FC868825

Overview
NameFC868825
Unique NameFC868825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig331 contig Ccv1_Contig331:1..638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.487e-32
Identity = 83/226 (36.73%), Postives = 118/226 (52.21%), Query Frame = 2
Query:   68 VADLVTPEFFDGI-KNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTP-QYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM--RYVHSALNQ-------------------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRL 625
            V+ +V+ + +  +  ++  A C  +GFYT  +F+ A + +P F  T      KREVAAF A ++HETT               C+ EEI+  + YC  T  Q+PC  GK Y+GRGPIQ++ N NY  AG+A+GFDGL +PE VA    I+F+TALW+WM  R    + +Q                   GFG     +NG  EC     A+V +R+  Y  YC+ L
Sbjct:   49 VSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVL 274          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.708e-31
Identity = 85/206 (41.26%), Postives = 110/206 (53.40%), Query Frame = 2
Query:   65 SVADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT--DT--KREVAAFFAHVTHETTDFCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALN------QGFGETIRKINGPAECGGQNRAQVQDRVRRY 604
            +V  +VT + FD  +KN+  A C    FYT DAFI+A +S+P FG T  DT  K+E+AAFF   +HETT      +      YC         NG  YYGRGPIQLTG  NY  AG+AI  D +N+P+ VA D  +SFKTA+W+WM               R+  SA +       G+G     ING  ECG    A+V+DR+  Y
Sbjct:   25 NVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTLSPDGPYAGGYCFLREGNQMGNG--YYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYY 228          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.049e-30
Identity = 88/226 (38.94%), Postives = 116/226 (51.33%), Query Frame = 2
Query:   68 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTD-----TKREVAAFFAHVTHETTD------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALN------QGFGETIRKINGPAECG-GQNRAQVQDRVRRYTDYCKRL 625
            V  ++T   F+  + N+  + C  +GFYT DAFI+A +S+P FG +       +RE+AAFF   +HETT             +CF EEI+K     T  P         YYGRGPIQLTG  NY  AG A+G D + +P+ V+ D V+SFKTA+W+WM               R+  SA +       G+G     ING  ECG GQN A V DR+  Y  YC  L
Sbjct:   32 VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGSSDQFQWGYCFKEEINKA----TSPP---------YYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANV-DRIGYYKRYCDML 243          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.370e-30
Identity = 84/226 (37.17%), Postives = 111/226 (49.12%), Query Frame = 2
Query:   68 VADLVTPEFFDGI-KNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR------YVHSALN---------------QGFGETIRKINGPAECG-GQNRAQVQDRVRRYTDYCKRL 625
            ++D++    FD + K +  A C   GFYT +AFISA   +P+FG T      KRE+AAF    +HETT              +C+++EI+   PYC P+  Y C  GK Y GRGPIQL+ N NY   G  +    L  PE V  D VISFKTA+W+WM+        H+ +                 G+G     ING  ECG G   A  +DR+  Y  YC  L
Sbjct:   89 LSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSL 313          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.337e-30
Identity = 86/212 (40.57%), Postives = 108/212 (50.94%), Query Frame = 2
Query:   68 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT--DTKR--EVAAFFAHVTHETTDFCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRL 625
            +  +VT + F+  +KN+    C   GFYT DAFI+A +S+P FG T  DT R  E+AAFF   +HETT      E   T  YC             YYGRGPIQLT   NY  AG AIG + +N+P+ VA D  ISFKTA+W+WM               R+  SA +Q      G+G     ING  ECG      V+DR+  Y  YC  L
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE-PFTGGYCFVRQN---DQSDRYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGML 234          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.407e-29
Identity = 80/216 (37.04%), Postives = 110/216 (50.93%), Query Frame = 2
Query:   68 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT---DT-KREVAAFFAHVTHETTD------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR-------YVHSALN---------------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYC 616
            VA +VT + F+  + ++  A C  +GFY   AF++A  ++P F  T   DT KREVAAF A  +H T+       +C+ E    T+ +C P  ++PCA GK Y+ RGP+Q+  N NY  AG AIG D L +PE VA D  ++FKTALW WM          H+ +                 G+G T   + G  +C G N     DRV  Y  YC
Sbjct:   97 VASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYC 310          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.407e-29
Identity = 80/216 (37.04%), Postives = 110/216 (50.93%), Query Frame = 2
