FC868845

Overview
NameFC868845
Unique NameFC868845
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868845_ssr5 microsatellite FC868845_ssr5:5..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13930 contig Ccv1_Contig13930:12..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.385e-28
Identity = 66/176 (37.50%), Postives = 106/176 (60.23%), Query Frame = 2
Query:  155 FDEGYSHLFGHDNLVVHRDGKSVHLSLDET-GSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKP-MSLYATIWDGSDWAT 676
            F + +   +G D++ ++  G ++ L LD++ GS   S   +L G     IKL    +AG V A+Y+S+       HDEIDFEFLGN  G+ + I TN+Y  G  +  RE+++  WF+P++ FH Y+I W  S++++++DG PIR F+   S G  +P K  M ++A++W+  DWAT
Sbjct:   29 FSKNFIVTWGKDHMFMN--GTNLRLVLDKSAGSAIKSKVAHLFGSVEMLIKLVPGNSAGTVAAYYLSSTG---STHDEIDFEFLGNATGQPYTIHTNLYAQGKGN--REQQFRPWFNPTNGFHNYTIHWNPSEVVWFVDGTPIRVFRNYESEGIAYPNKQGMKVFASLWNAEDWAT 197          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 60/174 (34.48%), Postives = 102/174 (58.62%), Query Frame = 2
Query:  149 VPFDEGYSHLFGHDNLVVHRDGKSVHLSLDE-TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPA-KPMSLYATIWDGS 664
            V +   Y   +GH  LV+++  + + L+LD+ +GSGF S  +Y  G+F+  IK P   + GV+ +FY+ +       HDE+ F+ LG   G  + + TN+Y  G    G+++R+ LWFDP+ D+H YS LW  +Q++FY+D  PIR + +   +   +P+ + M L  ++ +GS
Sbjct:   22 VTWGNNYYQTWGHQALVINKTSE-LQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRS---SRHDELCFQILGK-NGPPYLLNTNMYLYGEG--GKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDV--YYPSVQTMFLMGSVQNGS 186          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: CRH1_YEAST (Probable glycosidase CRH1 OS=Saccharomyces cerevisiae GN=CRH1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 46/153 (30.07%), Postives = 74/153 (48.37%), Query Frame = 2
Query:  209 DGKSVHLSLDETGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSD 667
            DG S+ L+         S+   ++G     +K  A    G+V +FY+ + D+     DEID E++G   G N + Q+N +  G T+      ++    P+D FH Y++ W   +  +Y+DG  +R    T+S G  +P  PM L   IW G D
Sbjct:   83 DGLSMTLAKRYDNPSLKSNFYIMYGKLEVILK--AANGTGIVSSFYLQSDDL-----DEIDIEWVG---GDNTQFQSNFFSKGDTTTYDRGEFHGVDTPTDKFHNYTLDWAMDKTTWYLDGESVRVLSNTSSEG--YPQSPMYLMMGIWAGGD 223          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: GUB_PAEMA (Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 57/172 (33.14%), Postives = 81/172 (47.09%), Query Frame = 2
Query:  188 DNLVVHRDGKSVHLSLDETGSGFVSHD--------LYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGS---DW 670
            +N+    DGK   L L  T S +   D        +Y +G +  S+K PA  T G+V +F+   G       DEID EFLG    K   +Q N Y NG    G E+  +L FD S  FH Y+  W    I +Y+DG+     K TA+   + P+ P  +   +W+G+   DW
Sbjct:   60 NNVNFTNDGK---LKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTAT--ANIPSTPGKIMMNLWNGTGVDDW 215          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: GUB_PAEPO (Beta-glucanase OS=Paenibacillus polymyxa GN=gluB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 55/165 (33.33%), Postives = 80/165 (48.48%), Query Frame = 2
Query:  188 DNLVVHRDGKSVHLSLDETGSG------FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGS 664
            +N+    DGK + LSL    +       + S + Y +G +  S+K PA  T G+V +F+   G       DEID EFLG    K   +Q N Y NG    G E+  NL FD S  FH Y+  W    I +Y+DG+     K TA+   + P+ P  +   +W+G+
Sbjct:   61 NNVNFTNDGK-LKLSLTSPANNKFDCGEYRSTNNYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPSHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVG--GHEKIINLGFDASTSFHTYAFDWQPGYIKWYVDGV----LKHTATT--NIPSTPGKIMMNLWNGT 211          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XYND_RUMFL (Xylanase/beta-glucanase OS=Ruminococcus flavefaciens GN=xynD PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 46/146 (31.51%), Postives = 68/146 (46.58%), Query Frame = 2
Query:  242 TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDG---SDW 670
            +G  F +++ Y +G++  S++  A    GVV +F+   G   +   DEID E LG       ++Q N Y NG      E+ Y+L FD S+ +H Y   W  + I +Y+DG   RE  R      D P  P  +    W G    DW
Sbjct:  635 SGGEFRTNNFYHYGYYECSMQ--AMKNDGVVSSFFTYTGPSDDNPWDEIDIEILGK---NTTQVQFNYYTNGQGK--HEKLYDLGFDSSEAYHTYGFDWQPNYIAWYVDG---REVYRATQ---DIPKTPGKIMMNAWPGLTVDDW 767          
The following BLAST results are available for this feature:
BLAST of FC868845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH26_ARATH3.385e-2837.50Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH1.922e-2334.48Probable xyloglucan endotransglucosylase/hydrolase... [more]
CRH1_YEAST3.401e-1230.07Probable glycosidase CRH1 OS=Saccharomyces cerevis... [more]
GUB_PAEMA7.576e-1233.14Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2[more]
GUB_PAEPO1.688e-1133.33Beta-glucanase OS=Paenibacillus polymyxa GN=gluB P... [more]
XYND_RUMFL4.910e-1131.51Xylanase/beta-glucanase OS=Ruminococcus flavefacie... [more]

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Properties
Property NameValue
Genbank descriptionC31005E08EF AbioticL1 Citrus clementina cDNA clone C31005E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868845 ID=FC868845; Name=FC868845; organism=Citrus clementina; type=EST; length=698bp
GCACATATATATATAAACATACACTCACAGAGACAGAGCAAAAACAGAGA
GAGAAGAAAAGATGGTGGTGTCTTATGAGGGTTGTTTTCTTCTAGTATTT
TCTCTTCTTGCTGTGGTTGCTTCTGGGTTGTACAGAAACCTGCCTATTGT
GCCTTTTGATGAAGGGTATAGTCATTTGTTTGGGCATGATAATCTTGTTG
TTCATAGAGATGGAAAATCTGTTCATTTATCTCTAGATGAAACAGGGTCT
GGATTTGTGTCACATGACCTCTATCTTCATGGTTTCTTCAGTGCTTCAAT
AAAGTTGCCTGCTGATTATACTGCCGGCGTTGTTGTTGCCTTCTATATGT
CAAATGGTGACATGTTTGAGAAGAATCATGATGAAATAGACTTTGAGTTC
TTGGGTAATATTAGAGGCAAAAATTGGAGGATTCAGACTAATATTTATGG
CAATGGAAGCACCAGCATTGGAAGAGAAGAGAGATACAATCTCTGGTTTG
ATCCTTCTGATGATTTCCATCAGTACAGTATTCTCTGGACTGATTCCCAG
ATCATATTTTATATAGACGGTATTCCAATTAGGGAGTTTAAGAGAACTGC
ATCTATGGGAGGAGATTTTCCTGCTAAGCCGATGTCTTTGTACGCCACAA
TCTGGGATGGCTCTGATTGGGCTACAATGGTGGNCAATACCGAGTGAA
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