FC868829

Overview
NameFC868829
Unique NameFC868829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14506 contig Ccv1_Contig14506:306..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: HTRA2_HUMAN (Serine protease HTRA2, mitochondrial OS=Homo sapiens GN=HTRA2 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.825e-18
Identity = 50/128 (39.06%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  150 EVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAIN 533
            EVP  +GSGFV  + G +VTN HV+     +RV       Y+A +   D   D+A LRI   K+ L  +P+G SAD+  G+ V A+G+PF L +T+T+G++S  +R        +   + IQTDAAI+
Sbjct:  176 EVPISNGSGFVVAADGLIVTNAHVVADRRRVRVRLLSGDTYEAVVTAVDPVADIATLRIQT-KEPLPTLPLGRSADVRQGEFVVAMGSPFALQNTITSGIVSSAQRPARDLGLPQTNVEYIQTDAAID 302          
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: YVTA_BACSU (Uncharacterized serine protease yvtA OS=Bacillus subtilis GN=yvtA PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.230e-18
Identity = 66/189 (34.92%), Postives = 98/189 (51.85%), Query Frame = 3
Query:   24 SPQRKLQTDELATVRL---------FQENTPSVVNITNLAARQD-AFTL---DVLEVPQGSGSGFVW---DSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFG--LDHTLTTGVISGLRREISSAAT-GRPIQDVIQTDAAIN 533
            S  +++Q+D   T  +          ++  P++V I+N+   Q+  F        E   G+GSG ++     K +++TN HV+ GA+ + VT  +     AK+VG D   D+AVL I   K+  +    G S+ L  G+KV AIGNP G     T+T G+ISGL R I    T G    +V+QTDAAIN
Sbjct:  107 SANKQVQSDNFTTAPITNASNIADMVEDLEPTIVGISNIQTSQNNTFGTGGGSSSESESGTGSGVIFKKDSDKAYIITNNHVVEGANKLTVTLYNGETETAKLVGSDTITDLAVLEISG-KNVKKVASFGDSSQLRTGEKVIAIGNPLGQQFSGTVTQGIISGLNRTIDVDTTQGTVEMNVLQTDAAIN 294          
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: HTRA1_MOUSE (Serine protease HTRA1 OS=Mus musculus GN=Htra1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.230e-18
Identity = 50/128 (39.06%), Postives = 76/128 (59.38%), Query Frame = 3
Query:  150 EVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAIN 533
            EVP  SGSGF+    G +VTN HV+   + ++V   + + Y+A I   D+  D+A+++ID  + KL  + +G S++L  G+ V AIG+PF L +T+TTG++S  +R            D IQTDA IN
Sbjct:  198 EVPVASGSGFIVSEDGLIVTNAHVVTNKNRVKVELKNGATYEAIIKDVDEKADIALIKID-HQGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIIN 324          
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: DEGS_ECOLI (Protease degS OS=Escherichia coli (strain K12) GN=degS PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.230e-18
Identity = 67/192 (34.90%), Postives = 95/192 (49.48%), Query Frame = 3
Query:   87 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---ASSGVGFSIQLTL 653
            P+VVN+ N     ++   + LE+ +  GSG + D +G+++TN HVI  A  I V   D   ++A +VG D   D+AVL+I+A    L  IPI       +G  V AIGNP+ L  T+T G+IS   R I    TGR  Q+ +QTDA+IN                   T  +  S       G+GF+I   L
Sbjct:   56 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR-IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQL 240          
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: DEGS_ECO57 (Protease degS OS=Escherichia coli O157:H7 GN=degS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.230e-18
