FC868819
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22 Identity = 58/187 (31.02%), Postives = 110/187 (58.82%), Query Frame = 3 Query: 117 KPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQI-MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 K +S ++ LA G P+Q A + KD+ A TG+GKTLAF +P+++ + R + P + + ++++PTREL+ Q+ + S +V+++ + GG + ++++ G +++IGTPGR+ D+++R L+ + +VLDEAD++L +GF + + I+ R+P R+T +FS+ Sbjct: 102 KLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNEKNSPGKFPLAIVLAPTRELAKQV----EREFSDSSNVETICVYGGTPISQQIRQL-NYGVDVVIGTPGRVIDLLKR-GALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFSA 282
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22 Identity = 72/200 (36.00%), Postives = 113/200 (56.50%), Query Frame = 3 Query: 78 PNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVP-LVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 P K + F D +LEA+A+ GF TP+QA P+ +D+ A TGSGKTLA+++P LV + + + I+ +I++PTREL+ QI ++ F V+S + GG ++ + G ++I TPGRL D++E + + + LVLDEADR+LDMGF+ QI I+S++ R+T L+S+ Sbjct: 163 PMKMFQDANFPD-------NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIV-LILAPTRELAVQIQEESRKF-GLRSGVRSTCIYGGAPKGPQIRDL-RRGVEIVIATPGRLIDMLECQHT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSA 351
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22 Identity = 70/199 (35.18%), Postives = 111/199 (55.78%), Query Frame = 3 Query: 78 PNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 P K+ + F D VLE + +AGF TP+Q+ P+ +D+ A TGSGKTL++++P + + + ++++PTREL+ QI A F S+ +K+ + GGV V+ + ++G ++I TPGRL D+ME + + R + LVLDEADR+LDMGF QI I+S + R+T +S+ Sbjct: 97 PVKSFRDVGFPDY-------VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSS-SKIKTTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMMESNNT-NLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSA 285
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DED1_PHANO (ATP-dependent RNA helicase DED1 OS=Phaeosphaeria nodorum GN=DED1 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22 Identity = 70/190 (36.84%), Postives = 112/190 (58.95%), Query Frame = 3 Query: 99 TRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVP-LVEILRRASSARKPHQIMG-----------MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYII 632 TRF++ P L + +L + +G++ TPVQ +IP++ +D+ A TGSGKT F+ P L + + S Q G +I++PTREL SQI+ A+ F + V+ ++ GG ++ + +++I E G +LL+ TPGRL D++ER + +++ LVLDEADR+LDMGF+ QI I+ Sbjct: 201 TRFTN--PPLDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQAFQNGPSPPPTAQAGGYGRQRKAYPTSLILAPTRELVSQIFDEARKF-AYRSWVRPCVVYGGADIGSQLRQI-ERGCDLLVATPGRLVDLIER-GRISLASIKYLVLDEADRMLDMGFEPQIRRIV 385
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DED1_NEUCR (ATP-dependent RNA helicase ded-1 OS=Neurospora crassa GN=ded-1 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22 Identity = 72/201 (35.82%), Postives = 114/201 (56.72%), Query Frame = 3 Query: 120 PALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG------------MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYII--SRLPKL--RRTGLFSS 674 P L ++ + A + TPVQ +IP++ +D+ A TGSGKT F+ P++ + P G +I++PTREL SQIY A+ F + V+ ++ GG ++ + +++IE G +LL+ TPGRL D++ER + N++ LVLDEADR+LDMGF+ QI I+ +PK+ R+T +FS+ Sbjct: 199 PPLDNHLISNIQLARYNVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQSFHTGPSPIPASAAGAYGRQRKAYPTALILAPTRELVSQIYDEARKF-AYRSWVRPCVVYGGADIGSQLRQIER-GCDLLVATPGRLVDLIERGRI-SLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPKVNDRQTLMFSA 396
