50%), Postives = 107/176 (60.80%), Query Frame = 3
Query:  126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLD--MGFQKQISYIISRLPK 647
            L + +L  +   GFE  + +Q+  I  + S KDV   A +G+GKT  F + L++    A   RK   +  +I+SPTREL+SQI  V +  +    +V +  + GG  +K D+KK+++ G   + GTPGR+ D++++  +L  RN+++LVLDEAD LL   +GF++QI  I ++LPK
Sbjct:   30 LKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQ----AIDLRK-KDLQALILSPTRELASQIGQVVKN-LGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKK-QMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPK 198          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX4_BOVIN2.405e-2339.16Probable ATP-dependent RNA helicase DDX4 OS=Bos ta... [more]
DBP10_NEUCR2.405e-2337.70ATP-dependent RNA helicase dbp-10 OS=Neurospora cr... [more]
CSHA_BACLD2.405e-2336.36DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
PRP5_YARLI3.141e-2335.57Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
DED1_CANAL3.141e-2335.18ATP-dependent RNA helicase DED1 OS=Candida albican... [more]
DDX3X_HUMAN3.141e-2337.02ATP-dependent RNA helicase DDX3X OS=Homo sapiens G... [more]
DDX3L_MOUSE3.141e-2337.02Putative ATP-dependent RNA helicase Pl10 OS=Mus mu... [more]
DBP3_GIBZE3.141e-2339.66ATP-dependent RNA helicase DBP3 OS=Gibberella zeae... [more]
PRP5_ASHGO4.102e-2335.56Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
FAL1_YEAST4.102e-2337.50ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
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