FC868824
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868824 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.580e-20 Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 594 WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G Sbjct: 50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLG 148
BLAST of FC868824 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.580e-20 Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 594 WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G Sbjct: 50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLG 148
BLAST of FC868824 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.464e-19 Identity = 51/113 (45.13%), Postives = 65/113 (57.52%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 624 WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G + PE K+ E VWFK G+ + L+Y G NLV A Sbjct: 50 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNP---NLVHA 156
BLAST of FC868824 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.911e-19 Identity = 49/103 (47.57%), Postives = 61/103 (59.22%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 594 WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G Sbjct: 49 WYGSDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147
BLAST of FC868824 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.149e-18 Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 340 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 594 E P YLTGE PGDYG+D GLS P+ F+K + E+IH+ WAMLGA G + PE ++ G G EAVWFK G+ + L+Y G Sbjct: 5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 88
BLAST of FC868824 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.986e-17 Identity = 50/125 (40.00%), Postives = 68/125 (54.40%), Query Frame = 1 Query: 283 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVL 645 ++YGPD G + + P TGE PGDYG+D GLS P+ F +Y+ ELIHAR +LGA G + PE ++ G G A+WFK GA + LNY G I N+V + ++VL Sbjct: 56 QFYGPDAT----SGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVL 176
BLAST of FC868824 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.978e-16 Identity = 46/103 (44.66%), Postives = 60/103 (58.25%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 594 WYG DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA+ G + PE + G G E VWFK G+ + L++ G Sbjct: 48 WYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFG-EGVWFKAGSQIFSEGGLSHPG 146
BLAST of FC868824 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 7.516e-16 Identity = 43/85 (50.59%), Postives = 52/85 (61.18%), Query Frame = 1 Query: 340 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 594 E P YLTGE PGDYG+D GLS P+ F+K + E+IH+R AM A G I PE + G G EAVWFK GA + L+Y G Sbjct: 68 EWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFG-EAVWFKAGAQIFSEGGLDYLG 151
BLAST of FC868824 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.851e-14 Identity = 45/103 (43.69%), Postives = 56/103 (54.37%), Query Frame = 1 Query: 286 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 594 WYGPDR +L E P YLTGE GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G Sbjct: 48 WYGPDRVKYLGPF---SGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 138
BLAST of FC868824 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.047e-13 Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 1 Query: 295 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 555 PDR ++ P S PE+L G +PGD+G+DP GL P+ EL+H+RWAMLGAAG IPE K G P W+ G Sbjct: 63 PDRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPS--WYTAG 142 The following BLAST results are available for this feature:
BLAST of FC868824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868824 ID=FC868824; Name=FC868824; organism=Citrus clementina; type=EST; length=646bpback to top |