FC868853

Overview
NameFC868853
Unique NameFC868853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.170e-19
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = -1
Query:  108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            P + + V KN+RVC+D H+  + IS I  R+ +VRDA RFHHF+ G CSC DYW
Sbjct:  606 PGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659          

HSP 2 Score: 42.743 bits (99), Expect = 4.170e-19
Identity = 18/57 (31.58%), Postives = 36/57 (63.16%), Query Frame = -3
Query:  268 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 438
            +++Y+ +  ++ ++  AG + + S   HDV+ E++E+ +   SE L + FGIMN +P
Sbjct:  550 EKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVP 606          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.396e-19
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            ++V KN+RVC D H+A ++IS +  R+I++RD NRFHHF+ G CSCNDYW
Sbjct:  801 VRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850          

HSP 2 Score: 40.0466 bits (92), Expect = 5.396e-19
Identity = 18/57 (31.58%), Postives = 34/57 (59.65%), Query Frame = -3
Query:  277 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVE----DRELMMYYPSENLDVVFGIMN 435
            ++Y +++ +  EIK  G +PD    LH +E E    ++E ++Y  SE + V FG+++
Sbjct:  738 QIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLIS 794          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.057e-19
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = -1
Query:  108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            P + I + KN+RVC D H+A +  S +  R+IIVRD NRFHHF+ G CSC DYW
Sbjct:  580 PGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633          

HSP 2 Score: 39.2762 bits (90), Expect = 7.057e-19
Identity = 18/57 (31.58%), Postives = 34/57 (59.65%), Query Frame = -3
Query:  268 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 438
            +E+ +K E +  +IK  G +PD S  +  V+ ++RE+ + Y SE + + F ++N  P
Sbjct:  524 EEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPP 580          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP308_ARATH (Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 7.061e-19
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = -1
Query:  108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            P   I++ KN+RVC D H   + IS I  R+IIVRDA R+HHF+GG CSCND+W
Sbjct:  559 PGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612          

HSP 2 Score: 39.6614 bits (91), Expect = 7.061e-19
Identity = 14/58 (24.14%), Postives = 39/58 (67.24%), Query Frame = -3
Query:  268 KEVYKKVESMSVEIKMA-GCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 438
            +++++ ++ +  E+++  G +PD S  LHD++ +++E ++++ SE   V +G++  +P
Sbjct:  502 EDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVP 559          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PPR25_ARATH (Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 9.156e-19
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = -1
Query:  108 LSPEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 275
            LS    I+V KN+RVC+D H+A + IS +  R+II+RDANRFHHF  G CSC DYW
Sbjct:  650 LSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705          

HSP 2 Score: 37.7354 bits (86), Expect = 9.156e-19
Identity = 18/55 (32.73%), Postives = 32/55 (58.18%), Query Frame = -3
Query:  274 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNL 438
            + + K ++ +   ++ AG  PD S ALHDV+ E++   + Y SE L V + ++ L
Sbjct:  596 ESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKL 650          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP312_ARATH (Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.162e-19
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            I++TKN+R+C D HS F+F+S   +R+IIVRD NRFH F+ G CSC DYW
Sbjct:  635 IRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684          

HSP 2 Score: 39.6614 bits (91), Expect = 9.162e-19
Identity = 18/55 (32.73%), Postives = 34/55 (61.82%), Query Frame = -3
Query:  274 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNL 438
            KE+   +  +  E++ AG  PDL  +L+D+E E++   + + SE L + FG+++L
Sbjct:  575 KEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSL 629          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.190e-18
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = -1
Query:  108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            P   I+VTKN+R+C D H A +FIS I  R+IIVRD +RFHHF  G CSC DYW
Sbjct:  662 PGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715          

HSP 2 Score: 35.8094 bits (81), Expect = 1.190e-18
Identity = 17/51 (33.33%), Postives = 31/51 (60.78%), Query Frame = -3
Query:  268 VESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 420
            ++++  +++  G + D S  LHDV+ E +  +++  SE L V FGI+N  P
Sbjct:  612 LKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEP 662          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.553e-18
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = -1
Query:  108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            P ++I++ +N+R+C+D H+  + IS IY R+I+VRD NRFH F+GGTCSC DYW
Sbjct:  553 PGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606          

