FC868853

Overview
NameFC868853
Unique NameFC868853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP172_ARATH (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 4.946e-16
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = -1
Query:  108 VTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEG-GTCSCNDYW 251
            + KN+RVC D H   + I+ I  R+I+VRD+NRFHHF   G CSC D+W
Sbjct:  820 IIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868          

HSP 2 Score: 41.5874 bits (96), Expect = 4.946e-16
Identity = 18/52 (34.62%), Postives = 31/52 (59.62%), Query Frame = -3
Query:  280 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIM 435
            ++Y K+E +S  +K  G  PD S  L D++ E +E ++   SE L + FG++
Sbjct:  759 QIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLI 810          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.450e-16
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            I+V KN+RVC D H+A + IS +  R+I+VRDA RFH F+ GTCSC D+W
Sbjct:  694 IRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743          

HSP 2 Score: 38.1206 bits (87), Expect = 6.450e-16
Identity = 19/52 (36.54%), Postives = 30/52 (57.69%), Query Frame = -3
Query:  280 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIM 435
            ++Y K+E ++ +I   G  PD S   HDVE   +  M+ Y SE L + FG++
Sbjct:  635 QIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLI 686          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.093e-15
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = -1
Query:  108 LSPEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 275
            L P+  I++ KN+RVCND H   + IS ++  +IIVRD  RFHHF+ G+CSC DYW
Sbjct:  583 LPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638          

HSP 2 Score: 30.8018 bits (68), Expect = 1.093e-15
Identity = 18/60 (30.00%), Postives = 35/60 (58.33%), Query Frame = -3
Query:  265 KEVYKKVESMSVEIKMAGCMPDLSCA-LHDVEVE-DRELMMYYPSENLDVVFGIMNLIPR 438
            K++Y++++ +   ++  G +PD S A L D   +  +E  +   SE L + FG++NL P+
Sbjct:  527 KQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQ 586          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 1.846e-15
Identity = 27/56 (48.21%), Postives = 35/56 (62.50%), Query Frame = -1
Query:  108 LSPEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 275
            L   + +++ KN+R+C D H   +  S   RR IIVRD NRFHHF  G CSC D+W
Sbjct:  580 LPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635          

HSP 2 Score: 38.5058 bits (88), Expect = 1.846e-15
Identity = 17/55 (30.91%), Postives = 33/55 (60.00%), Query Frame = -3
Query:  274 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNL 438
            +E+   ++++ ++ +  G  P +   LHDVE+  +E ++   SE L +VFG+M L
Sbjct:  526 REICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCL 580          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.848e-15
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = -1
Query:  108 LSPEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 275
            L  +  I++ KN+RVC D H     IS I+ R+IIVRD NRFHHF+ G CSCN +W
Sbjct:  557 LKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612          

HSP 2 Score: 31.187 bits (69), Expect = 1.848e-15
Identity = 14/48 (29.17%), Postives = 28/48 (58.33%), Query Frame = -3
Query:  274 ESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNL 417
            + +S  +++AG   D +  + D++ E++E  +   SE   + FGIM+L
Sbjct:  510 KDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSL 557          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.853e-15
Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = -1
Query:  108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            P   + + KN+RVC D H+  + +S I  R +IVRD  RFHHF+ G CSC DYW
Sbjct:  526 PRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRDNKRFHHFKDGKCSCGDYW 579          

HSP 2 Score: 34.2686 bits (77), Expect = 6.853e-15
Identity = 15/39 (38.46%), Postives = 23/39 (58.97%), Query Frame = -3
Query:  265 MPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIPR 381
            +PD    LHD++ E +E  + Y SE L + +GI+   PR
Sbjct:  489 VPDTRFVLHDIDQEAKEQALLYHSERLAIAYGIICTPPR 527          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP307_ARATH (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 7.369e-15
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            I V KN+RVCND H+  +F+S +  R+IIVRDA RFHHFEGG CSC DYW
Sbjct: 1015 INVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.864e-15
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            +Q+T+N R+C + H    FIS +  R+++VRDA+RFHHF+ G CSC  YW
Sbjct:  652 LQITQNHRICKNCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701          

