FC868853
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.607e-20 Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = -1 Query: 108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257 I+V KN+RVC D H+A ++++ I R II+RD NRFHHF+ G+CSC DYW Sbjct: 732 IRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781 HSP 2 Score: 46.9802 bits (110), Expect = 6.607e-20 Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = -3 Query: 274 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNL 435 E++ +E + + +K AG + S LHDVE E++E M+ Y SE L V +GIM + Sbjct: 673 EIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRV 726
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 6.623e-20 Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = -1 Query: 108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257 I++TKN+R+C D H A + IS I R+II+RD NRFH F G CSC DYW Sbjct: 637 IRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686 HSP 2 Score: 48.521 bits (114), Expect = 6.623e-20 Identity = 22/53 (41.51%), Postives = 35/53 (66.04%), Query Frame = -3 Query: 277 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMN 435 E+Y++++ + ++K G +PD ALHDVE ED+E + SE L +VF +MN Sbjct: 573 EIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMN 625
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 1.123e-19 Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = -1 Query: 108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269 P I+V KN+RVC D H+A + IS I+ RK+++RD RFHHFE G CSC D+W Sbjct: 550 PGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603 HSP 2 Score: 41.5874 bits (96), Expect = 1.123e-19 Identity = 17/57 (29.82%), Postives = 38/57 (66.67%), Query Frame = -3 Query: 268 EVYKKVESMSVEIKMAGCMPDLSCALH-DVEVEDRELMMYYPSENLDVVFGIMNLIP 435 ++++ ++ M E+K++G +PD S +H ++ +++E+ + Y SE L + FG++N P Sbjct: 494 KLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPP 550
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.461e-19 Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = -1 Query: 108 ILSPEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 278 + P I+VTKN+R C D H+ +F+S +Y R +IVRD +RFHHF+GG+CSCND+W Sbjct: 535 VTPPGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591 HSP 2 Score: 38.891 bits (89), Expect = 1.461e-19 Identity = 17/54 (31.48%), Postives = 36/54 (66.67%), Query Frame = -3 Query: 280 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRE-LMMYYPSENLDVVFGIM 438 +E+YK + ++ ++K+AG + +++ LH++E E+ + + Y SE L + FGI+ Sbjct: 481 EEIYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGIL 534
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.893e-19 Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = -1 Query: 108 VIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 260 VI++ KN+RVC D H F+ +S +Y R+IIVRD RFH ++ G CSC DYW Sbjct: 672 VIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722 HSP 2 Score: 45.8246 bits (107), Expect = 1.893e-19 Identity = 20/53 (37.74%), Postives = 36/53 (67.92%), Query Frame = -3 Query: 277 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMN 435 E+Y K++ + ++K+AG +PD L DVE E+++ ++ + SE L + FG+MN Sbjct: 608 EIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMN 660
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 2.455e-19 Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = -1 Query: 108 EAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 266 + I++ KN+RVC D HS +FIS I R+IIVRD+NRFHHF+ G CSC DYW Sbjct: 771 KTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823 HSP 2 Score: 38.891 bits (89), Expect = 2.455e-19 Identity = 16/53 (30.19%), Postives = 34/53 (64.15%), Query Frame = -3 Query: 280 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIM 438 +E+Y+++ ++ ++KM G +PD L DVE +++E ++ SE L + F ++ Sbjct: 714 EEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALI 766
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.467e-19 Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = -1 Query: 108 SPEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 272 SP I++ KN+R+C D HS+ + IS +Y+RKI VRD RFHHF+ G+CSC DYW Sbjct: 592 SPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646 HSP 2 Score: 37.7354 bits (86), Expect = 2.467e-19 Identity = 20/57 (35.09%), Postives = 35/57 (61.40%), Query Frame = -3 Query: 268 KKVESMSVEI----KMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 426 K++ SM VEI ++AG P + L ++E ED+E +++Y SE + FG+++ P Sbjct: 537 KEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSP 593
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PPR74_ARATH (Pentatricopeptide repeat-containing protein At1g47580, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H50 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.524e-19 Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = -1 Query: 108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269 P I+V KN+R+C D H+ + +S I R+IIVRD RFHHF G CSC DYW Sbjct: 186 PGTTIRVMKNLRICGDCHNFIKILSSIEDREIIVRDNKRFHHFRDGNCSCGDYW 239 HSP 2 Score: 46.2098 bits (108), Expect = 2.524e-19 Identity = 20/56 (35.71%), Postives = 35/56 (62.50%), Query Frame = -3 Query: 268 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 435 + Y K++S+ E++ AG +P+ LHD++ E +E + + SE L + FGI+N P Sbjct: 131 KAYVKLKSLGKEVRDAGYVPETKYVLHDIDEEAKEKALMHHSERLAIAFGIINTPP 186
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.214e-19 Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = -1 Query: 108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257 I+V KN+RVC D H+A +F+S RR IIVRD NRFH FE G CSCNDYW Sbjct: 539 IRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588 HSP 2 Score: 40.0466 bits (92), Expect = 3.214e-19 Identity = 17/53 (32.08%), Postives = 33/53 (62.26%), Query Frame = -3 Query: 280 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIM 438 KE+Y+K+ + E++ AG + D S L +V+ +++ + Y SE L + FG++ Sbjct: 479 KEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLI 531
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.160e-19 Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = -1 Query: 108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269 P + + KN+RVC + H A + IS IY+R+II RD RFHHF G CSCNDYW Sbjct: 688 PGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741 HSP 2 Score: 41.2022 bits (95), Expect = 4.160e-19 Identity = 20/57 (35.09%), Postives = 35/57 (61.40%), Query Frame = -3 Query: 268 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 438 +E+Y +E M V ++ AG +PD S L ++E E +E + + SE L + FG+++ P Sbjct: 632 REIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKP 688 The following BLAST results are available for this feature:
BLAST of FC868853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868853 ID=FC868853; Name=FC868853; organism=Citrus clementina; type=EST; length=440bpback to top |