FC868825

Overview
NameFC868825
Unique NameFC868825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig331 contig Ccv1_Contig331:1..638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.374e-35
Identity = 88/223 (39.46%), Postives = 117/223 (52.47%), Query Frame = 2
Query:   65 SVADLVTPEFFDGIK-NQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSALN---------------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYC 616
            +V  +V+ E F+ +  ++  A C  +GFYT DA ++A +++P+F  T      KREVAAF    +HETT              +CF EEI  T  YC P+ ++PCA  K Y+GRGPIQL+ N NY  AG AIG D LN+PE VA D V+SFKTALW+WM         H  +                 G+G     ING  ECG     +V +R+  Y  YC
Sbjct:   85 AVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYC 307          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.019e-35
Identity = 84/224 (37.50%), Postives = 120/224 (53.57%), Query Frame = 2
Query:   62 NSVADLVTPEFFDGIK-NQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALN------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYC 616
            + V  +V  + F+ +  ++    C  +GFYT +AF++A +++P FG T      KREVAAF    +HETT              +CF +E +  + YC P+P++PCA G+ YYGRGPIQL+ N NY  AGRAIG D L++P+ VA D  +SFKTALW+WM               R+  S  +       G+G     +NG  ECG     +V +R+  Y  YC
Sbjct:   87 DGVGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYC 310          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.564e-34
Identity = 84/223 (37.67%), Postives = 116/223 (52.02%), Query Frame = 2
Query:   68 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD--------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSAL---------------NQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYC 616
            + +L++ E F+  + ++    C  +GFYT DAFI+A  S+P F  T      KRE+AAF A  +HETT               +C+  E++  + YC   P YPCA GK Y+GRGP+QL+ N NY   GRAIG D LN+P+ ++ D  ISFK+A W+WM         H+ +                 G+G     ING  ECG    AQV+DR+  Y  YC
Sbjct:   52 LTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYC 274          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.564e-34
Identity = 91/223 (40.81%), Postives = 116/223 (52.02%), Query Frame = 2
Query:   77 LVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD--------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRL 625
            L+T E FD  + ++    C  +GFYT DAFI+A  S+P F  T      KREVAAF A  +HETT               +C+  E++  + YC   P YPCA GK Y+GRGP+QLT N NY   GRAIG D LN+P+ +A D  ISFK+A W+WM                +  S  +Q      GFG     ING  ECG    A+V+DR+  Y  YC  L
Sbjct:   75 LITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWAAPDGPYTWGYCYNRELNPAD-YCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTL 296          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.042e-34
Identity = 84/223 (37.67%), Postives = 116/223 (52.02%), Query Frame = 2
Query:   68 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD--------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSAL---------------NQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYC 616
            + +L++ E F+  + ++    C  +GFYT DAFI+A  S+P F  T      KRE+AAF A  +HETT               +C+  E++  + YC   P YPCA GK Y+GRGP+QL+ N NY   GRAIG D LN+P+ ++ D  ISFK+A W+WM         H+ +                 G+G     ING  ECG    AQV+DR+  Y  YC
Sbjct:   74 LTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYC 296          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.014e-33
Identity = 87/229 (37.99%), Postives = 119/229 (51.97%), Query Frame = 2
Query:   62 NSVADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKT--NPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSALN---------------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRL 625
            + VA +V+   FD  + ++  A C  K FYT DAF++A +++P F  T      KREVAAF A  +HETT              +CF EE +    + YC  + Q+PCA GK YYGRGPIQ++ N NY  AG+AIG + L++P+ VA D  +SFKTA W+WM         H+ +                 G+G     ING  ECG    ++V DR+  Y  YC  L
Sbjct:   77 SGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDML 305          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.580e-33
Identity = 91/233 (39.06%), Postives = 117/233 (50.21%), Query Frame = 2
