FC868826

Overview
NameFC868826
Unique NameFC868826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9405 contig Ccv1_Contig9405:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC868826 vs. ExPASy Swiss-Prot
Match: SWI3C_ARATH (SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 37/99 (37.37%), Postives = 63/99 (63.64%), Query Frame = 1 
Query:  142 DVVNV-PSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVG-DVGSIRRVFDFLETWGLINYFASVKT 432
            D+V+V P +S WF+ +++   E + +P+FF  +SP+  P  Y  +R++IV  Y ENP + +T +D +  + G D+    RVF FL+ WG+INY A+ ++
Sbjct:  173 DLVHVLPMHSDWFAPNTVDRLERQVVPQFFSGKSPNHTPESYMEFRNAIVSKYVENPEKTLTISDCQGLVDGVDIEDFARVFRFLDHWGIINYCATAQS 271
The following BLAST results are available for this feature:
BLAST of FC868826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SWI3C_ARATH4.924e-1437.37SWI/SNF complex subunit SWI3C OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionC31005C04EF AbioticL1 Citrus clementina cDNA clone C31005C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868826 ID=FC868826; Name=FC868826; organism=Citrus clementina; type=EST; length=715bp
GGTTGGGAATGCTAGCGAATTTATCATCTCATGGCGGCTAAATCGCCCGT
TAAAGAACCTCCGGGAACGTCCGCCGTTAACCCCACCACTCCTCTTGCGC
CTCCACCCGTCAAGCCCGAGCTACCCTCTTCCTCCGAACCCGACGTCGTT
AACGTCCCCAGCTATTCCAGGTGGTTTTCATTTGACAGCATCAGTGAATG
TGAGGTCAAATTTCTTCCGGAATTTTTCGATTCGCGTTCGCCTTCGAAAA
ACCCTAGGGTTTACAGGTACTATAGGGATTCAATAGTCAAGCATTATAGA
GAGAACCCGTCGAGGAAGATTACGTTTACCGACGTGAGGAGGACTCTTGT
CGGCGATGTGGGATCTATTCGAAGGGTGTTTGATTTCTTGGAGACTTGGG
GACTTATTAATTACTTTGCTTCTGTTAAGACCTTGAAGTGGGAAGATAAA
GAGACCAAGTCCTCTGCTGCTTCTGCTGAATCCTCCTCCGCTCTTAAGGA
GACCTCTAAGAGGCTCTGCAATGGTTGCAAGACCCTTTGTACCATTGCTT
GTTTTGCTTGTGATAAGTATGACTTGACCCTTTGTGCGAGATGCTATGTC
CNGTGGTACCATCGGGTGGGTGTTAGCTCGTCTGATTTCAGGCGGGTCGA
GATCAGTGAGGAGGCTAGATCGGATTGGACAGAGAAAGAAACTTTGCACT
TCTGGAGCCATTATG
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