Identity = 67/192 (34.90%), Postives = 95/192 (49.48%), Query Frame = 3
Query:   87 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---ASSGVGFSIQLTL 653
            P+VVN+ N     ++   + LE+ +  GSG + D +G+++TN HVI  A  I V   D   ++A +VG D   D+AVL+I+A    L  IPI       +G  V AIGNP+ L  T+T G+IS   R I    TGR  Q+ +QTDA+IN                   T  +  S       G+GF+I   L
Sbjct:   56 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR-IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQL 240          
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: DEGS_HAEIN (Protease degS OS=Haemophilus influenzae GN=degS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.099e-17
Identity = 56/151 (37.09%), Postives = 85/151 (56.29%), Query Frame = 3
Query:   84 TPSVVNITNLAARQDAFT-LDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAIN 533
            +P+VVN+ N +    +    D L+V    GSG +    G+++TN H+I+ A  I V   + + ++A +VG D   D+AVL+I A  D L  IP   +    VG  V AIGNP+ L  +++ G+IS + R     + GR  Q+ IQTDA+IN
Sbjct:   48 SPAVVNVYNRSFSSASINDNDQLQV-NNLGSGVIMSKDGYILTNKHLIQNADQIVVALQNGNIFEASLVGSDDLTDLAVLKIRA--DNLSTIPQNSARQAHVGDVVLAIGNPYNLGQSVSQGIISAIGRNAVGDSVGR--QNFIQTDASIN 193          
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: HTRA_LACHE (Serine protease do-like htrA OS=Lactobacillus helveticus GN=htrA PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.552e-16
Identity = 56/127 (44.09%), Postives = 78/127 (61.42%), Query Frame = 3
Query:  168 GSGFVW---DSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDH--TLTTGVISGLRREISSAATGRPIQDVIQTDAAIN 533
            GSG V+   + KG++VTN HVI G+  ++V  A+    +AK+VG D   D+AVL IDA K   +    G S  L  GQ V A+G+P G ++  T+T G+IS   R IS+++  +  Q VIQTDAAIN
Sbjct:  131 GSGVVYMKSNGKGYIVTNNHVISGSDAVQVLLANGKTVNAKVVGKDSTTDLAVLSIDA-KYVTQTAQFGDSKHLEAGQTVIAVGSPLGSEYASTVTQGIISAPARTISTSSGNQ--QTVIQTDAAIN 254          
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: HTRA4_HUMAN (Probable serine protease HTRA4 OS=Homo sapiens GN=HTRA4 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.453e-14
Identity = 45/127 (35.43%), Postives = 70/127 (55.12%), Query Frame = 3
Query:  153 VPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAIN 533
            VP  SGSGF+    G ++TN HV+R    I V   + + Y+A +   D   D+AV++I++   +L  + +G S+DL  G+ V A+G+PF L +T T G++S  +R            D +Q DA IN
Sbjct:  197 VPVYSGSGFIVSEDGLIITNAHVVRNQQWIEVVLQNGARYEAVVKDIDLKLDLAVIKIES-NAELPVLMLGRSSDLRAGEFVVALGSPFSLQNTATAGIVSTKQRGGKELGMKDSDMDYVQIDATIN 322          
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: HTRAL_STAAW (Serine protease htrA-like OS=Staphylococcus aureus (strain MW2) GN=MW0903 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14
Identity = 43/143 (30.07%), Postives = 79/143 (55.24%), Query Frame = 3
Query:   60 TVRLFQENTPSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKG---HVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDH--TLTTGVISGLRREI 473