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DED1_LODEL (ATP-dependent RNA helicase DED1 OS=Lodderomyces elongisporus GN=DED1 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22 Identity = 69/199 (34.67%), Postives = 120/199 (60.30%), Query Frame = 3 Query: 120 PALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--------ILRRASSARKPHQIMG--MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISR--LPKL--RRTGLFSS 674 P L E ++E + + F TPVQ ++P++ + +D+ A TGSGKT F+ P++ + ++ A H++ ++++PTREL SQIY ++ F + V+ ++ GG ++ ++++ + G +LL+ TPGRL D++ER V N++ LVLDEADR+LDMGF+ QI +I+ +P + R+T +FS+ Sbjct: 180 PPLDELLVENIKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMNGPAPIPESTGAFSSHKVYPTILVMAPTRELVSQIYDESKKF-AYRSWVRPCVVYGGADIGNQIRQL-DRGCDLLVATPGRLKDLLERGRV-SLANIKYLVLDEADRMLDMGFEPQIRHIVQECDMPDVQDRQTLMFSA 375
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DED1_ASPCL (ATP-dependent RNA helicase ded1 OS=Aspergillus clavatus GN=ded1 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22 Identity = 71/203 (34.98%), Postives = 117/203 (57.64%), Query Frame = 3 Query: 120 PALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG--------------MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYII--SRLPKL--RRTGLFSS 674 P L + ++ + A ++ TPVQ +IP++ + +D+ A TGSGKT F+ P++ + + P Q G +I++PTREL SQI+ A+ F + V+ ++ GG ++ + +++I E G +LL+ TPGRL D++ER + N+ LVLDEADR+LDMGF+ QI I+ +P + R+T +FS+ Sbjct: 194 PPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQKGPSAVPAQASGQMSYGRQRKAYPTSLILAPTRELVSQIFDEARKF-AYRSWVRPCVVYGGADIGSQLRQI-ERGCDLLVATPGRLVDLIER-GRISLVNINYLVLDEADRMLDMGFEPQIRRIVEGEDMPSVNERQTLMFSA 393
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX54_DICDI (ATP-dependent RNA helicase ddx54 OS=Dictyostelium discoideum GN=helA PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22 Identity = 65/184 (35.33%), Postives = 114/184 (61.96%), Query Frame = 3 Query: 126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 L++ +L+A+ + GF TP+Q +IP++ D+ A TGSGKT AFV+P+++ L S+ + +I+SPTREL+ Q + V + F S ++++L+VGG ++ + +++I TPGRL + ++E + ++ +V DEADRL +MGF +Q++ I+S+L + R+T LFS+ Sbjct: 237 LTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQKLGDHSTT---VGVRAVILSPTRELAIQTFKVVKDF-SQGTQLRTILIVGGDSMEDQFTDL-ARNPDIIIATPGRLMHHLLE--TGMSLSKVQYIVFDEADRLFEMGFNEQLTEILSKLSENRQTLLFSA 413
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX46_DANRE (Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22 Identity = 62/185 (33.51%), Postives = 109/185 (58.92%), Query Frame = 3 Query: 126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD--VLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674 +S VL AL + +E TP+QA IP + S +D+ A TGSGKT+AF++P+ + + + +I++PTREL+ QI + F +L ++ V + GG + + ++ + GA +++ TPGR+ D++ + V + R + +V+DEADR+ DMGF+ Q+ I+ + R+T +FS+ Sbjct: 347 ISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLA-LRVVCVYGGTGISEQIAEL-KRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 529
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX3Y_MOUSE (ATP-dependent RNA helicase DDX3Y OS=Mus musculus GN=Ddx3y PE=1 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22 Identity = 76/208 (36.54%), Postives = 119/208 (57.21%), Query Frame = 3 Query: 105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV---------EILRRASS----ARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISR---LPK-LRRTGLFSS 674 FSD++ + E ++ + + TPVQ IP++ +D+ A TGSGKT AF++P++ E L+ R+ + ++++PTREL+ QIY A+ F S V+ ++ GG + ++ + E G +LL+ TPGRL D+MER + LDF + LVLDEADR+LDMGF+ QI I+ + PK +R T +FS+ Sbjct: 181 FSDIE--MGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKF-SYRSRVRPCVVYGGADTVQQIRDL-ERGCHLLVATPGRLVDMMERGKIGLDF--CKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSA 382 The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bpback to top |