Query:   38 IPRNVVCQNSVADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCK 619
            IP        V  LV    FD  +K +    C G GFYT DAFI+A  S+  FG T      K+E+AAF A  +HETT              +CFV E +    YC+P   +PCA GK YYGRGPIQLT N NY  AG+AI  D +N+P+ ++ +  +SFKTA+W+WM               R+  SA +       G+G     ING  ECG     +V DRV  Y  YC+
Sbjct:   70 IPTPSTGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPK-DWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQ 301          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.121e-32
Identity = 91/227 (40.09%), Postives = 116/227 (51.10%), Query Frame = 2
Query:   62 NSVADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEF----GRTDT-KREVAAFFAHVTHETTD-------------FCFVEEISKTN--PYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYC 616
            + VA +V+   FD  + ++  A C    FYT DAF++A S++P F    G  DT KREVAAF A  +HETT              +CF EE        YC  + Q+PCA GK YYGRGPIQL+ N NY  AG+AIG D L  P+ VA D  +SF TA W+WM               ++  SA +Q      G+G     ING  ECG     +V DR+  Y  YC
Sbjct:   79 SGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYC 305          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.911e-32
Identity = 84/226 (37.17%), Postives = 118/226 (52.21%), Query Frame = 2
Query:   65 SVADLVTPEFFDGIK-NQAPATCEGKGFYTRDAFISALSSYPEFGRT-DTK---REVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRL 625
            +++ L++   F+ I  ++    C  KGFYT +AFI+A  ++  FG T DT    +E+AAF A  +HETT              +C+  E      YC  + Q+PCA GK Y+GRGPIQ++ N NY  AG AIG + LN+P+ VA D V+SFKTALW+WM               R+  S  +       GFG     ING  EC   + A + +R+  Y  YC+ L
Sbjct:    4 NISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQIL 229          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.258e-32
Identity = 85/209 (40.67%), Postives = 112/209 (53.59%), Query Frame = 2
Query:   68 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT--DT--KREVAAFFAHVTHETTDFCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALN------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYC 616
            V  +VT + F+  +KN+    C  KGFYT DAFI+A +S+P FG T  DT  K+E+AAFF   +HETT      +      YC         +G  +YGRGPIQLTG  NY  AG+AIG D +N+P+ VA D  +SFKTA+W+WM               ++  SA +       G+G     ING  ECG     QV+DR+  Y  YC
Sbjct:   19 VGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSADGPFAGGYCFVREGNQMGSG--FYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYC 225          
The following BLAST results are available for this feature:
BLAST of FC868825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI9_ORYSJ5.374e-3539.46Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_ORYSJ7.019e-3537.50Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_GOSHI1.564e-3437.67Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_THECC1.564e-3440.81Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI1_GOSHI2.042e-3437.67Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI1_ORYSJ1.014e-3337.99Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIX_PEA8.580e-3339.06Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI12_ORYSJ1.121e-3240.09Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHID_SOLLC1.911e-3237.17Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIB_SOLLC4.258e-3240.67Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionC31005C03EF AbioticL1 Citrus clementina cDNA clone C31005C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868825 ID=FC868825; Name=FC868825; organism=Citrus clementina; type=EST; length=638bp
TCTTTTCCTGGGGTTACTTCTACTTGCCTTAGCCAACATTCCCAGAAATG
TAGTGTGTCAAAACTCCGTAGCCGATCTTGTGACTCCGGAATTTTTTGAC
GGCATTAAGAATCAGGCTCCAGCAACTTGTGAAGGGAAGGGGTTCTATAC
AAGAGATGCATTTATTAGTGCTCTCAGTTCATATCCTGAATTCGGTAGAA
CTGATACTAAGCGTGAAGTTGCCGCATTTTTTGCCCATGTCACTCATGAA
ACAACAGATTTTTGCTTCGTAGAAGAGATTAGTAAGACAAATCCTTATTG
TACACCGACTCCTCAATATCCATGTGCCAATGGTAAATTCTACTATGGCC
GGGGACCGATTCAGCTCACCGGAAACGGAAACTACATAGATGCCGGAAGG
GCCATCGGTTTCGACGGTCTGAACTCTCCGGAAACGGTGGCCAGGGACCG
TGTCATATCTTTCAAGACTGCTTTGTGGTATTGGATGAGATACGTGCACT
CAGCACTAAACCAAGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCT
GCTGAATGCGGCGGCCAAAACCGTGCACAAGTTCAGGATCGCGTTAGGCG
TTACACTGATTATTGCAAAAGATTGGTGTTGATCCTGG
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