FC868835

Overview
NameFC868835
Unique NameFC868835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15453 contig Ccv1_Contig15453:46..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NFU1_MOUSE (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Mus musculus GN=Nfu1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 1
Query:  445 IESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEE 660
            I+ +LD  IRP +  DGG+V     +  +VRLKLQG+C SCPSS++T+K GI+  L   IPE+  VE V D++
Sbjct:  173 IKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQVMDDD 245          
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NFU1_HUMAN (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Homo sapiens GN=NFU1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = 1
Query:  445 IESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEET 663
            I+ +LD  IRP +  DGG+V     +  +V+LKLQG+C SCPSS++T+K GI+  L   IPE+  VE V D+E+
Sbjct:  173 IKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEVEGVEQVMDDES 246          
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NFU1_DROYA (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila yakuba GN=GE15286 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  433 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE 657
            T   I+ +LD  IRP +  DGG++     +  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE
Sbjct:  178 TVMMIKELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDE 253          
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NFU1_DROSI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila simulans GN=GD15490 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  433 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE 657
            T   I+ +LD  IRP +  DGG++     +  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE
Sbjct:  178 TVMMIKELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDE 253          
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NFU1_DROSE (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila sechellia GN=GM13534 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  433 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE 657
            T   I+ +LD  IRP +  DGG++     +  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE
Sbjct:  178 TVMMIKELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDE 253          
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NFU1_DROER (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila erecta GN=GG17526 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  433 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE 657
            T   I+ +LD  IRP +  DGG++     +  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE
Sbjct:  178 TVMMIKELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDE 253          
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NIFU_PLEBO (Nitrogen fixation protein nifU (Fragment) OS=Plectonema boryanum GN=nifU PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 37/90 (41.11%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  394 AVATPDSAIELPLTAEN----IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 648
            A    ++ I  PLT       I+ VLDE +RP LI+DGG+V L+++DG+ V++ L+GACGSC SS  T+K  +E +L  ++   + V++V
Sbjct:  116 AAEISEAQIRKPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDFVKVTLKGACGSCASSTATLKDAVEAKLRLRVLPTLVVQAV 205          
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NFU1_DROGR (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila grimshawi GN=GH17809 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  433 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE 657
            T   I+ +LD  IRP +  DGG++     +  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE
Sbjct:  190 TVMMIKELLDTRIRPTVQEDGGDIVFISYEKGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDE 265          
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NFU1_DROPS (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=GA22888 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  433 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE 657
            T   I+ +LD  IRP +  DGG++     +  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V D+
Sbjct:  178 TVMMIKELLDTRIRPTVQEDGGDIVFISYENGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDD 253          
BLAST of FC868835 vs. ExPASy Swiss-Prot
Match: NFU1_DROPE (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila persimilis GN=GL13432 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  433 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE 657
            T   I+ +LD  IRP +  DGG++     +  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V D+
Sbjct:  174 TVMMIKELLDTRIRPTVQEDGGDIVFISYENGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDD 249          
The following BLAST results are available for this feature:
BLAST of FC868835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
NFU1_MOUSE7.194e-1247.95NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_HUMAN1.227e-1147.30NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROYA1.603e-1144.74NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROSI1.603e-1144.74NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROSE1.603e-1144.74NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROER1.603e-1144.74NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NIFU_PLEBO2.093e-1141.11Nitrogen fixation protein nifU (Fragment) OS=Plect... [more]
NFU1_DROGR2.093e-1144.74NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROPS2.734e-1143.42NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROPE2.734e-1143.42NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]

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Properties
Property NameValue
Genbank descriptionC31005D06EF AbioticL1 Citrus clementina cDNA clone C31005D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868835 ID=FC868835; Name=FC868835; organism=Citrus clementina; type=EST; length=679bp
GGCGCAAAAAAAAAAAAAAAAGACAACAAAGACTGCGCCAACCGCCCGCG
ACCCCGCGTAACGAAAGCAAAATAAAACAGAAACACAGATCGATTCAATT
AATCGTTAAACCATCAATTTTTATCAAATCGAATCCCCTGAAAGGAAAAA
AAAAAAGTATACACCCGAAGAAATACAAAGAGAAAGATGCAAGGCGTTGT
GTTGAACCCAACTTACAGTCGCCCTCACCAAACCCTAGACTCTCCTTCTT
GTTCTCGTCCTGCCTCTAAGAGTACTAAAAGTTTCTTTGGAGAACGAGTT
TCGCTTACGAGGTGGCGGAATCCGGTGCGTCACAGCTCGTGTCGGTTACT
GCTGATTCGGAAGCGTGGGGCCGCGCGAAGGAACGTCATAAAGGCTGTGG
CTACTCCTGATTCAGCTATTGAGTTACCTTTAACTGCTGAGAATATTGAA
AGTGTATTGGATGAAATTCGACCATATCTTATATCAGATGGGGGAAATGT
GGCATTACATGAGATTGATGGCAATGTTGTACGATTGAAGCTACAGGGAG
CATGTGGGTCTTGTCCCAGTTCTGTTATGACGATGAAGATGGGTATTGAG
CGTCGCTTAATGGAGAAGATCCCCGAGATAGTTGCAGTGGAATCGGTAGC
AGATGAAGAAACTGGGCTTGAGCTGAATG
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