FC868853
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 4.170e-19 Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = -1 Query: 108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269 P + + V KN+RVC+D H+ + IS I R+ +VRDA RFHHF+ G CSC DYW Sbjct: 606 PGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659 HSP 2 Score: 42.743 bits (99), Expect = 4.170e-19 Identity = 18/57 (31.58%), Postives = 36/57 (63.16%), Query Frame = -3 Query: 268 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 438 +++Y+ + ++ ++ AG + + S HDV+ E++E+ + SE L + FGIMN +P Sbjct: 550 EKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVP 606
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.396e-19 Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = -1 Query: 108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257 ++V KN+RVC D H+A ++IS + R+I++RD NRFHHF+ G CSCNDYW Sbjct: 801 VRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850 HSP 2 Score: 40.0466 bits (92), Expect = 5.396e-19 Identity = 18/57 (31.58%), Postives = 34/57 (59.65%), Query Frame = -3 Query: 277 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVE----DRELMMYYPSENLDVVFGIMN 435 ++Y +++ + EIK G +PD LH +E E ++E ++Y SE + V FG+++ Sbjct: 738 QIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLIS 794
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 7.057e-19 Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = -1 Query: 108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269 P + I + KN+RVC D H+A + S + R+IIVRD NRFHHF+ G CSC DYW Sbjct: 580 PGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633 HSP 2 Score: 39.2762 bits (90), Expect = 7.057e-19 Identity = 18/57 (31.58%), Postives = 34/57 (59.65%), Query Frame = -3 Query: 268 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 438 +E+ +K E + +IK G +PD S + V+ ++RE+ + Y SE + + F ++N P Sbjct: 524 EEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPP 580
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP308_ARATH (Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2 SV=3) HSP 1 Score: 75.0998 bits (183), Expect = 7.061e-19 Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = -1 Query: 108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269 P I++ KN+RVC D H + IS I R+IIVRDA R+HHF+GG CSCND+W Sbjct: 559 PGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612 HSP 2 Score: 39.6614 bits (91), Expect = 7.061e-19 Identity = 14/58 (24.14%), Postives = 39/58 (67.24%), Query Frame = -3 Query: 268 KEVYKKVESMSVEIKMA-GCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 438 +++++ ++ + E+++ G +PD S LHD++ +++E ++++ SE V +G++ +P Sbjct: 502 EDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVP 559
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PPR25_ARATH (Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 9.156e-19 Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = -1 Query: 108 LSPEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 275 LS I+V KN+RVC+D H+A + IS + R+II+RDANRFHHF G CSC DYW Sbjct: 650 LSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705 HSP 2 Score: 37.7354 bits (86), Expect = 9.156e-19 Identity = 18/55 (32.73%), Postives = 32/55 (58.18%), Query Frame = -3 Query: 274 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNL 438 + + K ++ + ++ AG PD S ALHDV+ E++ + Y SE L V + ++ L Sbjct: 596 ESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKL 650
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP312_ARATH (Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 9.162e-19 Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = -1 Query: 108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257 I++TKN+R+C D HS F+F+S +R+IIVRD NRFH F+ G CSC DYW Sbjct: 635 IRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684 HSP 2 Score: 39.6614 bits (91), Expect = 9.162e-19 Identity = 18/55 (32.73%), Postives = 34/55 (61.82%), Query Frame = -3 Query: 274 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNL 438 KE+ + + E++ AG PDL +L+D+E E++ + + SE L + FG+++L Sbjct: 575 KEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSL 629
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.190e-18 Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = -1 Query: 108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269 P I+VTKN+R+C D H A +FIS I R+IIVRD +RFHHF G CSC DYW Sbjct: 662 PGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715 HSP 2 Score: 35.8094 bits (81), Expect = 1.190e-18 Identity = 17/51 (33.33%), Postives = 31/51 (60.78%), Query Frame = -3 Query: 268 VESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 420 ++++ +++ G + D S LHDV+ E + +++ SE L V FGI+N P Sbjct: 612 LKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEP 662
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.553e-18 Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = -1 Query: 108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269 P ++I++ +N+R+C+D H+ + IS IY R+I+VRD NRFH F+GGTCSC DYW Sbjct: 553 PGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606 HSP 2 Score: 36.965 bits (84), Expect = 1.553e-18 Identity = 17/57 (29.82%), Postives = 33/57 (57.89%), Query Frame = -3 Query: 268 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 438 KE+YK + M ++K G PDL+ L +V+ E+++ + S+ + + FG++ P Sbjct: 497 KEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPP 553
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.554e-18 Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = -1 Query: 108 EAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 266 + I + KN+R+C D HSAF++IS + R+I VRD RFHHF+ G+CSC DYW Sbjct: 531 DVAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583 HSP 2 Score: 39.2762 bits (90), Expect = 1.554e-18 Identity = 18/55 (32.73%), Postives = 30/55 (54.55%), Query Frame = -3 Query: 271 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLI 435 E+Y+ +E++ K G P +H VE E++E + Y SE L V FG++ + Sbjct: 476 EIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTV 530
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.611e-18 Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = -1 Query: 108 LSPEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 275 L P I++ KN+R C D H+ FRF+S++ +R II+RD RFHHF G CSC ++W Sbjct: 735 LPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790 HSP 2 Score: 40.0466 bits (92), Expect = 2.611e-18 Identity = 22/56 (39.29%), Postives = 33/56 (58.93%), Query Frame = -3 Query: 268 VYKKVESMSVEIKMAGCMPDLSCALHDVEVE-DRELMMYYPSENLDVVFGIMNLIP 432 VY ++ + E++ G +PD S LHDVE + +E M+ SE + V FG+M L P Sbjct: 682 VYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPP 737 The following BLAST results are available for this feature:
BLAST of FC868853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868853 ID=FC868853; Name=FC868853; organism=Citrus clementina; type=EST; length=440bpback to top |