FC868845

Overview
NameFC868845
Unique NameFC868845
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868845_ssr5 microsatellite FC868845_ssr5:5..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13930 contig Ccv1_Contig13930:12..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.608e-38
Identity = 85/178 (47.75%), Postives = 110/178 (61.80%), Query Frame = 2
Query:  149 VPFDEGYSHLFGHDNLVVHRDGKSVHLSLDE-TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWAT 676
            VPF   Y   +  D+      G  + L LD+ TG+GF S   YL G FS  IKLPA  TAGVV AFY+S+ +     HDEIDFEFLGN  G+   +QTN++  G  +  RE+R  LWFDPS  +H YS+LW   QI+F++D IPIR FK    +G  FP  +PM LY+++W+  DWAT
Sbjct:   32 VPFGRNYVPTWAFDHQKQLNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTN---NEHDEIDFEFLGNRTGQPVILQTNVFTGGKGN--REQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWAT 204          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.050e-37
Identity = 80/178 (44.94%), Postives = 111/178 (62.36%), Query Frame = 2
Query:  149 VPFDEGYSHLFGHDNLVVHRDGKSVHLSLDET-GSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWAT 676
            VPFD+ Y   +  D++     G+ V LSLD+T G+GF +   YL G FS  IKL    +AG V AFY+S+ +     HDEIDFEFLGN  G+ + +QTN++  G     RE+R  LWFDP+ D+H YS+LW    I F++D  PIR FK +  +G  +P  +PM LY+++W+  DWAT
Sbjct:   30 VPFDKNYVPTWAQDHIHYVNGGREVQLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYLSSQN---SEHDEIDFEFLGNRTGQPYILQTNVFSGGKGD--REQRIYLWFDPTKDYHSYSVLWNLYMIAFFVDDTPIRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWAT 202          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.371e-37
Identity = 83/179 (46.37%), Postives = 114/179 (63.69%), Query Frame = 2
Query:  155 FDEGYSHLFGHDNLVVHRDGKSVHLSLDET-GSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTS---IGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREF-KRTASMGGDFPAKPMSLYATIWDGSDWAT 676
            F +G+ +L+G  +     D  ++ + LD T GSGF S   +  G+F A+IKL   YTAGV+ + Y+SN +     HDE+D EFLG   GK + +QTN+Y  GS     IGRE ++ LWFDP+ DFH Y+ILW+  +IIF +D IPIR + K++AS    FP +PM LY +IWD S WAT
Sbjct:   43 FYKGFRNLWGPQHQ--RMDQNALTIWLDRTSGSGFKSVKPFRSGYFGANIKLQPGYTAGVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRYPKKSAS---TFPLRPMWLYGSIWDASSWAT 216          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH8_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.804e-37
Identity = 77/182 (42.31%), Postives = 119/182 (65.38%), Query Frame = 2
Query:  143 PIVPFDEGYSHLFGHDNLVVHRDGKSVHLSLD-ETGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGD--FP-AKPMSLYATIWDGSDWAT 676
            P   F++ ++ ++  ++     DG+  +LSLD +TG GF +  +Y  G+FS  +KL    +AGVV A+YM + +      DEIDFEFLGN  G+ + IQTN+Y NG+ +  RE R++LWFDP+ D+H YSILW + Q++F++D +PIR +K +  +  +  FP  KPM L+++IW+  DWAT
Sbjct:   21 PTQSFEDNFNIMWSENHFTTSDDGEIWNLSLDNDTGCGFQTKHMYRFGWFSMKLKLVGGDSAGVVTAYYMCSENGAGPERDEIDFEFLGNRTGQPYIIQTNVYKNGTGN--REMRHSLWFDPTKDYHTYSILWNNHQLVFFVDRVPIRVYKNSDKVPNNDFFPNQKPMYLFSSIWNADDWAT 200          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.586e-36
Identity = 79/178 (44.38%), Postives = 108/178 (60.67%), Query Frame = 2
Query:  149 VPFDEGYSHLFGHDNLVVHRDGKSVHLSLDE-TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWAT 676
            VPF   Y   +  D++     G  + L LD+ TG+GF S   YL G FS  IKL    +AG V AFY+S+ +     HDEIDFEFLGN  G+ + +QTN++  G     RE+R  LWFDP+  +H+YS+LW   QI+FY+D  PIR FK +  +G  FP  +PM +Y ++W+  DWAT
Sbjct:   29 VPFGRNYVPTWAFDHIKYLNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKLVPGDSAGTVTAFYLSSTNA---EHDEIDFEFLGNRTGQPYILQTNVFTGGKGD--REQRIYLWFDPTTQYHRYSVLWNMYQIVFYVDDYPIRVFKNSNDLGVKFPFNQPMKIYNSLWNADDWAT 201          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.586e-36
Identity = 77/177 (43.50%), Postives = 109/177 (61.58%), Query Frame = 2
Query:  149 VPFDEGYSHLFGHDNLVVHRDGKSVHLSLDET-GSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWAT 676
            V F + Y   +G  ++     G+ V L +D++ G GF S D Y  G F   IK+P+  T G+V AFY+++       HDEIDFEFLGN  GK   +QTN++ NG  +  REER+ LWF+P+  +H Y +LW   QI+FY+D IPIR +K     G  +P+KPM + A++W+G DWAT
Sbjct:   33 VTFGQNYIVTWGQSHVSTLHSGEEVDLYMDQSSGGGFESKDAYGSGLFEMRIKVPSGNTGGIVTAFYLTSKG---GGHDEIDFEFLGNNNGKPVTLQTNLFLNGEGN--REERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIRVYKN--ENGVSYPSKPMQVEASLWNGDDWAT 202          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36
