FC868819

Overview
NameFC868819
Unique NameFC868819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9404 contig Ccv1_Contig9404:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22
Identity = 58/187 (31.02%), Postives = 110/187 (58.82%), Query Frame = 3
Query:  117 KPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQI-MGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            K  +S  ++  LA  G     P+Q A +      KD+   A TG+GKTLAF +P+++ + R +    P +  + ++++PTREL+ Q+    +   S   +V+++ + GG  +   ++++   G +++IGTPGR+ D+++R   L+   +  +VLDEAD++L +GF + +  I+ R+P  R+T +FS+
Sbjct:  102 KLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNEKNSPGKFPLAIVLAPTRELAKQV----EREFSDSSNVETICVYGGTPISQQIRQL-NYGVDVVIGTPGRVIDLLKR-GALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFSA 282          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22
Identity = 72/200 (36.00%), Postives = 113/200 (56.50%), Query Frame = 3
Query:   78 PNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVP-LVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            P K   +  F D        +LEA+A+ GF   TP+QA   P+    +D+   A TGSGKTLA+++P LV +  +    +    I+ +I++PTREL+ QI   ++ F      V+S  + GG      ++ +   G  ++I TPGRL D++E     + + +  LVLDEADR+LDMGF+ QI  I+S++   R+T L+S+
Sbjct:  163 PMKMFQDANFPD-------NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIV-LILAPTRELAVQIQEESRKF-GLRSGVRSTCIYGGAPKGPQIRDL-RRGVEIVIATPGRLIDMLECQHT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSA 351          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22
Identity = 70/199 (35.18%), Postives = 111/199 (55.78%), Query Frame = 3
Query:   78 PNKALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            P K+  +  F D        VLE + +AGF   TP+Q+   P+    +D+   A TGSGKTL++++P +  +            + ++++PTREL+ QI   A  F S+   +K+  + GGV     V+ + ++G  ++I TPGRL D+ME  +  + R +  LVLDEADR+LDMGF  QI  I+S +   R+T  +S+
Sbjct:   97 PVKSFRDVGFPDY-------VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSS-SKIKTTCIYGGVPKGPQVRDL-QKGVEIVIATPGRLIDMMESNNT-NLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSA 285          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DED1_PHANO (ATP-dependent RNA helicase DED1 OS=Phaeosphaeria nodorum GN=DED1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22
Identity = 70/190 (36.84%), Postives = 112/190 (58.95%), Query Frame = 3
Query:   99 TRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVP-LVEILRRASSARKPHQIMG-----------MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYII 632
            TRF++  P L + +L  +  +G++  TPVQ  +IP++   +D+   A TGSGKT  F+ P L +  +   S     Q  G           +I++PTREL SQI+  A+ F +    V+  ++ GG ++ + +++I E G +LL+ TPGRL D++ER   +   +++ LVLDEADR+LDMGF+ QI  I+
Sbjct:  201 TRFTN--PPLDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQAFQNGPSPPPTAQAGGYGRQRKAYPTSLILAPTRELVSQIFDEARKF-AYRSWVRPCVVYGGADIGSQLRQI-ERGCDLLVATPGRLVDLIER-GRISLASIKYLVLDEADRMLDMGFEPQIRRIV 385          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DED1_NEUCR (ATP-dependent RNA helicase ded-1 OS=Neurospora crassa GN=ded-1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22
Identity = 72/201 (35.82%), Postives = 114/201 (56.72%), Query Frame = 3
Query:  120 PALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG------------MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYII--SRLPKL--RRTGLFSS 674
