FC868847

Overview
NameFC868847
Unique NameFC868847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3511 contig Ccv1_Contig3511:142..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDH_SALHS (Malate dehydrogenase OS=Salmonella heidelberg (strain SL476) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.285e-28
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  211 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
[Close]
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDH_SALG2 (Malate dehydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.285e-28
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  211 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
[Close]
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDH_SALEP (Malate dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.285e-28
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  211 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
[Close]
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDH_SALCH (Malate dehydrogenase OS=Salmonella choleraesuis GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.285e-28
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  211 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
[Close]
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDH_SALAR (Malate dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.285e-28
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  211 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
[Close]
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDH_SALA4 (Malate dehydrogenase OS=Salmonella agona (strain SL483) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.285e-28
Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  211 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117
[Close]
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDH_KLEP7 (Malate dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.285e-28
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = 1 
Query:  211 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T+  ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CP+A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPQACIGII 117
[Close]
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDH_ECOUT (Malate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=mdh PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 6.285e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  211 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDH_ECOSM (Malate dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.285e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  211 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDH_ECOLI (Malate dehydrogenase OS=Escherichia coli (strain K12) GN=mdh PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.285e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  211 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
The following BLAST results are available for this feature:
BLAST of FC868847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
MDH_SALHS6.285e-2858.97Malate dehydrogenase OS=Salmonella heidelberg (str... [more]
MDH_SALG26.285e-2858.97Malate dehydrogenase OS=Salmonella gallinarum (str... [more]
MDH_SALEP6.285e-2858.97Malate dehydrogenase OS=Salmonella enteritidis PT4... [more]
MDH_SALCH6.285e-2858.97Malate dehydrogenase OS=Salmonella choleraesuis GN... [more]
MDH_SALAR6.285e-2858.97Malate dehydrogenase OS=Salmonella arizonae (strai... [more]
MDH_SALA46.285e-2858.97Malate dehydrogenase OS=Salmonella agona (strain S... [more]
MDH_KLEP76.285e-2857.26Malate dehydrogenase OS=Klebsiella pneumoniae subs... [more]
MDH_ECOUT6.285e-2857.26Malate dehydrogenase OS=Escherichia coli (strain U... [more]
MDH_ECOSM6.285e-2857.26Malate dehydrogenase OS=Escherichia coli (strain S... [more]
MDH_ECOLI6.285e-2857.26Malate dehydrogenase OS=Escherichia coli (strain K... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31005E10EF AbioticL1 Citrus clementina cDNA clone C31005E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868847 ID=FC868847; Name=FC868847; organism=Citrus clementina; type=EST; length=556bp
GACCGCATCAATTTCATTTTCTGCGAATTGTTTGTTTTATCACAACTAAG
TCTCCAGAAACTCAGAACCATGCAGCAGCCAACTTCAGGAGCAAATCAAC
GCATTGCGAGAATCGCTGCTCATCTCCATCCACCAACTCTCCAGATAGAG
GGAGAGAGTTCGGGTTTGGGGCGGATGGATTGCAGGGCAAAAGGCGGGTC
GCCCGGATTCAAGGTGGCTGTATTGGGAGCTGCTGGAGGGATTGGACAGC
CTCTGGCTATGTTGATGAAGATCAATCCCTTGGTTTCAGTTCTTCATCTT
TATGATGTTGTCAATACTCCTGGGGTTACTGCCGATATCAGTCACATGGA
TACAAATGCTGTGGTACGAGGATTTTTGGGGCAACAGCAATTGGAGGATG
CCCTCACGGGCATGGACATTGTAATCATTCCCGCTGGTGTTCCTAGGAAA
CCTGGAATGACTAGGGATGATCTGTTCAATATCAATGCCGGAATTGTTAA
GACCCTTTGTGAAGGAATAGCTAAGTGCTGTCCAAAAGCTATTGTGAACT
TGATTA
back to top