FC868853

Overview
NameFC868853
Unique NameFC868853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP386_ARATH (Pentatricopeptide repeat-containing protein At5g15340, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.624e-18
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = -1
Query:  108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            P   + V KN+R+C D HSA + +S +Y R+II+RD NRFH F+GG+CSC+DYW
Sbjct:  570 PSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSDYW 623          

HSP 2 Score: 35.039 bits (79), Expect = 2.624e-18
Identity = 20/59 (33.90%), Postives = 33/59 (55.93%), Query Frame = -3
Query:  268 KEVYKKVESMSVEIKMAGCMPDLSCALHDVE--VEDRELMMYYPSENLDVVFGIMNLIP 438
            KE+Y K+  +   I+ AG +PD+S  +   E  +E++E  +   SE L V FG++   P
Sbjct:  512 KEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAVCFGLLETKP 570          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.408e-18
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = -1
Query:  108 AVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 263
            A I++TKN+RVC D H+AF ++S I    II+RD++RFHHF+ G+CSC  YW
Sbjct:  799 AAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850          

HSP 2 Score: 39.2762 bits (90), Expect = 4.408e-18
Identity = 18/53 (33.96%), Postives = 33/53 (62.26%), Query Frame = -3
Query:  280 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIM 438
            KE+Y+ +      IK  G +P+   ALHDV+ E+++ +++  SE L + +GI+
Sbjct:  741 KEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGIL 793          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 5.766e-18
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            I+V KN+R+C D H+  +  S ++ R++ +RD NRFH    G CSC DYW
Sbjct:  579 IRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628          

HSP 2 Score: 51.9878 bits (123), Expect = 5.766e-18
Identity = 23/53 (43.40%), Postives = 38/53 (71.70%), Query Frame = -3
Query:  280 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIM 438
            +EV  K++ +S+++K AG +PDLSC L+DV+ E +E M+   SE L + FG++
Sbjct:  519 EEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLI 571          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PPR71_ARATH (Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 7.508e-18
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = -1
Query:  108 EAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 266
            E+ ++V  N+R+C D H  F+ IS IY+R+IIVRD  RFH F+ G+CSC D+W
Sbjct:  529 ESPVRVINNLRICGDCHVVFKHISKIYKREIIVRDRVRFHRFKDGSCSCRDFW 581          

HSP 2 Score: 41.2022 bits (95), Expect = 7.508e-18
Identity = 17/53 (32.08%), Postives = 32/53 (60.38%), Query Frame = -3
Query:  280 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIM 438
            +E+Y+K++ +  +I+  G +      LHD+  E++E  + Y SE L V +G+M
Sbjct:  469 REIYEKIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLM 521          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP140_ARATH (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.761e-18
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = -1
Query:  108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            P   I+V KN+R C+D H+  +F+S +   +II+RD NRFHHF  G CSC ++W
Sbjct:  531 PGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584          

HSP 2 Score: 45.0542 bits (105), Expect = 9.761e-18
Identity = 18/53 (33.96%), Postives = 34/53 (64.15%), Query Frame = -3
Query:  280 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIM 438
            K +Y+K++ +  +I+  G +PD     HDVE+E++E  + + SE L + FG++
Sbjct:  475 KAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLI 527          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PPR84_ARATH (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.643e-17
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = -1
Query:  108 PEAV-IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            PE V I+V KN+RVC D H+A + IS +  R+II+RDANRFHHF  G CSC DYW
Sbjct:  650 PEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704          

HSP 2 Score: 33.113 bits (74), Expect = 1.643e-17
Identity = 16/42 (38.10%), Postives = 25/42 (59.52%), Query Frame = -3
Query:  274 IKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNL 399
            ++ AG  PD S  LHDV+ E++   +   SE L V +G++ L
Sbjct:  608 LREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKL 649          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.618e-17
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = -1
Query:  108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            P + +++ KN+RVC+D H+  + IS I  RKI++RD NRFHHF  G+CSC D+W
Sbjct:  579 PGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632          

