FC868853

Overview
NameFC868853
Unique NameFC868853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9411 contig Ccv1_Contig9411:77..516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.607e-20
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            I+V KN+RVC D H+A ++++ I  R II+RD NRFHHF+ G+CSC DYW
Sbjct:  732 IRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781          

HSP 2 Score: 46.9802 bits (110), Expect = 6.607e-20
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = -3
Query:  274 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNL 435
            E++  +E + + +K AG +   S  LHDVE E++E M+ Y SE L V +GIM +
Sbjct:  673 EIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRV 726          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.623e-20
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            I++TKN+R+C D H A + IS I  R+II+RD NRFH F  G CSC DYW
Sbjct:  637 IRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686          

HSP 2 Score: 48.521 bits (114), Expect = 6.623e-20
Identity = 22/53 (41.51%), Postives = 35/53 (66.04%), Query Frame = -3
Query:  277 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMN 435
            E+Y++++ +  ++K  G +PD   ALHDVE ED+E  +   SE L +VF +MN
Sbjct:  573 EIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMN 625          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.123e-19
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = -1
Query:  108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            P   I+V KN+RVC D H+A + IS I+ RK+++RD  RFHHFE G CSC D+W
Sbjct:  550 PGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603          

HSP 2 Score: 41.5874 bits (96), Expect = 1.123e-19
Identity = 17/57 (29.82%), Postives = 38/57 (66.67%), Query Frame = -3
Query:  268 EVYKKVESMSVEIKMAGCMPDLSCALH-DVEVEDRELMMYYPSENLDVVFGIMNLIP 435
            ++++ ++ M  E+K++G +PD S  +H ++  +++E+ + Y SE L + FG++N  P
Sbjct:  494 KLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPP 550          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.461e-19
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = -1
Query:  108 ILSPEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 278
            +  P   I+VTKN+R C D H+  +F+S +Y R +IVRD +RFHHF+GG+CSCND+W
Sbjct:  535 VTPPGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591          

HSP 2 Score: 38.891 bits (89), Expect = 1.461e-19
Identity = 17/54 (31.48%), Postives = 36/54 (66.67%), Query Frame = -3
Query:  280 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRE-LMMYYPSENLDVVFGIM 438
            +E+YK +  ++ ++K+AG + +++  LH++E E+ +   + Y SE L + FGI+
Sbjct:  481 EEIYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGIL 534          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.893e-19
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = -1
Query:  108 VIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 260
            VI++ KN+RVC D H  F+ +S +Y R+IIVRD  RFH ++ G CSC DYW
Sbjct:  672 VIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722          

HSP 2 Score: 45.8246 bits (107), Expect = 1.893e-19
Identity = 20/53 (37.74%), Postives = 36/53 (67.92%), Query Frame = -3
Query:  277 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMN 435
            E+Y K++ +  ++K+AG +PD    L DVE E+++ ++ + SE L + FG+MN
Sbjct:  608 EIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMN 660          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.455e-19
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = -1
Query:  108 EAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 266
            +  I++ KN+RVC D HS  +FIS I  R+IIVRD+NRFHHF+ G CSC DYW
Sbjct:  771 KTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823          

HSP 2 Score: 38.891 bits (89), Expect = 2.455e-19
Identity = 16/53 (30.19%), Postives = 34/53 (64.15%), Query Frame = -3
Query:  280 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIM 438
            +E+Y+++ ++  ++KM G +PD    L DVE +++E ++   SE L + F ++
Sbjct:  714 EEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALI 766          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.467e-19
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = -1
Query:  108 SPEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 272
            SP   I++ KN+R+C D HS+ + IS +Y+RKI VRD  RFHHF+ G+CSC DYW
Sbjct:  592 SPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646          

HSP 2 Score: 37.7354 bits (86), Expect = 2.467e-19
Identity = 20/57 (35.09%), Postives = 35/57 (61.40%), Query Frame = -3
Query:  268 KKVESMSVEI----KMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 426
            K++ SM VEI    ++AG  P  +  L ++E ED+E +++Y SE +   FG+++  P
Sbjct:  537 KEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSP 593          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PPR74_ARATH (Pentatricopeptide repeat-containing protein At1g47580, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H50 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.524e-19
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = -1
Query:  108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            P   I+V KN+R+C D H+  + +S I  R+IIVRD  RFHHF  G CSC DYW
Sbjct:  186 PGTTIRVMKNLRICGDCHNFIKILSSIEDREIIVRDNKRFHHFRDGNCSCGDYW 239          

