FC868864
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.042e-37 Identity = 68/149 (45.64%), Postives = 96/149 (64.43%), Query Frame = -2 Query: 184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630 K R + +KG+KK S IE + F D+ +P +E+Y +E M V ++ AG++PD S L ++E+E +E L +HSEKLA+AFG+++ P + + KNLRVC +CH A + IS IY+R+II RD RFHHF G CSCNDYW Sbjct: 593 KTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741 HSP 2 Score: 31.9574 bits (71), Expect = 1.042e-37 Identity = 12/22 (54.55%), Postives = 18/22 (81.82%), Query Frame = -3 Query: 633 EHTGYFVLMSNIYAASNKWREV 698 E+ G +VL+SNIYA++ +W EV Sbjct: 570 ENPGSYVLLSNIYASAGRWNEV 591
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 3.901e-37 Identity = 68/149 (45.64%), Postives = 100/149 (67.11%), Query Frame = -2 Query: 184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630 ++R M++KG+KK S +E K F D+ +P+ KE+Y+ + IK GY+P+ ALHDV+DE+++ +L HSEKLA+A+GI+ A I++TKNLRVC DCH+AF ++S I II+RD++RFHHF+ G+CSC YW Sbjct: 702 RIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850 HSP 2 Score: 28.8758 bits (63), Expect = 3.901e-37 Identity = 9/21 (42.86%), Postives = 16/21 (76.19%), Query Frame = -3 Query: 633 HTGYFVLMSNIYAASNKWREV 695 H G + L+SN+YA + +W++V Sbjct: 680 HDGSYTLLSNLYANAGRWKDV 700
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP140_ARATH (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=2 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 3.918e-37 Identity = 66/149 (44.30%), Postives = 99/149 (66.44%), Query Frame = -2 Query: 184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630 K+R M+ G KK AA+S +E+ I F+ D+ +P K +Y+K++ + +I+ GY+PD HDVE E++E L++HSEKLA+AFG++ P I+V KNLR C+DCH+ +F+S + +II+RD NRFHHF G CSC ++W Sbjct: 436 KVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584 HSP 2 Score: 28.4906 bits (62), Expect = 3.918e-37 Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = -3 Query: 642 YFVLMSNIYAASNKW 686 Y VL+SNIYAA+ KW Sbjct: 417 YHVLLSNIYAAAGKW 431
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 5.082e-37 Identity = 69/162 (42.59%), Postives = 102/162 (62.96%), Query Frame = -2 Query: 184 CIKQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDE----DREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 657 C + S ++R MK + L K S IE G I F+ D +P ++Y +++ + EIK GY+PD LH +E+E ++E +L HSEK+AVAFG+++ + ++V KNLRVC DCH+A ++IS + R+I++RD NRFHHF+ G CSCNDYW Sbjct: 689 CAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850 HSP 2 Score: 25.0238 bits (53), Expect = 5.082e-37 Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = -3 Query: 636 FVLMSNIYAASNKWRE 683 ++ +SNIYA + KW E Sbjct: 680 YIQLSNIYACAGKWEE 695
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP419_ARATH (Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 5.093e-37 Identity = 73/150 (48.67%), Postives = 100/150 (66.67%), Query Frame = -2 Query: 184 KLREDMKNKGL-KKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630 KLR MK G+ KKP + V+ GK + F + D+ P+ +Y+K+E + ++K GY PD ALHDVEDE +E ML YHSE+LA+AFG++N + + V KNLRVC DCH+ + IS + R+I++RD RFHHF+ GTCSC DYW Sbjct: 551 KLRVKMKKNGIMKKPGSSWVVIRGKKHE-FFSGDQ--PHCSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGDYW 697 HSP 2 Score: 26.1794 bits (56), Expect = 5.093e-37 Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = -3 Query: 633 FVLMSNIYAASNKWREV 683 +VL+SNIYA++ +W V Sbjct: 533 YVLLSNIYASAGRWSNV 549