            T++       SVV + N  ++  +   D     +  GSG V+   G   ++VTN HV+    + ++TF++  +   K++G D+  D+AV++  +    ++ I IG S +L++G+ +  +GNP G+D   T+T G+ISGL R +
Sbjct:  450 TMKNANNTVKSVVTVENETSKDSSLPKDKASQDE-VGSGVVYKKSGDTLYIVTNAHVVGDKENQKITFSNNKSVVGKVLGKDKWSDLAVVKATSSDSSVKEIAIGDSNNLVLGEPILVVGNPLGVDFKGTVTEGIISGLNRNV 591          
BLAST of FC868829 vs. ExPASy Swiss-Prot
Match: HTRAL_STAAS (Serine protease htrA-like OS=Staphylococcus aureus (strain MSSA476) GN=SAS0955 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14
Identity = 43/143 (30.07%), Postives = 79/143 (55.24%), Query Frame = 3
Query:   60 TVRLFQENTPSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKG---HVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDH--TLTTGVISGLRREI 473
            T++       SVV + N  ++  +   D     +  GSG V+   G   ++VTN HV+    + ++TF++  +   K++G D+  D+AV++  +    ++ I IG S +L++G+ +  +GNP G+D   T+T G+ISGL R +
Sbjct:  450 TMKNANNTVKSVVTVENETSKDSSLPKDKASQDE-VGSGVVYKKSGDTLYIVTNAHVVGDKENQKITFSNNKSVVGKVLGKDKWSDLAVVKATSSDSSVKEIAIGDSNNLVLGEPILVVGNPLGVDFKGTVTEGIISGLNRNV 591          
The following BLAST results are available for this feature:
BLAST of FC868829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
HTRA2_HUMAN4.825e-1839.06Serine protease HTRA2, mitochondrial OS=Homo sapie... [more]
YVTA_BACSU8.230e-1834.92Uncharacterized serine protease yvtA OS=Bacillus s... [more]
HTRA1_MOUSE8.230e-1839.06Serine protease HTRA1 OS=Mus musculus GN=Htra1 PE=... [more]
DEGS_ECOLI8.230e-1834.90Protease degS OS=Escherichia coli (strain K12) GN=... [more]
DEGS_ECO578.230e-1834.90Protease degS OS=Escherichia coli O157:H7 GN=degS ... [more]
DEGS_HAEIN9.099e-1737.09Protease degS OS=Haemophilus influenzae GN=degS PE... [more]
HTRA_LACHE1.552e-1644.09Serine protease do-like htrA OS=Lactobacillus helv... [more]
HTRA4_HUMAN1.453e-1435.43Probable serine protease HTRA4 OS=Homo sapiens GN=... [more]
HTRAL_STAAW9.416e-1430.07Serine protease htrA-like OS=Staphylococcus aureus... [more]
HTRAL_STAAS9.416e-1430.07Serine protease htrA-like OS=Staphylococcus aureus... [more]

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Properties
Property NameValue
Genbank descriptionC31005C10EF AbioticL1 Citrus clementina cDNA clone C31005C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868829 ID=FC868829; Name=FC868829; organism=Citrus clementina; type=EST; length=661bp
ATTCCGCGTCGGCTTTCGTCGTCTCTCCGCAACGTAAGCTTCAAACCGAC
GAACTCGCTACCGTTCGTCTCTTTCAAGAGAACACTCCTTCTGTTGTTAA
TATCACCAATCTTGCTGCCAGGCAGGATGCATTTACACTGGATGTGTTGG
AGGTCCCACAAGGATCCGGTTCGGGTTTTGTCTGGGATTCCAAAGGTCAC
GTTGTCACCAATTATCATGTGATTCGTGGTGCTTCTGATATCAGGGTCAC
TTTTGCTGATCAATCAGCTTATGATGCGAAAATTGTTGGATTTGACCAAG
ACAAGGATGTTGCTGTGTTGCGTATTGATGCACCGAAAGATAAATTAAGA
CCTATTCCTATTGGTGTCTCTGCAGACTTGCTTGTTGGTCAGAAAGTATA
TGCTATTGGCAACCCCTTTGGACTCGACCATACCCTTACAACTGGCGTGA
TCAGTGGGCTTCGTAGGGAAATCAGTTCTGCAGCCACTGGCCGTCCAATT
CAGGATGTTATACAAACTGATGCGGCCATTAATCCTGGTAATAGTGGAGG
ACCACTTTTAGATAGTTCAGGAAGCCTAATTGGAATAAATACAGCTATAT
ACTCTCCATCTGGTGCATCCTCTGGTGTTGGATTTTCGATTCAGTTGACA
CTGTAAATGGC
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