Query:   68 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT---DT-KREVAAFFAHVTHETTD------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR-------YVHSALN---------------QGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYC 616
            VA +VT + F+  + ++  A C  +GFY   AF++A  ++P F  T   DT KREVAAF A  +H T+       +C+ E    T+ +C P  ++PCA GK Y+ RGP+Q+  N NY  AG AIG D L +PE VA D  ++FKTALW WM          H+ +                 G+G T   + G  +C G N     DRV  Y  YC
Sbjct:   97 VASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYC 310          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.517e-29
Identity = 83/212 (39.15%), Postives = 105/212 (49.53%), Query Frame = 2
Query:   68 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGR----TDTKREVAAFFAHVTHETTDFCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRL 625
            +  +VT + F+  +KN+    C   GFYT DAFI+A +S+P FG     T  ++E+AAFF   +HETT      E   T  YC             YYGRGPIQLT   NY  AG AI  D +N+P+ VA D  ISFKTA+W+WM                +  SA +Q      G G     ING  ECG    A V+DR+  Y  YC  L
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE-PFTGGYCFVRQN---DQSDRYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGML 234          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.125e-27
Identity = 76/215 (35.35%), Postives = 102/215 (47.44%), Query Frame = 2
Query:  104 IKNQAPATCEGKGFYTRDAFISALSSYPEFGRT---DT-KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQ--YPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR----------------------YVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRL 625
            + N+   +C GKGFYT DA+  A   YP FG T   DT KRE+AAFFA  + ET+              +C V E++  + YC P  +  YPC     YYGRGP+QL  N NY + G  +G + L+ PE VA D V+SF+ ALW+WM                        + +    GFG     I    EC    + + Q+R+  Y  YC  L
Sbjct:   76 LPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVAD--YYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDML 288          
BLAST of FC868825 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.016e-25
Identity = 80/224 (35.71%), Postives = 110/224 (49.11%), Query Frame = 2
Query:   65 SVADLVTPEFFDGIKN-QAPATCEGKGFYTRDAFISALSSYPEFGRT--DT--KREVAAFFAHVTHETTD---------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGF--DGLNSPETVARDRVISFKTALWYWMRY-------------------VHSALNQ--GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRL 625
            +   +VT E F+ + + +    C  KGFYT DAFI+A +S+P FG T  DT  K+E+AAFF   +HET           +CFV +I +++ Y               YGRGPIQLT   NY  AG+ IG   D +N+P+ VA D +ISF+TA+W+WM                       +A N+  G+G     ING  EC       V+ R+  Y  YC  L
Sbjct:   26 NAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGGSAGTFTGGYCFVRQIDQSDRY---------------YGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGML 234          
The following BLAST results are available for this feature:
BLAST of FC868825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI10_ORYSJ9.487e-3236.73Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_PETHY4.708e-3141.26Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI8_ORYSJ1.049e-3038.94Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI6_POPTR1.370e-3037.17Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIQ_TOBAC2.337e-3040.57Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI7_ORYSJ4.407e-2937.04Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI4.407e-2937.04Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIP_TOBAC7.517e-2939.15Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI8_POPTR4.125e-2735.35Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIA_SOLCI1.016e-2535.71Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31005C03EF AbioticL1 Citrus clementina cDNA clone C31005C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868825 ID=FC868825; Name=FC868825; organism=Citrus clementina; type=EST; length=638bp
TCTTTTCCTGGGGTTACTTCTACTTGCCTTAGCCAACATTCCCAGAAATG
TAGTGTGTCAAAACTCCGTAGCCGATCTTGTGACTCCGGAATTTTTTGAC
GGCATTAAGAATCAGGCTCCAGCAACTTGTGAAGGGAAGGGGTTCTATAC
AAGAGATGCATTTATTAGTGCTCTCAGTTCATATCCTGAATTCGGTAGAA
CTGATACTAAGCGTGAAGTTGCCGCATTTTTTGCCCATGTCACTCATGAA
ACAACAGATTTTTGCTTCGTAGAAGAGATTAGTAAGACAAATCCTTATTG
TACACCGACTCCTCAATATCCATGTGCCAATGGTAAATTCTACTATGGCC
GGGGACCGATTCAGCTCACCGGAAACGGAAACTACATAGATGCCGGAAGG
GCCATCGGTTTCGACGGTCTGAACTCTCCGGAAACGGTGGCCAGGGACCG
TGTCATATCTTTCAAGACTGCTTTGTGGTATTGGATGAGATACGTGCACT
CAGCACTAAACCAAGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCT
GCTGAATGCGGCGGCCAAAACCGTGCACAAGTTCAGGATCGCGTTAGGCG
TTACACTGATTATTGCAAAAGATTGGTGTTGATCCTGG
back to top