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2) HSP 1 Score: 143.665 bits (361), Expect = 5.102e-37 Identity = 65/149 (43.62%), Postives = 97/149 (65.10%), Query Frame = -2 Query: 184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALH-DVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627 LR+ MK++ K S IE + F + D V ++++ ++ M E+K++GY+PD S +H ++ D+++E L YHSEKLA+ FG++N P I+V KNLRVC DCH+A + IS I+ RK+++RD RFHHFE G CSC D+W Sbjct: 455 LRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603 HSP 2 Score: 31.9574 bits (71), Expect = 5.102e-37 Identity = 14/31 (45.16%), Postives = 20/31 (64.52%), Query Frame = -3 Query: 603 HTGYFVLMSNIYAASNKWREVGS*EKI*KIR 695 H G +V++SN+YA + KW V S K+ K R Sbjct: 432 HGGDYVILSNLYARNKKWEYVDSLRKVMKDR 462
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP312_ARATH (Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 8.645e-37 Identity = 68/153 (44.44%), Postives = 102/153 (66.67%), Query Frame = -2 Query: 184 ARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 642 A + +RE++K G+KK A +S I + F DR + KE+ + + E++ AGY PDL +L+D+E+E++ +++HSEKLA+AFG+++L I++TKNLR+C DCHS F+F+S +R+IIVRD NRFH F+ G CSC DYW Sbjct: 532 AEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684 HSP 2 Score: 25.0238 bits (53), Expect = 8.645e-37 Identity = 9/22 (40.91%), Postives = 15/22 (68.18%), Query Frame = -3 Query: 627 TGYFVLMSNIYAASNKWREVGS 692 +G VL+SN +AA+ +W E + Sbjct: 515 SGNHVLLSNTFAAAGRWAEANT 536
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2) HSP 1 Score: 144.821 bits (364), Expect = 8.659e-37 Identity = 63/149 (42.28%), Postives = 97/149 (65.10%), Query Frame = -2 Query: 184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630 K+R+ M G+KK S++E G + F D+ +P +Y K++ M ++ GY+P +S DVE+E++E+ + YHSEK+A+AF +++ + I V KNLRVC DCH A + +S +Y R+I+VRD +RFHHF+ G+CSC DYW Sbjct: 447 KIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595 HSP 2 Score: 30.0314 bits (66), Expect = 8.659e-37 Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = -3 Query: 633 HTGYFVLMSNIYAASNKWREV 695 H+G +VL+SN+YA+ +W +V Sbjct: 425 HSGDYVLLSNMYASEQRWSDV 445
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.405e-36 Identity = 68/149 (45.64%), Postives = 99/149 (66.44%), Query Frame = -2 Query: 184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630 ++R MKN+GL KP FS++E ++ F D +P +++Y+ + + ++ AGY+ + S HDV++E++E L HSEKLA+AFGIMN P + + V KNLRVC+DCH+ + IS I R+ +VRDA RFHHF+ G CSC DYW Sbjct: 511 RVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP198_ARATH (Pentatricopeptide repeat-containing protein At2g41080 OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2) HSP 1 Score: 151.369 bits (381), Expect = 4.448e-36 Identity = 73/169 (43.20%), Postives = 107/169 (63.31%), Query Frame = -2 Query: 184 WIFCANVKYIRCIKQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 690 ++ ANV K+ ++R+ M++K +KK A S E+ ++ F DR KE+Y ++ + +E+K+ GY PD + LHD+++E++E L HSEKLAVAF +M L A I++ KNLRVC+DCH AF++IS I R+I +RD +RFHHF G CSC DYW Sbjct: 484 YVLLANVH--ASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650 The following BLAST results are available for this feature:
BLAST of FC868864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 87
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868864 ID=FC868864; Name=FC868864; organism=Citrus clementina; type=EST; length=700bpback to top |