FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9404 contig Ccv1_Contig9404:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP3_ASPFU (ATP-dependent RNA helicase dbp3 OS=Aspergillus fumigatus GN=dbp3 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.357e-23
Identity = 72/174 (41.38%), Postives = 106/174 (60.92%), Query Frame = 3
Query:  159 AGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV-EILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSS 674
            + F   TP+Q+AT PLL + +DV   A TGSGKTLAF +P + +IL      RK  +   +IISPTREL+ QIY     F +++ D++   + GG  VK D ++   + A +++ TPGRL D+ +   V D   ++ LVLDEADR+LD GF++ I  II   P   R+T +F++
Sbjct:  103 SSFSSPTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPTRELAMQIYDQLSKFGASV-DIRVTCIYGG--VKKDEQREALKTAAIVVATPGRLKDLKDDGSV-DLGKVKYLVLDEADRMLDKGFEQDIKDIIRSTPDSTRQTVMFTA 272          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH52B_ORYSJ (DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica GN=PL10B PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 68/175 (38.86%), Postives = 103/175 (58.86%), Query Frame = 3
Query:  177 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRA-----SSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK----LRRTGLFSS 674
            TPVQ   IP+  + +D+   A TGSGKT AF  P++  + R+     S   +    + +I+SPTRELS QI+  A+ F +    VK V+  GG  +   ++++ E G  +L+ TPGRL D++ER  V   + ++ L LDEADR+LDMGF+ QI  I+ ++       R+T LFS+
Sbjct:  193 TPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMRSRPPPRSRGSRTAYPLALILSPTRELSVQIHEEARKF-AYQTGVKVVVAYGGAPITQQLREL-ERGVEILVATPGRLMDLLERARV-SLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPRGERQTMLFSA 364          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH37_ORYSJ (DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica GN=PL10A PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 66/175 (37.71%), Postives = 104/175 (59.43%), Query Frame = 3
Query:  177 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPH-----QIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPK----LRRTGLFSS 674
            TPVQ   IP+  + +D+   A TGSGKT AF  P++  +  +   ++P        + +I+SPTRELS QI+  A+ F +    V+ V+  GG  +   ++++ E G  +L+ TPGRL D++ER  V   + ++ L LDEADR+LDMGF+ QI  I+ ++      +R+T LFS+
Sbjct:  198 TPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMSSRPPQRPRGSRTAYPLALILSPTRELSVQIHEEARKF-AYQTGVRVVVAYGGAPIHQQLREL-ERGVEILVATPGRLMDLLERARV-SLQMVKYLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSA 369          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DED1_SCHPO (ATP-dependent RNA helicase ded1 OS=Schizosaccharomyces pombe GN=ded1 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 67/184 (36.41%), Postives = 108/184 (58.70%), Query Frame = 3
Query:  120 PALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKP-HQIMGM------------IISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYII 632
            P L+  +L+ +  +G+   TPVQ  +IP++ S +D+   A TGSGKT  F+ P++ +      A  P  Q  GM            I++PTREL  QI+  ++ F      V+   + GG +++A +++I ++G +LL  TPGRL D+++R   +   N++ LVLDEADR+LDMGF+ QI +I+
Sbjct:  174 PPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYR-SWVRPCAVYGGADIRAQIRQI-DQGCDLLSATPGRLVDLIDR-GRISLANIKFLVLDEADRMLDMGFEPQIRHIV 354          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DED1_NEOFI (ATP-dependent RNA helicase ded1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ded1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 71/203 (34.98%), Postives = 118/203 (58.13%), Query Frame = 3
Query:  120 PALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG--------------MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYII--SRLPKL--RRTGLFSS 674
            P L + ++  +  A ++  TPVQ  +IP++ + +D+   A TGSGKT  F+ P++    +   +  P Q  G              +I++PTREL SQI+  A+ F +    V+  ++ GG ++ + +++I E G +LL+ TPGRL D++ER   +   N++ LVLDEADR+LDMGF+ QI  I+    +P +  R+T +FS+
Sbjct:  195 PPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSAVPAQASGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKF-AYRSWVRPCVVYGGADIGSQLRQI-ERGCDLLVATPGRLVDLIER-GRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMFSA 394          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DED1_ASHGO (ATP-dependent RNA helicase DED1 OS=Ashbya gossypii GN=DED1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 69/198 (34.85%), Postives = 117/198 (59.09%), Query Frame = 3
Query:  120 PALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQI---------MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIIS--RLPKL--RRTGLFSS 674
