FC868864

Overview
NameFC868864
Unique NameFC868864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.042e-37
Identity = 68/149 (45.64%), Postives = 96/149 (64.43%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            K R  + +KG+KK    S IE    +  F   D+ +P  +E+Y  +E M V ++ AG++PD S  L ++E+E +E  L +HSEKLA+AFG+++  P   + + KNLRVC +CH A + IS IY+R+II RD  RFHHF  G CSCNDYW
Sbjct:  593 KTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741          

HSP 2 Score: 31.9574 bits (71), Expect = 1.042e-37
Identity = 12/22 (54.55%), Postives = 18/22 (81.82%), Query Frame = -3
Query:  633 EHTGYFVLMSNIYAASNKWREV 698
            E+ G +VL+SNIYA++ +W EV
Sbjct:  570 ENPGSYVLLSNIYASAGRWNEV 591          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.901e-37
Identity = 68/149 (45.64%), Postives = 100/149 (67.11%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            ++R  M++KG+KK    S +E  K    F   D+ +P+ KE+Y+ +      IK  GY+P+   ALHDV+DE+++ +L  HSEKLA+A+GI+     A I++TKNLRVC DCH+AF ++S I    II+RD++RFHHF+ G+CSC  YW
Sbjct:  702 RIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850          

HSP 2 Score: 28.8758 bits (63), Expect = 3.901e-37
Identity = 9/21 (42.86%), Postives = 16/21 (76.19%), Query Frame = -3
Query:  633 HTGYFVLMSNIYAASNKWREV 695
            H G + L+SN+YA + +W++V
Sbjct:  680 HDGSYTLLSNLYANAGRWKDV 700          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP140_ARATH (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.918e-37
Identity = 66/149 (44.30%), Postives = 99/149 (66.44%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            K+R  M+  G KK AA+S +E+   I  F+  D+ +P  K +Y+K++ +  +I+  GY+PD     HDVE E++E  L++HSEKLA+AFG++   P   I+V KNLR C+DCH+  +F+S +   +II+RD NRFHHF  G CSC ++W
Sbjct:  436 KVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584          

HSP 2 Score: 28.4906 bits (62), Expect = 3.918e-37
Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = -3
Query:  642 YFVLMSNIYAASNKW 686
            Y VL+SNIYAA+ KW
Sbjct:  417 YHVLLSNIYAAAGKW 431          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.082e-37
Identity = 69/162 (42.59%), Postives = 102/162 (62.96%), Query Frame = -2
Query:  184 CIKQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDE----DREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 657
            C  +   S ++R  MK + L K    S IE G  I  F+  D  +P   ++Y +++ +  EIK  GY+PD    LH +E+E    ++E +L  HSEK+AVAFG+++ +    ++V KNLRVC DCH+A ++IS +  R+I++RD NRFHHF+ G CSCNDYW
Sbjct:  689 CAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850          

HSP 2 Score: 25.0238 bits (53), Expect = 5.082e-37
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = -3
Query:  636 FVLMSNIYAASNKWRE 683
            ++ +SNIYA + KW E
Sbjct:  680 YIQLSNIYACAGKWEE 695          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP419_ARATH (Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.093e-37
Identity = 73/150 (48.67%), Postives = 100/150 (66.67%), Query Frame = -2
Query:  184 KLREDMKNKGL-KKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            KLR  MK  G+ KKP +  V+  GK  + F + D+  P+   +Y+K+E +  ++K  GY PD   ALHDVEDE +E ML YHSE+LA+AFG++N    + + V KNLRVC DCH+  + IS +  R+I++RD  RFHHF+ GTCSC DYW
Sbjct:  551 KLRVKMKKNGIMKKPGSSWVVIRGKKHE-FFSGDQ--PHCSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGDYW 697          

HSP 2 Score: 26.1794 bits (56), Expect = 5.093e-37
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = -3
Query:  633 FVLMSNIYAASNKWREV 683
            +VL+SNIYA++ +W  V
Sbjct:  533 YVLLSNIYASAGRWSNV 549          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 5.102e-37
Identity = 65/149 (43.62%), Postives = 97/149 (65.10%), Query Frame = -2
Query:  184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALH-DVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627
            LR+ MK++   K    S IE    +  F + D V     ++++ ++ M  E+K++GY+PD S  +H ++ D+++E  L YHSEKLA+ FG++N  P   I+V KNLRVC DCH+A + IS I+ RK+++RD  RFHHFE G CSC D+W
Sbjct:  455 LRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603          

HSP 2 Score: 31.9574 bits (71), Expect = 5.102e-37
Identity = 14/31 (45.16%), Postives = 20/31 (64.52%), Query Frame = -3
Query:  603 HTGYFVLMSNIYAASNKWREVGS*EKI*KIR 695
            H G +V++SN+YA + KW  V S  K+ K R
Sbjct:  432 HGGDYVILSNLYARNKKWEYVDSLRKVMKDR 462          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP312_ARATH (Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.645e-37
Identity = 68/153 (44.44%), Postives = 102/153 (66.67%), Query Frame = -2
Query:  184 ARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 642
            A +  +RE++K  G+KK A +S I     +  F   DR +   KE+   +  +  E++ AGY PDL  +L+D+E+E++   +++HSEKLA+AFG+++L     I++TKNLR+C DCHS F+F+S   +R+IIVRD NRFH F+ G CSC DYW
Sbjct:  532 AEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684          

