FC868847

Overview
NameFC868847
Unique NameFC868847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3511 contig Ccv1_Contig3511:142..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDH_SHIF8 (Malate dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.072e-27
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  211 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKNCPKACIGII 117          
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDH_SHESH (Malate dehydrogenase OS=Shewanella sediminis (strain HAW-EB3) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.072e-27
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  211 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E  A  CPKA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLVEKCAAACPKALIGII 117          
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDH_AERS4 (Malate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.072e-27
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  211 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T+  V+GF G+     AL G D+V+I AGV RKPGM R DLFNIN GIVK L E  A  CPKA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNRLPAGSELSLYDIAPVTPGVAVDLSHIPTDVKVKGFCGEDP-SPALVGADVVLISAGVARKPGMDRSDLFNINPGIVKNLVEKCAASCPKALIGII 117          
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDH_SHEPA (Malate dehydrogenase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.400e-27
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  211 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E  A  CPKA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAGEDPTA-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLVEKCAATCPKALIGII 117          
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDH_SHELP (Malate dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.400e-27
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  211 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E  A  CPKA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLVEKCAATCPKALIGII 117          
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDH_SALDC (Malate dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.400e-27
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  211 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV R+PGM R DLFN+NAGIVK L + IAK CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARRPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117          
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDH_PROMH (Malate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.400e-27
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  211 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   V+GF G+     AL   D+V+I AGV RKPGM R DLFN+NAGIV+ L E +A+ CPKA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPAGSELSLYDIAPVTPGVAADLSHIPTQVRVKGFAGEDP-SPALKDADVVLISAGVARKPGMDRSDLFNVNAGIVRNLIEKVAQNCPKALIGII 117          
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDH_ECOSE (Malate dehydrogenase OS=Escherichia coli (strain SE11) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.400e-27
Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  211 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + ++K CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVSKTCPKACIGII 117          
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDH_ALISL (Malate dehydrogenase OS=Aliivibrio salmonicida (strain LFI1238) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.400e-27
Identity = 68/117 (58.12%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  211 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVAV+GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+     AL G D+V+I AGV RKPGM R DLFNINAGIVK+L E IA  CPKA + +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYCGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVKSLAEKIAVTCPKACIGII 117          
BLAST of FC868847 vs. ExPASy Swiss-Prot
Match: MDHP_YEAST (Malate dehydrogenase, peroxisomal OS=Saccharomyces cerevisiae GN=MDH3 PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 1.400e-27
Identity = 58/115 (50.43%), Postives = 85/115 (73.91%), Query Frame = 1
Query:  211 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 555
            KVA+LGA+GG+GQPL++L+K++P VS L LYD+    G+  D+SH++TN+   G+  +  +E+ L+   +V+IPAGVPRKPG+TRDDLF +NAGIVK+L   + K  P A + +I
Sbjct:    3 KVAILGASGGVGQPLSLLLKLSPYVSELALYDIRAAEGIGKDLSHINTNSSCVGY-DKDSIENTLSNAQVVLIPAGVPRKPGLTRDDLFKMNAGIVKSLVTAVGKFAPNARILVI 116          
The following BLAST results are available for this feature:
BLAST of FC868847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
MDH_SHIF81.072e-2757.26Malate dehydrogenase OS=Shigella flexneri serotype... [more]
MDH_SHESH1.072e-2758.12Malate dehydrogenase OS=Shewanella sediminis (stra... [more]
MDH_AERS41.072e-2758.12Malate dehydrogenase OS=Aeromonas salmonicida (str... [more]
MDH_SHEPA1.400e-2758.12Malate dehydrogenase OS=Shewanella pealeana (strai... [more]
MDH_SHELP1.400e-2758.12Malate dehydrogenase OS=Shewanella loihica (strain... [more]
MDH_SALDC1.400e-2758.12Malate dehydrogenase OS=Salmonella dublin (strain ... [more]
MDH_PROMH1.400e-2757.26Malate dehydrogenase OS=Proteus mirabilis (strain ... [more]
MDH_ECOSE1.400e-2756.41Malate dehydrogenase OS=Escherichia coli (strain S... [more]
MDH_ALISL1.400e-2758.12Malate dehydrogenase OS=Aliivibrio salmonicida (st... [more]
MDHP_YEAST1.400e-2750.43Malate dehydrogenase, peroxisomal OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC31005E10EF AbioticL1 Citrus clementina cDNA clone C31005E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868847 ID=FC868847; Name=FC868847; organism=Citrus clementina; type=EST; length=556bp
GACCGCATCAATTTCATTTTCTGCGAATTGTTTGTTTTATCACAACTAAG
TCTCCAGAAACTCAGAACCATGCAGCAGCCAACTTCAGGAGCAAATCAAC
GCATTGCGAGAATCGCTGCTCATCTCCATCCACCAACTCTCCAGATAGAG
GGAGAGAGTTCGGGTTTGGGGCGGATGGATTGCAGGGCAAAAGGCGGGTC
GCCCGGATTCAAGGTGGCTGTATTGGGAGCTGCTGGAGGGATTGGACAGC
CTCTGGCTATGTTGATGAAGATCAATCCCTTGGTTTCAGTTCTTCATCTT
TATGATGTTGTCAATACTCCTGGGGTTACTGCCGATATCAGTCACATGGA
TACAAATGCTGTGGTACGAGGATTTTTGGGGCAACAGCAATTGGAGGATG
CCCTCACGGGCATGGACATTGTAATCATTCCCGCTGGTGTTCCTAGGAAA
CCTGGAATGACTAGGGATGATCTGTTCAATATCAATGCCGGAATTGTTAA
GACCCTTTGTGAAGGAATAGCTAAGTGCTGTCCAAAAGCTATTGTGAACT
TGATTA
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