HSP 2 Score: 46.2098 bits (108), Expect = 2.524e-19
Identity = 20/56 (35.71%), Postives = 35/56 (62.50%), Query Frame = -3
Query:  268 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 435
            + Y K++S+  E++ AG +P+    LHD++ E +E  + + SE L + FGI+N  P
Sbjct:  131 KAYVKLKSLGKEVRDAGYVPETKYVLHDIDEEAKEKALMHHSERLAIAFGIINTPP 186          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.214e-19
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            I+V KN+RVC D H+A +F+S   RR IIVRD NRFH FE G CSCNDYW
Sbjct:  539 IRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588          

HSP 2 Score: 40.0466 bits (92), Expect = 3.214e-19
Identity = 17/53 (32.08%), Postives = 33/53 (62.26%), Query Frame = -3
Query:  280 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIM 438
            KE+Y+K+  +  E++ AG + D S  L +V+ +++   + Y SE L + FG++
Sbjct:  479 KEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLI 531          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.160e-19
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = -1
Query:  108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            P   + + KN+RVC + H A + IS IY+R+II RD  RFHHF  G CSCNDYW
Sbjct:  688 PGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741          

HSP 2 Score: 41.2022 bits (95), Expect = 4.160e-19
Identity = 20/57 (35.09%), Postives = 35/57 (61.40%), Query Frame = -3
Query:  268 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 438
            +E+Y  +E M V ++ AG +PD S  L ++E E +E  + + SE L + FG+++  P
Sbjct:  632 REIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKP 688          
The following BLAST results are available for this feature:
BLAST of FC868853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
PP301_ARATH6.607e-2058.00Pentatricopeptide repeat-containing protein At4g02... [more]
PP271_ARATH6.623e-2058.00Putative pentatricopeptide repeat-containing prote... [more]
PP145_ARATH1.123e-1955.56Pentatricopeptide repeat-containing protein At2g02... [more]
PP267_ARATH1.461e-1954.39Pentatricopeptide repeat-containing protein At3g47... [more]
PP311_ARATH1.893e-1954.90Pentatricopeptide repeat-containing protein At4g14... [more]
PP348_ARATH2.455e-1960.38Pentatricopeptide repeat-containing protein At4g33... [more]
PP425_ARATH2.467e-1956.36Pentatricopeptide repeat-containing protein At5g48... [more]
PPR74_ARATH2.524e-1953.70Pentatricopeptide repeat-containing protein At1g47... [more]
PP429_ARATH3.214e-1966.00Putative pentatricopeptide repeat-containing prote... [more]
PPR21_ARATH4.160e-1955.56Pentatricopeptide repeat-containing protein At1g08... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31005F06EF AbioticL1 Citrus clementina cDNA clone C31005F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868853 ID=FC868853; Name=FC868853; organism=Citrus clementina; type=EST; length=440bp
CTGTTCTCTATGGGAATGCCACAATTGGGCTAAAATGATTAGGATGAATT
CGTACAATGCTTGGCTTTGAGGTTCTAGTTATGTACGGGCTTACCTGGGA
TAGCTTACCAATAATCGTTGCATGAGCAAGTGCCACCTTCAAAATGATGG
AACCGATTTGCATCTCTAACAATGATCTTCCTTCGATAAATATATGAGAT
AAACCTGAATGCTGAGTGGTAATCATTGCAAACACGAACATTTTTTGTTA
CTTGAATTACTGCTTCTGGGGATAAGATTCATAATTCCAAAAACCACATC
CAGGTTCTCACTGGGGTAATACATCATGAGTTCCCTGTCTTCGACTTCCA
CATCATGTAGAGCGCATGATAGGTCCGGCATGCATCCTGCCATCTTTATC
TCAACTGACATGCTCTCTACTTTCTTGTAAACTTCTTTCC
back to top