Identity = 79/185 (42.70%), Postives = 112/185 (60.54%), Query Frame = 2
Query:  131 YRNLPI-VPFDEGYSHLFGHDNLVVHRDGKSVHLSLDET-GSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWAT 676
            Y   P+ VPF + Y   +   ++     G +V L LD + G+GF S   YL G FS  +KL    +AGVV AFY+S+ +     HDEIDFEFLGN  G+ + +QTN++  G     RE+R  LWFDP+  +H YS+LW   QI+ ++D +PIR FK +  +G  FP  +PM +Y+++WD  DWAT
Sbjct:   23 YPRKPVDVPFWKNYEPSWASHHIKYLSGGSTVDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYLSSNNA---EHDEIDFEFLGNRTGQPYILQTNVFTGGKGD--REQRIYLWFDPTKGYHSYSVLWNTFQIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWAT 202          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36
Identity = 77/176 (43.75%), Postives = 110/176 (62.50%), Query Frame = 2
Query:  155 FDEGYSHLFGHDNLVVHRDGKSVHLSLDE-TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWAT 676
            F E +   +   ++    DGK++ L LD+ TG GF S   YL G  S  IKL    +AG V AFYM++     +  DE+DFEFLGN  G+ + +QTNI+ +G     RE+R NLWFDPS D+H Y+ILW+   I+FY+D +PIRE+K   +    +P ++PM +Y+T+W+  DWAT
Sbjct:   35 FVEDFKAAWSESHIRQMEDGKAIQLVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTATVR--DELDFEFLGNRSGQPYSVQTNIFAHGKGD--REQRVNLWFDPSMDYHTYTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWAT 206          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.283e-35
Identity = 77/178 (43.26%), Postives = 109/178 (61.24%), Query Frame = 2
Query:  149 VPFDEGYSHLFGHDNLVVHRDGKSVHLSLDE-TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWAT 676
            V F   Y   +  D++     G  + L LD+ TG+GF S   YL G FS  IK+    +AG V AFY+S+ +     HDEIDFEFLGN  G+ + +QTN++  G     RE+R  LWFDP+ ++H+YSILW   QI+F++D +PIR FK +  +G  FP  +PM +Y ++W+  DWAT
Sbjct:   31 VQFGRNYVPTWAFDHIKYFNGGSDIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNA---EHDEIDFEFLGNRTGQPYILQTNVFTGGKGD--REQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWAT 203          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.318e-35
Identity = 77/164 (46.95%), Postives = 106/164 (64.63%), Query Frame = 2
Query:  197 VVHRDGKS--VHLSLDET-GSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWAT 676
            VV  DGK+  V L+LD + GSGF S D YL G FS  +KL    +AG V +FY+S+G+     HDEID EF+GN+ G  + + TN++ NG     +E ++ LWFDP+ DFH Y I+W    IIF +D +P+R FK+   +   +P +KPM L+AT+WDGS WAT
Sbjct:   43 VVSDDGKTQQVALTLDRSSGSGFTSKDTYLFGEFSVQMKLVGGNSAGTVTSFYLSSGE--GDGHDEIDIEFMGNLSGNPYVMNTNVWANGDGK--KEHQFYLWFDPTADFHTYKIIWNPQNIIFQVDDVPVRTFKKYDDLA--YPQSKPMRLHATLWDGSYWAT 200          
The following BLAST results are available for this feature:
BLAST of FC868845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH_BRAOB3.608e-3847.75Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH_WHEAT1.050e-3744.94Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH1.371e-3746.37Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ARATH6.804e-3742.31Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN2.586e-3644.38Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH3_ARATH2.586e-3643.50Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_TOBAC4.411e-3642.70Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH6_ARATH4.411e-3643.75Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_SOYBN1.283e-3543.26Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ORYSJ8.318e-3546.95Xyloglucan endotransglycosylase/hydrolase protein ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31005E08EF AbioticL1 Citrus clementina cDNA clone C31005E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868845 ID=FC868845; Name=FC868845; organism=Citrus clementina; type=EST; length=698bp
GCACATATATATATAAACATACACTCACAGAGACAGAGCAAAAACAGAGA
GAGAAGAAAAGATGGTGGTGTCTTATGAGGGTTGTTTTCTTCTAGTATTT
TCTCTTCTTGCTGTGGTTGCTTCTGGGTTGTACAGAAACCTGCCTATTGT
GCCTTTTGATGAAGGGTATAGTCATTTGTTTGGGCATGATAATCTTGTTG
TTCATAGAGATGGAAAATCTGTTCATTTATCTCTAGATGAAACAGGGTCT
GGATTTGTGTCACATGACCTCTATCTTCATGGTTTCTTCAGTGCTTCAAT
AAAGTTGCCTGCTGATTATACTGCCGGCGTTGTTGTTGCCTTCTATATGT
CAAATGGTGACATGTTTGAGAAGAATCATGATGAAATAGACTTTGAGTTC
TTGGGTAATATTAGAGGCAAAAATTGGAGGATTCAGACTAATATTTATGG
CAATGGAAGCACCAGCATTGGAAGAGAAGAGAGATACAATCTCTGGTTTG
ATCCTTCTGATGATTTCCATCAGTACAGTATTCTCTGGACTGATTCCCAG
ATCATATTTTATATAGACGGTATTCCAATTAGGGAGTTTAAGAGAACTGC
ATCTATGGGAGGAGATTTTCCTGCTAAGCCGATGTCTTTGTACGCCACAA
TCTGGGATGGCTCTGATTGGGCTACAATGGTGGNCAATACCGAGTGAA
back to top