HSP 2 Score: 38.1206 bits (87), Expect = 3.618e-17
Identity = 17/57 (29.82%), Postives = 32/57 (56.14%), Query Frame = -3
Query:  268 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 438
            KE+Y  +  +S  IK  G +P+ +  L D+E  ++E  +   SE L + +G+++  P
Sbjct:  523 KEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKP 579          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.951e-17
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = -1
Query:  108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            P   I++ KN+RVC D H+  + IS +Y R++IVRD NRFHHF  G CSC DYW
Sbjct:  569 PGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622          

HSP 2 Score: 31.187 bits (69), Expect = 7.951e-17
Identity = 15/56 (26.79%), Postives = 31/56 (55.36%), Query Frame = -3
Query:  268 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 435
            ++ +K E +  +I++ G   +   A  DV+ E++E  ++  SE L + +G+M   P
Sbjct:  514 KIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKP 569          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP353_ARATH (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.031e-16
Identity = 35/59 (59.32%), Postives = 40/59 (67.80%), Query Frame = -1
Query:  108 ILSPE--AVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 278
            ILS E    I+V KN+R C D H A +FIS I +RKI VRD+ RFH FE G CSC DYW
Sbjct:  633 ILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691          

HSP 2 Score: 36.5798 bits (83), Expect = 1.031e-16
Identity = 18/53 (33.96%), Postives = 30/53 (56.60%), Query Frame = -3
Query:  277 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMN 435
            ++ + +  +  ++K  G +P  S  LHDVE E +E  + Y SE L V F I++
Sbjct:  583 QIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILS 635          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP206_ARATH (Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.256e-16
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = -1
Query:  108 ILSPEAV-IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 278
            I +PE   I V KN+R C D H+A + IS I +R+I VRD +RFHHF  G CSC DYW
Sbjct:  768 ISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825          

HSP 2 Score: 35.8094 bits (81), Expect = 2.256e-16
Identity = 16/53 (30.19%), Postives = 30/53 (56.60%), Query Frame = -3
Query:  277 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMN 435
            E+ +K+  ++ EI+  G  PD S  + DV+ + +   + Y SE L V F +++
Sbjct:  717 EIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALIS 769          
The following BLAST results are available for this feature:
BLAST of FC868853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
PP386_ARATH2.624e-1855.56Pentatricopeptide repeat-containing protein At5g15... [more]
PP390_ARATH4.408e-1855.77Pentatricopeptide repeat-containing protein At5g16... [more]
PP227_ARATH5.766e-1846.00Putative pentatricopeptide repeat-containing prote... [more]
PPR71_ARATH7.508e-1852.83Pentatricopeptide repeat-containing protein At1g34... [more]
PP140_ARATH9.761e-1848.15Pentatricopeptide repeat-containing protein At2g01... [more]
PPR84_ARATH1.643e-1761.82Pentatricopeptide repeat-containing protein At1g56... [more]
PP354_ARATH3.618e-1751.85Pentatricopeptide repeat-containing protein At4g37... [more]
PP367_ARATH7.951e-1755.56Pentatricopeptide repeat-containing protein At5g06... [more]
PP353_ARATH1.031e-1659.32Pentatricopeptide repeat-containing protein At4g37... [more]
PP206_ARATH2.256e-1655.17Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionC31005F06EF AbioticL1 Citrus clementina cDNA clone C31005F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868853 ID=FC868853; Name=FC868853; organism=Citrus clementina; type=EST; length=440bp
CTGTTCTCTATGGGAATGCCACAATTGGGCTAAAATGATTAGGATGAATT
CGTACAATGCTTGGCTTTGAGGTTCTAGTTATGTACGGGCTTACCTGGGA
TAGCTTACCAATAATCGTTGCATGAGCAAGTGCCACCTTCAAAATGATGG
AACCGATTTGCATCTCTAACAATGATCTTCCTTCGATAAATATATGAGAT
AAACCTGAATGCTGAGTGGTAATCATTGCAAACACGAACATTTTTTGTTA
CTTGAATTACTGCTTCTGGGGATAAGATTCATAATTCCAAAAACCACATC
CAGGTTCTCACTGGGGTAATACATCATGAGTTCCCTGTCTTCGACTTCCA
CATCATGTAGAGCGCATGATAGGTCCGGCATGCATCCTGCCATCTTTATC
TCAACTGACATGCTCTCTACTTTCTTGTAAACTTCTTTCC
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