            P L   ++  +  A +   TPVQ  +IP++   +D+   A TGSGKT  F+ P++        +  P    G            +I++PTREL SQIY  A+ F +    V+  ++ GG ++ + +++IE  G +LL+ TPGRL D++ER  +    N++ LVLDEADR+LDMGF+ QI  I+    +PK+  R+T +FS+
Sbjct:  199 PPLDNHLISNIQLARYNVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQSFHTGPSPIPASAAGAYGRQRKAYPTALILAPTRELVSQIYDEARKF-AYRSWVRPCVVYGGADIGSQLRQIER-GCDLLVATPGRLVDLIERGRI-SLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPKVNDRQTLMFSA 396          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DED1_LODEL (ATP-dependent RNA helicase DED1 OS=Lodderomyces elongisporus GN=DED1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22
Identity = 69/199 (34.67%), Postives = 120/199 (60.30%), Query Frame = 3
Query:  120 PALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE--------ILRRASSARKPHQIMG--MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISR--LPKL--RRTGLFSS 674
            P L E ++E +  + F   TPVQ  ++P++ + +D+   A TGSGKT  F+ P++          +  ++ A   H++    ++++PTREL SQIY  ++ F +    V+  ++ GG ++   ++++ + G +LL+ TPGRL D++ER  V    N++ LVLDEADR+LDMGF+ QI +I+    +P +  R+T +FS+
Sbjct:  180 PPLDELLVENIKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMNGPAPIPESTGAFSSHKVYPTILVMAPTRELVSQIYDESKKF-AYRSWVRPCVVYGGADIGNQIRQL-DRGCDLLVATPGRLKDLLERGRV-SLANIKYLVLDEADRMLDMGFEPQIRHIVQECDMPDVQDRQTLMFSA 375          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DED1_ASPCL (ATP-dependent RNA helicase ded1 OS=Aspergillus clavatus GN=ded1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22
Identity = 71/203 (34.98%), Postives = 117/203 (57.64%), Query Frame = 3
Query:  120 PALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMG--------------MIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYII--SRLPKL--RRTGLFSS 674
            P L + ++  +  A ++  TPVQ  +IP++ + +D+   A TGSGKT  F+ P++    +   +  P Q  G              +I++PTREL SQI+  A+ F +    V+  ++ GG ++ + +++I E G +LL+ TPGRL D++ER   +   N+  LVLDEADR+LDMGF+ QI  I+    +P +  R+T +FS+
Sbjct:  194 PPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQKGPSAVPAQASGQMSYGRQRKAYPTSLILAPTRELVSQIFDEARKF-AYRSWVRPCVVYGGADIGSQLRQI-ERGCDLLVATPGRLVDLIER-GRISLVNINYLVLDEADRMLDMGFEPQIRRIVEGEDMPSVNERQTLMFSA 393          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX54_DICDI (ATP-dependent RNA helicase ddx54 OS=Dictyostelium discoideum GN=helA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22
Identity = 65/184 (35.33%), Postives = 114/184 (61.96%), Query Frame = 3
Query:  126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDVLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            L++ +L+A+ + GF   TP+Q  +IP++    D+   A TGSGKT AFV+P+++ L   S+      +  +I+SPTREL+ Q + V + F S    ++++L+VGG  ++     +     +++I TPGRL + ++E    +    ++ +V DEADRL +MGF +Q++ I+S+L + R+T LFS+
Sbjct:  237 LTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQKLGDHSTT---VGVRAVILSPTRELAIQTFKVVKDF-SQGTQLRTILIVGGDSMEDQFTDL-ARNPDIIIATPGRLMHHLLE--TGMSLSKVQYIVFDEADRLFEMGFNEQLTEILSKLSENRQTLLFSA 413          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX46_DANRE (Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22
Identity = 62/185 (33.51%), Postives = 109/185 (58.92%), Query Frame = 3
