FC868853

Overview
NameFC868853
Unique NameFC868853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.626e-12
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = -1
Query:  108 VIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 260
            +I+VTKN+RVC D H   +F+S + RR+I++RD+NRFH F+ G CSC  +W
Sbjct:  821 IIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP122_ARATH (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.626e-12
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = -1
Query:  108 LSPEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 275
            LS  A I++ KN+R+C D H+  +  S +Y  +I+VRD NRFH F+ G+CSC DYW
Sbjct:  588 LSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.960e-12
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = -1
Query:  108 IQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 257
            I++TKN+R+C D H   +FIS    ++I+VRD NRFH F+ G CSC DYW
Sbjct:  608 IRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP417_ARATH (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.929e-11
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = -1
Query:  108 EAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 266
            ++ I + KN+R+C D H   R  S +  + II+RD  RFHHF  G CSC D+W
Sbjct:  605 DSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657          

HSP 2 Score: 29.261 bits (64), Expect = 2.929e-11
Identity = 13/52 (25.00%), Postives = 27/52 (51.92%), Query Frame = -3
Query:  280 EVYKKVESMSVEIKMAGCMPDLSCALHDVEVEDRELMMYYPSENLDVVFGIM 435
            ++  K+E +   + + G  PDLS   +DV    + L++   +E L + F ++
Sbjct:  549 KIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLL 600          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.808e-11
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = -1
Query:  108 PEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 269
            P   I V KN+RVC D H   + +S I  R+ +VRDA+RFH+F+ G CSC DYW
Sbjct:  570 PGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623          

HSP 2 Score: 22.7126 bits (47), Expect = 3.808e-11
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = -3
Query:  268 SENLDVVFGIMNLIP 312
            SE L + FGI+N IP
Sbjct:  556 SERLAIAFGILNSIP 570          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP428_ARATH (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 8.432e-11
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = -1
Query:  108 SPEAVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 272
            SP   I++ KN+R+C+D H+  + +S +  R II+RD  RFH FE G CSC DYW
Sbjct:  480 SPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCRDYW 534          
BLAST of FC868853 vs. ExPASy Swiss-Prot
Match: PP378_ARATH (Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.432e-11
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = -1
Query:  108 AVIQVTKNVRVCNDYHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 263
            A I+V KN+R C D H   + +S +   +I++RD+ RFHHF+ G CSCNDYW
Sbjct:  701 APIKVFKNLRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 752          
The following BLAST results are available for this feature:
BLAST of FC868853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
PP320_ARATH7.626e-1252.94Pentatricopeptide repeat-containing protein At4g18... [more]
PP122_ARATH7.626e-1250.00Pentatricopeptide repeat-containing protein At1g74... [more]
PP265_ARATH9.960e-1254.00Pentatricopeptide repeat-containing protein At3g46... [more]
PP417_ARATH2.929e-1145.28Pentatricopeptide repeat-containing protein At5g44... [more]
PP223_ARATH3.808e-1151.85Putative pentatricopeptide repeat-containing prote... [more]
PP428_ARATH8.432e-1149.09Pentatricopeptide repeat-containing protein At5g50... [more]
PP378_ARATH8.432e-1150.00Pentatricopeptide repeat-containing protein At5g13... [more]

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Properties
Property NameValue
Genbank descriptionC31005F06EF AbioticL1 Citrus clementina cDNA clone C31005F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868853 ID=FC868853; Name=FC868853; organism=Citrus clementina; type=EST; length=440bp
CTGTTCTCTATGGGAATGCCACAATTGGGCTAAAATGATTAGGATGAATT
CGTACAATGCTTGGCTTTGAGGTTCTAGTTATGTACGGGCTTACCTGGGA
TAGCTTACCAATAATCGTTGCATGAGCAAGTGCCACCTTCAAAATGATGG
AACCGATTTGCATCTCTAACAATGATCTTCCTTCGATAAATATATGAGAT
AAACCTGAATGCTGAGTGGTAATCATTGCAAACACGAACATTTTTTGTTA
CTTGAATTACTGCTTCTGGGGATAAGATTCATAATTCCAAAAACCACATC
CAGGTTCTCACTGGGGTAATACATCATGAGTTCCCTGTCTTCGACTTCCA
CATCATGTAGAGCGCATGATAGGTCCGGCATGCATCCTGCCATCTTTATC
TCAACTGACATGCTCTCTACTTTCTTGTAAACTTCTTTCC
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