FC868853

Overview
NameFC868853
Unique NameFC868853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.281e-13
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            +++TKN+RVC D HS  +++S  + R+IIVRD  RFHHF  G CSCNDYW
Sbjct:  532 LRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PPR10_ARATH (Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 9.009e-13
Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = -1
Query:  108 SPEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 272
            +P   I++ KN+R+C D HS  +++S I +R I++RDA +FHHF+ G CSC DYW
Sbjct:  611 APGTTIRIIKNLRICGDCHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCGDYW 665          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.177e-12
Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = -1
Query:  108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            P   +++ KN+R+C D H   + IS ++ R+I+VRD NRFHHF  G+CSC D+W
Sbjct:  520 PGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP297_ARATH (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=2 SV=2)

HSP 1 Score: 59.6918 bits (143), Expect = 1.272e-12
Identity = 22/52 (42.31%), Postives = 35/52 (67.31%), Query Frame = -1
Query:  108 AVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 263
            A I+V KN  +C+D H+  +++S +  R+I++++  R HHF  G CSCND W
Sbjct:  717 APIRVVKNTNICSDSHTVAKYMSVLRNREIVLQEGARVHHFRDGKCSCNDSW 768          

HSP 2 Score: 33.8834 bits (76), Expect = 1.272e-12
Identity = 13/52 (25.00%), Postives = 31/52 (59.62%), Query Frame = -3
Query:  280 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIM 435
            ++Y ++  +  E+K +G +PD SC   D+   ++E ++   +E L + +G++
Sbjct:  660 DIYFELYKLVSEMKKSGYVPDTSCIHQDISDSEKEKLLMGHTEKLAMTYGLI 711          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.537e-12
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            I V KN+RVC D H+A ++IS +  R+I+VRD  RFHHF+ G CSC DYW
Sbjct:  760 IHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            I + KN+R+C+D HSA + IS I +R +++RD NRFHHF  G CSC D+W
Sbjct:  773 ILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.166e-12
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = -1
Query:  108 AVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 263
            ++I+V KN+RVC D H+A + +S I  R++I RDA RFHH + G CSC +YW
Sbjct:  486 SLIRVMKNLRVCADCHNALKLMSKIVGRELISRDAKRFHHMKDGVCSCREYW 537          

HSP 2 Score: 26.1794 bits (56), Expect = 2.166e-12
Identity = 12/44 (27.27%), Postives = 25/44 (56.82%), Query Frame = -3
Query:  307 KEVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSE 438
            +E+Y  ++S+   +   G +P    ALHDV+ E ++  ++  +E
Sbjct:  428 RELYMALKSLKEHMIEIGYVPLSKLALHDVDQESKDENLFNHNE 471          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP313_ARATH (Pentatricopeptide repeat-containing protein At4g15720 OS=Arabidopsis thaliana GN=PCMP-H1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.471e-12
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = -1
Query:  108 AVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 263
            + I++  N+R+C D H AF+ IS I  R+I+VRD NRFH F+ G+C+C DYW
Sbjct:  565 STIRIMNNLRMCRDCHEAFKLISEIVEREIVVRDVNRFHCFKNGSCTCRDYW 616          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.471e-12
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            +++TKN+R C + H+A + IS +  R+I+VRD NRFHHF+ G CSC DYW
Sbjct:  645 LRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.839e-12
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = -1
Query:  108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            P   +QV KN+RVC D H   + IS I  R+I+VRDANRFH F+ GTCSC D W
Sbjct:  829 PGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882          
The following BLAST results are available for this feature:
BLAST of FC868853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
PP284_ARATH5.281e-1358.00Pentatricopeptide repeat-containing protein At3g56... [more]
PPR10_ARATH9.009e-1349.09Pentatricopeptide repeat-containing protein At1g04... [more]
PP295_ARATH1.177e-1248.15Pentatricopeptide repeat-containing protein At3g62... [more]
PP297_ARATH1.272e-1242.31Pentatricopeptide repeat-containing protein At4g01... [more]
PPR32_ARATH1.537e-1258.00Pentatricopeptide repeat-containing protein At1g11... [more]
PP377_ARATH2.007e-1254.00Putative pentatricopeptide repeat-containing prote... [more]
PP346_ARATH2.166e-1251.92Pentatricopeptide repeat-containing protein At4g32... [more]
PP313_ARATH4.471e-1251.92Pentatricopeptide repeat-containing protein At4g15... [more]
PP224_ARATH4.471e-1254.00Pentatricopeptide repeat-containing protein At3g12... [more]
PP210_ARATH5.839e-1257.41Pentatricopeptide repeat-containing protein At3g03... [more]

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Properties
Property NameValue
Genbank descriptionC31005F06EF AbioticL1 Citrus clementina cDNA clone C31005F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868853 ID=FC868853; Name=FC868853; organism=Citrus clementina; type=EST; length=440bp
CTGTTCTCTATGGGAATGCCACAATTGGGCTAAAATGATTAGGATGAATT
CGTACAATGCTTGGCTTTGAGGTTCTAGTTATGTACGGGCTTACCTGGGA
TAGCTTACCAATAATCGTTGCATGAGCAAGTGCCACCTTCAAAATGATGG
AACCGATTTGCATCTCTAACAATGATCTTCCTTCGATAAATATATGAGAT
AAACCTGAATGCTGAGTGGTAATCATTGCAAACACGAACATTTTTTGTTA
CTTGAATTACTGCTTCTGGGGATAAGATTCATAATTCCAAAAACCACATC
CAGGTTCTCACTGGGGTAATACATCATGAGTTCCCTGTCTTCGACTTCCA
CATCATGTAGAGCGCATGATAGGTCCGGCATGCATCCTGCCATCTTTATC
TCAACTGACATGCTCTCTACTTTCTTGTAAACTTCTTTCC
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