HSP 2 Score: 34.6538 bits (78), Expect = 8.864e-15
Identity = 16/54 (29.63%), Postives = 31/54 (57.41%), Query Frame = -3
Query:  277 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMN 438
            +++Y+KV+ +  EI   G   +    L DV+ ++ E +  Y SE L + +G++N
Sbjct:  592 RQIYQKVDELMEEISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVN 645          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP446_ARATH (Pentatricopeptide repeat-containing protein At5g65570 OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.522e-14
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            I++ KN+RVC D HS  + +S + +R+II RD+ RFHHF  G+CSC DYW
Sbjct:  689 IRILKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDGSCSCGDYW 738          

HSP 2 Score: 30.0314 bits (66), Expect = 2.522e-14
Identity = 13/52 (25.00%), Postives = 27/52 (51.92%), Query Frame = -3
Query:  283 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGI 438
            +++ + +E +  + K  G + D SC   D+E   +E  ++  SE L + F +
Sbjct:  630 EQILENLEELIKKSKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFAV 681          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP411_ARATH (Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.277e-14
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = -1
Query:  108 ILSPEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 278
            ++SP   I + KN+R+C D H   + IS I +R+II+RD+ RFHHF  G+CSC+DYW
Sbjct:  552 VVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608          

HSP 2 Score: 26.1794 bits (56), Expect = 4.277e-14
Identity = 17/57 (29.82%), Postives = 28/57 (49.12%), Query Frame = -3
Query:  268 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNLIP 438
            KE+ KK++S        G        LHDV  + +E M+   SE + + FG++ + P
Sbjct:  505 KEIRKKMKSEM------GYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSP 555          
The following BLAST results are available for this feature:
BLAST of FC868853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
PP172_ARATH4.946e-1653.06Pentatricopeptide repeat-containing protein At2g27... [more]
PP108_ARATH6.450e-1658.00Putative pentatricopeptide repeat-containing prote... [more]
PPR85_ARATH1.093e-1553.57Pentatricopeptide repeat-containing protein At1g59... [more]
PP364_ARATH1.846e-1548.21Pentatricopeptide repeat-containing protein At5g04... [more]
PP410_ARATH1.848e-1553.57Putative pentatricopeptide repeat-containing prote... [more]
PP153_ARATH6.853e-1550.00Pentatricopeptide repeat-containing protein At2g15... [more]
PP307_ARATH7.369e-1566.00Pentatricopeptide repeat-containing protein At4g13... [more]
PP427_ARATH8.864e-1550.00Pentatricopeptide repeat-containing protein At5g50... [more]
PP446_ARATH2.522e-1454.00Pentatricopeptide repeat-containing protein At5g65... [more]
PP411_ARATH4.277e-1450.88Pentatricopeptide repeat-containing protein At5g40... [more]

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Properties
Property NameValue
Genbank descriptionC31005F06EF AbioticL1 Citrus clementina cDNA clone C31005F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868853 ID=FC868853; Name=FC868853; organism=Citrus clementina; type=EST; length=440bp
CTGTTCTCTATGGGAATGCCACAATTGGGCTAAAATGATTAGGATGAATT
CGTACAATGCTTGGCTTTGAGGTTCTAGTTATGTACGGGCTTACCTGGGA
TAGCTTACCAATAATCGTTGCATGAGCAAGTGCCACCTTCAAAATGATGG
AACCGATTTGCATCTCTAACAATGATCTTCCTTCGATAAATATATGAGAT
AAACCTGAATGCTGAGTGGTAATCATTGCAAACACGAACATTTTTTGTTA
CTTGAATTACTGCTTCTGGGGATAAGATTCATAATTCCAAAAACCACATC
CAGGTTCTCACTGGGGTAATACATCATGAGTTCCCTGTCTTCGACTTCCA
CATCATGTAGAGCGCATGATAGGTCCGGCATGCATCCTGCCATCTTTATC
TCAACTGACATGCTCTCTACTTTCTTGTAAACTTCTTTCC
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