HSP 2 Score: 36.965 bits (84), Expect = 1.553e-18
Identity = 17/57 (29.82%), Postives = 33/57 (57.89%), Query Frame = -3
Query:  268 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 438
            KE+YK +  M  ++K  G  PDL+  L +V+ E+++  +   S+ + + FG++   P
Sbjct:  497 KEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPP 553          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.554e-18
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = -1
Query:  108 EAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 266
            +  I + KN+R+C D HSAF++IS +  R+I VRD  RFHHF+ G+CSC DYW
Sbjct:  531 DVAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583          

HSP 2 Score: 39.2762 bits (90), Expect = 1.554e-18
Identity = 18/55 (32.73%), Postives = 30/55 (54.55%), Query Frame = -3
Query:  271 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLI 435
            E+Y+ +E++    K  G  P     +H VE E++E  + Y SE L V FG++  +
Sbjct:  476 EIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTV 530          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.611e-18
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = -1
Query:  108 LSPEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 275
            L P   I++ KN+R C D H+ FRF+S++ +R II+RD  RFHHF  G CSC ++W
Sbjct:  735 LPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790          

HSP 2 Score: 40.0466 bits (92), Expect = 2.611e-18
Identity = 22/56 (39.29%), Postives = 33/56 (58.93%), Query Frame = -3
Query:  268 VYKKVESMSVEIKMAGCMPDLSCALHDVEVE-DRELMMYYPSENLDVVFGIMNLIP 432
            VY  ++ +  E++  G +PD S  LHDVE +  +E M+   SE + V FG+M L P
Sbjct:  682 VYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPP 737          
The following BLAST results are available for this feature:
BLAST of FC868853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
PP258_ARATH4.170e-1953.70Pentatricopeptide repeat-containing protein At3g26... [more]
PP272_ARATH5.396e-1958.00Pentatricopeptide repeat-containing protein At3g49... [more]
PP252_ARATH7.057e-1955.56Pentatricopeptide repeat-containing protein At3g24... [more]
PP308_ARATH7.061e-1957.41Pentatricopeptide repeat-containing protein At4g14... [more]
PPR25_ARATH9.156e-1958.93Pentatricopeptide repeat-containing protein At1g09... [more]
PP312_ARATH9.162e-1960.00Pentatricopeptide repeat-containing protein At4g14... [more]
PP251_ARATH1.190e-1861.11Putative pentatricopeptide repeat-containing prote... [more]
PPR68_ARATH1.553e-1855.56Pentatricopeptide repeat-containing protein At1g31... [more]
PP182_ARATH1.554e-1854.72Pentatricopeptide repeat-containing protein At2g33... [more]
PPR57_ARATH2.611e-1850.00Pentatricopeptide repeat-containing protein At1g25... [more]

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Properties
Property NameValue
Genbank descriptionC31005F06EF AbioticL1 Citrus clementina cDNA clone C31005F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868853 ID=FC868853; Name=FC868853; organism=Citrus clementina; type=EST; length=440bp
CTGTTCTCTATGGGAATGCCACAATTGGGCTAAAATGATTAGGATGAATT
CGTACAATGCTTGGCTTTGAGGTTCTAGTTATGTACGGGCTTACCTGGGA
TAGCTTACCAATAATCGTTGCATGAGCAAGTGCCACCTTCAAAATGATGG
AACCGATTTGCATCTCTAACAATGATCTTCCTTCGATAAATATATGAGAT
AAACCTGAATGCTGAGTGGTAATCATTGCAAACACGAACATTTTTTGTTA
CTTGAATTACTGCTTCTGGGGATAAGATTCATAATTCCAAAAACCACATC
CAGGTTCTCACTGGGGTAATACATCATGAGTTCCCTGTCTTCGACTTCCA
CATCATGTAGAGCGCATGATAGGTCCGGCATGCATCCTGCCATCTTTATC
TCAACTGACATGCTCTCTACTTTCTTGTAAACTTCTTTCC
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