            P L E +LE +  A F   TPVQ  ++P++   +D+   A TGSGKT  F+ P++        A  P +            ++++PTREL++QI+  A+ F +    VK  ++ GG +++  ++++ E G +L++ TPGRL D++ER   +   +++ LVLDEADR+LDMGF+ QI +I+    +P +  R+T +FS+
Sbjct:  151 PPLDELLLENIKLARFTKPTPVQKYSVPIVAKGRDLMACAQTGSGKTGGFLFPVLSQSFSNGPASTPDESGYYMRKAYPTAVVLAPTRELATQIFDEAKKF-TYRSWVKPCVVYGGADIRQQIREL-ERGCDLIVATPGRLNDLLER-GKISLCSVKYLVLDEADRMLDMGFEPQIRHIVEGCDMPTVENRQTLMFSA 345          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX46_DICDI (ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum GN=helB1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 65/185 (35.14%), Postives = 109/185 (58.92%), Query Frame = 3
Query:  126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIM--ERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            L+E V   L +  +E  T +QA TIP + + +D+   A TGSGKTLAF++P+   +     +     ++ +I+SPTREL+ QI HV     S +  +++  + GG  +   + ++ + GA++++ TPGR+ DI+      + + R +  LVLDEADR+ DMGF  QI+ I+  +   R+T +FS+
Sbjct:  516 LTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQPKSAPGEGMIALIMSPTRELALQI-HVECKKFSKVLGLRTACVYGGASISEQIAEL-KRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQTIMFSA 698          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX3Y_PONAB (ATP-dependent RNA helicase DDX3Y OS=Pongo abelii GN=DDX3Y PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 74/208 (35.58%), Postives = 117/208 (56.25%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-------------ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISR---LPK-LRRTGLFSS 674
            FSD+   + E ++  +    +   TPVQ   IP++   +D+   A TGSGKT AF++P++              +       R+    + ++++PTREL+ QIY  A+ F S    V+  ++ GG ++   ++ + E G +LL+ TPGRL D+MER  + LDF   + LVLDEADR+LDMGF+ QI  I+ +    PK +R T +FS+
Sbjct:  180 FSDID--MGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKF-SYRSRVRPCVVYGGADIGQQIRDL-ERGCHLLVATPGRLVDMMERGKIGLDF--CKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSA 381          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX3Y_HUMAN (ATP-dependent RNA helicase DDX3Y OS=Homo sapiens GN=DDX3Y PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 74/208 (35.58%), Postives = 117/208 (56.25%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-------------ILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISR---LPK-LRRTGLFSS 674
            FSD+   + E ++  +    +   TPVQ   IP++   +D+   A TGSGKT AF++P++              +       R+    + ++++PTREL+ QIY  A+ F S    V+  ++ GG ++   ++ + E G +LL+ TPGRL D+MER  + LDF   + LVLDEADR+LDMGF+ QI  I+ +    PK +R T +FS+
Sbjct:  180 FSDID--MGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKF-SYRSRVRPCVVYGGADIGQQIRDL-ERGCHLLVATPGRLVDMMERGKIGLDF--CKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSA 381          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DBP3_EMENI (ATP-dependent RNA helicase dbp3 OS=Emericella nidulans GN=dbp3 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 69/172 (40.12%), Postives = 106/172 (61.63%), Query Frame = 3
Query:  162 GFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSS 674
            GF   T +Q+AT PLL + +DV   A TGSGKTLAF +P ++ +    + +K  + + ++ISPTREL+ QIY     F   + D++   + GG  VK D ++   + A +++ TPGRL D ++    LD   ++ LVLDEADR+LD GF++ I  IIS +P   R+T +F++
Sbjct:   92 GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQKSCRPLAVVISPTRELAMQIYDQLVKFAEKV-DIQVACIFGG--VKKDEQREALKSAAVVVATPGRLKD-LQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTA 259          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP3_ASPFU5.357e-2341.38ATP-dependent RNA helicase dbp3 OS=Aspergillus fum... [more]
RH52B_ORYSJ6.997e-2338.86DEAD-box ATP-dependent RNA helicase 52B OS=Oryza s... [more]
RH37_ORYSJ6.997e-2337.71DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sa... [more]
DED1_SCHPO6.997e-2336.41ATP-dependent RNA helicase ded1 OS=Schizosaccharom... [more]
DED1_NEOFI6.997e-2334.98ATP-dependent RNA helicase ded1 OS=Neosartorya fis... [more]
DED1_ASHGO6.997e-2334.85ATP-dependent RNA helicase DED1 OS=Ashbya gossypii... [more]
DDX46_DICDI6.997e-2335.14ATP-dependent RNA helicase ddx46 OS=Dictyostelium ... [more]
DDX3Y_PONAB6.997e-2335.58ATP-dependent RNA helicase DDX3Y OS=Pongo abelii G... [more]
DDX3Y_HUMAN6.997e-2335.58ATP-dependent RNA helicase DDX3Y OS=Homo sapiens G... [more]
DBP3_EMENI6.997e-2340.12ATP-dependent RNA helicase dbp3 OS=Emericella nidu... [more]

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Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
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