FC868853

Overview
NameFC868853
Unique NameFC868853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.777e-14
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = -1
Query:  108 ILSPEA--VIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 278
            ++S EA  VI+V KN+RVC D HS  + IS +Y R+IIVRD  RFHHF  G CSCND+W
Sbjct:  680 LISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP229_ARATH (Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.535e-14
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            I++TKN+RVC D HS  + +S + RR I++RD  RFHHF  G CSC DYW
Sbjct:  661 IRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKDYW 710          

HSP 2 Score: 27.7202 bits (60), Expect = 5.535e-14
Identity = 16/52 (30.77%), Postives = 27/52 (51.92%), Query Frame = -3
Query:  277 YKKV-ESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMN 429
            YKKV   +   I+ +G  P+ S  LHDV+ E +   +   SE L   + +++
Sbjct:  603 YKKVWTELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTYSLIH 654          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.160e-14
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            I++ KN+RVC+D HS  +F S +Y R+II+RD NRFH+   G CSC D+W
Sbjct:  793 IRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842          

HSP 2 Score: 29.261 bits (64), Expect = 7.160e-14
Identity = 14/48 (29.17%), Postives = 28/48 (58.33%), Query Frame = -3
Query:  277 VESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMN 420
            ++ +S      G +PDLS  L DV+ +++  M+   SE L + +G+++
Sbjct:  739 LDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLIS 786          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 7.211e-14
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = -1
Query:  108 EAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 266
            E VI++ KN+R+C D H   +  S +  R I++RD  R+HHF+ G CSC DYW
Sbjct:  578 EKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630          

HSP 2 Score: 33.8834 bits (76), Expect = 7.211e-14
Identity = 18/54 (33.33%), Postives = 29/54 (53.70%), Query Frame = -3
Query:  274 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIMNL 435
            EV KK+  +   +   G +P+ +  L D+E E  E  + + SE L + FG+M L
Sbjct:  522 EVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTL 575          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP114_ARATH (Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.212e-13
Identity = 25/51 (49.02%), Postives = 38/51 (74.51%), Query Frame = -1
Query:  108 VIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 260
            +IQ+ KN R+C D H+  +  S +  ++I++RD+NRFHHF+  +CSCNDYW
Sbjct:  695 LIQIMKNTRICIDCHNFMKLASKLLGKEILMRDSNRFHHFKDSSCSCNDYW 745          

HSP 2 Score: 29.261 bits (64), Expect = 1.212e-13
Identity = 15/52 (28.85%), Postives = 31/52 (59.62%), Query Frame = -3
Query:  280 VYKKVESMSVEIKMAGCMPDLSCALHDVEVEDREL-MMYYPSENLDVVFGIM 432
            VY++++ +   +K  G +P++  A  D+E E++E   + + SE L + F +M
Sbjct:  632 VYRELKRLISWLKEMGYVPEMRSASQDIEDEEQEEDNLLHHSEKLALAFAVM 683          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.390e-13
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = -1
Query:  108 ILSPE-AVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 278
            I +PE + I V KN+RVC D H A + +S +Y R+I+VRD +RFHHF+ G+CSC DYW
Sbjct:  538 ISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP296_ARATH (Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.390e-13
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = -1
Query:  108 AVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 263
            A +++TKN+RVC D H+  + +S ++RR I++RDANRFHHFE G CSC D W
Sbjct:  909 ACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.815e-13
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = -1
Query:  108 VIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 260
            VI+V KN+RVC D H   + IS I RR+I+VRD NRFH F  G+CSCNDYW
Sbjct:  635 VIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.371e-13
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = -1
Query:  108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            P  +I++ KN+RVC D H   + IS IY+R I++RD  RFHHF  G CSC DYW
Sbjct:  567 PGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.449e-13
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = -1
Query:  108 SPEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 272
            S    I+V KN+R+C D H+A + IS +  R+I+VRD  RFHHF+ G CSC DYW
Sbjct:  916 SEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970          

HSP 2 Score: 24.6386 bits (52), Expect = 4.449e-13
Identity = 11/44 (25.00%), Postives = 22/44 (50.00%), Query Frame = -3
Query:  280 MSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIM 411
            + ++I   G  PD     HD+  E++   +   SE L + +G++
Sbjct:  870 LEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLI 913          
The following BLAST results are available for this feature:
BLAST of FC868853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
PP175_ARATH4.777e-1459.32Pentatricopeptide repeat-containing protein At2g29... [more]
PP229_ARATH5.535e-1456.00Pentatricopeptide repeat-containing protein At3g14... [more]
PP249_ARATH7.160e-1454.00Pentatricopeptide repeat-containing protein At3g22... [more]
PP147_ARATH7.211e-1447.17Pentatricopeptide repeat-containing protein At2g03... [more]
PP114_ARATH1.212e-1349.02Pentatricopeptide repeat-containing protein At1g71... [more]
PP330_ARATH1.390e-1355.17Pentatricopeptide repeat-containing protein At4g21... [more]
PP296_ARATH1.390e-1355.77Pentatricopeptide repeat-containing protein At3g63... [more]
PP219_ARATH1.815e-1362.75Putative pentatricopeptide repeat-containing prote... [more]
PP449_ARATH2.371e-1353.70Pentatricopeptide repeat-containing protein At5g66... [more]
PPR48_ARATH4.449e-1352.73Pentatricopeptide repeat-containing protein At1g18... [more]

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Properties
Property NameValue
Genbank descriptionC31005F06EF AbioticL1 Citrus clementina cDNA clone C31005F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868853 ID=FC868853; Name=FC868853; organism=Citrus clementina; type=EST; length=440bp
CTGTTCTCTATGGGAATGCCACAATTGGGCTAAAATGATTAGGATGAATT
CGTACAATGCTTGGCTTTGAGGTTCTAGTTATGTACGGGCTTACCTGGGA
TAGCTTACCAATAATCGTTGCATGAGCAAGTGCCACCTTCAAAATGATGG
AACCGATTTGCATCTCTAACAATGATCTTCCTTCGATAAATATATGAGAT
AAACCTGAATGCTGAGTGGTAATCATTGCAAACACGAACATTTTTTGTTA
CTTGAATTACTGCTTCTGGGGATAAGATTCATAATTCCAAAAACCACATC
CAGGTTCTCACTGGGGTAATACATCATGAGTTCCCTGTCTTCGACTTCCA
CATCATGTAGAGCGCATGATAGGTCCGGCATGCATCCTGCCATCTTTATC
TCAACTGACATGCTCTCTACTTTCTTGTAAACTTCTTTCC
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