Query:  126 LSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD--VLDFRNLEILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSS 674
            +S  VL AL +  +E  TP+QA  IP + S +D+   A TGSGKT+AF++P+   +       +    + +I++PTREL+ QI    + F  +L  ++ V + GG  +   + ++ + GA +++ TPGR+ D++   +  V + R +  +V+DEADR+ DMGF+ Q+  I+  +   R+T +FS+
Sbjct:  347 ISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLA-LRVVCVYGGTGISEQIAEL-KRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 529          
BLAST of FC868819 vs. ExPASy Swiss-Prot
Match: DDX3Y_MOUSE (ATP-dependent RNA helicase DDX3Y OS=Mus musculus GN=Ddx3y PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22
Identity = 76/208 (36.54%), Postives = 119/208 (57.21%), Query Frame = 3
Query:  105 FSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV---------EILRRASS----ARKPHQIMGMIISPTRELSSQIYHVAQPFISTLPDVKSVLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLEILVLDEADRLLDMGFQKQISYIISR---LPK-LRRTGLFSS 674
            FSD++  + E ++  +    +   TPVQ   IP++   +D+   A TGSGKT AF++P++         E L+         R+    + ++++PTREL+ QIY  A+ F S    V+  ++ GG +    ++ + E G +LL+ TPGRL D+MER  + LDF   + LVLDEADR+LDMGF+ QI  I+ +    PK +R T +FS+
Sbjct:  181 FSDIE--MGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKF-SYRSRVRPCVVYGGADTVQQIRDL-ERGCHLLVATPGRLVDMMERGKIGLDF--CKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSA 382          
The following BLAST results are available for this feature:
BLAST of FC868819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH9_ORYSJ1.193e-2231.02DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sat... [more]
RH30_ARATH1.193e-2236.00DEAD-box ATP-dependent RNA helicase 30 OS=Arabidop... [more]
RH20_ARATH1.193e-2235.18DEAD-box ATP-dependent RNA helicase 20 OS=Arabidop... [more]
DED1_PHANO1.193e-2236.84ATP-dependent RNA helicase DED1 OS=Phaeosphaeria n... [more]
DED1_NEUCR1.193e-2235.82ATP-dependent RNA helicase ded-1 OS=Neurospora cra... [more]
DED1_LODEL1.193e-2234.67ATP-dependent RNA helicase DED1 OS=Lodderomyces el... [more]
DED1_ASPCL1.193e-2234.98ATP-dependent RNA helicase ded1 OS=Aspergillus cla... [more]
DDX54_DICDI1.193e-2235.33ATP-dependent RNA helicase ddx54 OS=Dictyostelium ... [more]
DDX46_DANRE1.193e-2233.51Probable ATP-dependent RNA helicase DDX46 OS=Danio... [more]
DDX3Y_MOUSE1.193e-2236.54ATP-dependent RNA helicase DDX3Y OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionC31005B07EF AbioticL1 Citrus clementina cDNA clone C31005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868819 ID=FC868819; Name=FC868819; organism=Citrus clementina; type=EST; length=685bp
GGTTTTCAGTAGGTATCAATGGATGCTATCTGACTCCGAATCCGCGCTTG
CCTTGAACCGTTAGAATGGAGTCCAACCCGAACAAAGCGTTAACAGAAAC
TCGCTTTTCCGATTTGAAGCCGGCGCTTTCCGAGCCAGTTCTCGAAGCCT
TAGCTGAAGCCGGCTTTGAGTTTTGCACGCCTGTTCAAGCTGCCACAATC
CCTTTGTTATGCAGCTACAAGGACGTAGCCGTGGACGCCGCCACCGGCTC
TGGCAAAACCCTAGCTTTTGTCGTCCCTCTAGTGGAGATCCTCCGCCGTG
CCTCTTCTGCTCGGAAACCCCACCAGATAATGGGGATGATTATCTCACCA
ACAAGGGAGCTATCATCGCAAATATACCATGTTGCACAGCCGTTCATCTC
AACTTTACCGGATGTTAAGTCTGTGCTTCTTGTGGGAGGTGTGGAGGTGA
AAGCAGATGTGAAGAAAATAGAGGAAGAAGGAGCAAATTTGTTGATCGGG
ACACCTGGGAGGCTATATGATATAATGGAACGTATGGATGTCTTGGATTT
TCGGAACCTTGAGATTTTGGTTCTAGATGAGGCTGACAGGCTCTTGGATA
TGGGATTCCAGAAACAGATCAGTTACATCATATCTCGCCTGCCTAAACTT
CGTAGAACTGGCCTTTTTTCNAGCTACTCAACTGA
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