HSP 2 Score: 25.0238 bits (53), Expect = 8.645e-37
Identity = 9/22 (40.91%), Postives = 15/22 (68.18%), Query Frame = -3
Query:  627 TGYFVLMSNIYAASNKWREVGS 692
            +G  VL+SN +AA+ +W E  +
Sbjct:  515 SGNHVLLSNTFAAAGRWAEANT 536          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 8.659e-37
Identity = 63/149 (42.28%), Postives = 97/149 (65.10%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            K+R+ M   G+KK    S++E G  +  F   D+ +P    +Y K++ M   ++  GY+P +S    DVE+E++E+ + YHSEK+A+AF +++    + I V KNLRVC DCH A + +S +Y R+I+VRD +RFHHF+ G+CSC DYW
Sbjct:  447 KIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595          

HSP 2 Score: 30.0314 bits (66), Expect = 8.659e-37
Identity = 10/21 (47.62%), Postives = 17/21 (80.95%), Query Frame = -3
Query:  633 HTGYFVLMSNIYAASNKWREV 695
            H+G +VL+SN+YA+  +W +V
Sbjct:  425 HSGDYVLLSNMYASEQRWSDV 445          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.405e-36
Identity = 68/149 (45.64%), Postives = 99/149 (66.44%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            ++R  MKN+GL KP  FS++E   ++  F   D  +P  +++Y+ +  +  ++  AGY+ + S   HDV++E++E  L  HSEKLA+AFGIMN  P + + V KNLRVC+DCH+  + IS I  R+ +VRDA RFHHF+ G CSC DYW
Sbjct:  511 RVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP198_ARATH (Pentatricopeptide repeat-containing protein At2g41080 OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.448e-36
Identity = 73/169 (43.20%), Postives = 107/169 (63.31%), Query Frame = -2
Query:  184 WIFCANVKYIRCIKQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 690
            ++  ANV      K+     ++R+ M++K +KK A  S  E+  ++  F   DR     KE+Y  ++ + +E+K+ GY PD +  LHD+++E++E  L  HSEKLAVAF +M L   A I++ KNLRVC+DCH AF++IS I  R+I +RD +RFHHF  G CSC DYW
Sbjct:  484 YVLLANVH--ASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650          
The following BLAST results are available for this feature:
BLAST of FC868864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PPR21_ARATH1.042e-3745.64Pentatricopeptide repeat-containing protein At1g08... [more]
PP390_ARATH3.901e-3745.64Pentatricopeptide repeat-containing protein At5g16... [more]
PP140_ARATH3.918e-3744.30Pentatricopeptide repeat-containing protein At2g01... [more]
PP272_ARATH5.082e-3742.59Pentatricopeptide repeat-containing protein At3g49... [more]
PP419_ARATH5.093e-3748.67Pentatricopeptide repeat-containing protein At5g46... [more]
PP145_ARATH5.102e-3743.62Pentatricopeptide repeat-containing protein At2g02... [more]
PP312_ARATH8.645e-3744.44Pentatricopeptide repeat-containing protein At4g14... [more]
PP330_ARATH8.659e-3742.28Pentatricopeptide repeat-containing protein At4g21... [more]
PP258_ARATH3.405e-3645.64Pentatricopeptide repeat-containing protein At3g26... [more]
PP198_ARATH4.448e-3643.20Pentatricopeptide repeat-containing protein At2g41... [more]

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Properties
Property NameValue
Genbank descriptionC31005G06EF AbioticL1 Citrus clementina cDNA clone C31005G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868864 ID=FC868864; Name=FC868864; organism=Citrus clementina; type=EST; length=700bp
ACTAAATTAACTTTTTTGGTTAGTCGTTACAATGAAAACATCCGGTACTT
TTATACTTTGTTGTTTCATTTCACATCGTTTCTCTATGGGCGTGCCACAA
TTGGGCTAAAATGATTAGGTTGAATTCTTACAATGTTTGGCTTTGAGGTT
CTGGGTATGTAGGGGCTTAGCTGGGATGGCTTACCAATAATCGTTGCATG
AGCAAGTGCCACCTTCAAAATGATGGAACCGATTTGCATCTCTAACAATG
ATCTTCCTTCGATAAATATATGAGATAAACCTGAAGGCTGAGTGGCAATC
ATTGCAAACACGAAGATTTTTTGTTACTTGAATTACTGCTTCGGGGGTAA
GATTCATAATTCCAAAAGCCACAGCCAGTTTCTCACTGTGGTAATTCAGC
ATGTGTTCCCTGTCTTCGTCTTCCACATCATGTAGAGCGCATGATAGGTC
CGGCATGTATCCTGCCATCTTTATCTCAACTGCCATGCTCTCTACTTTCT
TGTAAACTTCTTTCCAGTATGGATTTACTCGGTCAGCTGTGTGGAAGCCT
TGAATGTCTTTACCATATTCAATGACGCTGAAAGCAGCAGGTTTCTTCAA
CCCCTTATTTTTCATATCTTCTCTCAGCTTCCCACTTCTCGCCATTTGTT
TGATGCAGCGTATATATTTGACATTAGCACAAAATATCCAGTATGTTCAG
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