FC868864

Overview
NameFC868864
Unique NameFC868864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9411 contig Ccv1_Contig9411:1..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 7.157e-36
Identity = 63/148 (42.57%), Postives = 96/148 (64.86%), Query Frame = -2
Query:  184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627
            +R  M++ GLKK    S I+    +      D+ +P   ++ +K++ ++ E++ +G+ P+L  ALHDVE++++E ML  HSEKLAV FG++N      +QV KNLR+C DCH+  +FIS    R+I +RD NRFHHF+ G CSC D+W
Sbjct:  613 IRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760          

HSP 2 Score: 32.3426 bits (72), Expect = 7.157e-36
Identity = 14/24 (58.33%), Postives = 17/24 (70.83%), Query Frame = -3
Query:  627 EHTGYFVLMSNIYAASNKWREVGS 698
            E+ G +VL+SNIYAA   W EV S
Sbjct:  589 ENPGTYVLLSNIYAAKGMWTEVDS 612          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.216e-35
Identity = 68/151 (45.03%), Postives = 98/151 (64.90%), Query Frame = -2
Query:  184 SGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 636
            + ++R+ M  KG+KK   +S IE    +  F   D+ +P   ++Y K+E +  E+++ G++P       DVE+E++E +L YHSEKLAVA G+++     VI+V KNLRVC DCH   + IS I RR+I+VRD NRFH F  G+CSCNDYW
Sbjct:  535 AAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685          

HSP 2 Score: 23.8682 bits (50), Expect = 1.216e-35
Identity = 8/20 (40.00%), Postives = 13/20 (65.00%), Query Frame = -3
Query:  636 HTGYFVLMSNIYAASNKWRE 695
            + G +V +SNIY+   +W E
Sbjct:  515 NAGNYVQLSNIYSVGGRWDE 534          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.218e-35
Identity = 66/149 (44.30%), Postives = 102/149 (68.46%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            + R ++  KGLK+   FS++E       F + DR +P  KE+YK +  M  ++K  GY PDL+  L +V++E+++  L  HS+K+A+AFG++   P ++I++ +NLR+C+DCH+  + IS IY R+I+VRD NRFH F+GGTCSC DYW
Sbjct:  458 RTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606          

HSP 2 Score: 21.9422 bits (45), Expect = 1.218e-35
Identity = 7/19 (36.84%), Postives = 13/19 (68.42%), Query Frame = -3
Query:  633 GYFVLMSNIYAASNKWREV 689
            G ++L+SN+Y+    W +V
Sbjct:  438 GDYLLISNLYSQGQMWDDV 456          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP206_ARATH (Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.925e-35
Identity = 63/148 (42.57%), Postives = 93/148 (62.84%), Query Frame = -2
Query:  184 LREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 627
            +++ M+ +G+KK  A+S +E    I  F + D+ +P   E+ +K+  +  EI+  GY PD S  + DV+++ +   L YHSE+LAVAF +++      I V KNLR C DCH+A + IS I +R+I VRD +RFHHF  G CSC DYW
Sbjct:  678 VKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825          

HSP 2 Score: 28.4906 bits (62), Expect = 5.925e-35
Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = -3
Query:  600 FVLMSNIYAASNKWREVGS*EKI*KIRG 683
            +V MSNIYAA+ +W +V   +K  + RG
Sbjct:  659 YVSMSNIYAAAGEWEKVRDVKKAMRERG 686          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP406_ARATH (Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.422e-35
Identity = 70/149 (46.98%), Postives = 97/149 (65.10%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            K+R  M N+G+KK    S I        F   D  +P    +Y KV+ +  +IK  GY PD++ A HDV++E RE  L+YHSEKLAVA+G++    ++ + VTKN+R+C+DCHSA + IS I +R I++RD+NRFHHF  G CSC DYW
Sbjct:  562 KVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVKEVMSKIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNRFHHFLDGQCSCCDYW 710          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP353_ARATH (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.733e-35
Identity = 70/150 (46.67%), Postives = 92/150 (61.33%), Query Frame = -2
Query:  184 GKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 633
            GK+R+ M+  G+ K    S  E  +    F  AD  +P + ++ + +  +  ++K  GY+P  S  LHDVEDE +E  L YHSEKLAVAF I++      I+V KNLR C DCH A +FIS I +RKI VRD+ RFH FE G CSC DYW
Sbjct:  542 GKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691          

HSP 2 Score: 29.261 bits (64), Expect = 7.733e-35
Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = -3
Query:  618 FVLMSNIYAASNKWREVGS*EK 683
            +V M+NIYAA+ KW E G   K
Sbjct:  525 YVTMANIYAAAGKWEEEGKMRK 546          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.388e-35
Identity = 70/170 (41.18%), Postives = 105/170 (61.76%), Query Frame = -2
Query:  184 YWIFCANVKYIRCIKQMARSGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 693
            Y +  AN+   R      + G++R  M  +GL+K    S++E   ++  F +    +P  K++Y  +E +   IK AGY+PD +  L  VE++ +E +L+ HSEKLA++FG++N T    I V KNLRVC DCH+A ++IS +  R+I+VRD  RFHHF+ G CSC DYW
Sbjct:  643 YHVLLANI--YRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP373_ARATH (Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.003e-34
Identity = 68/150 (45.33%), Postives = 102/150 (68.00%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAV-IQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            K R+ MK+  +KK A +S +     +  F   D+ +P    +YKK++ +  +++ AGY+P    AL+D+E E++E +L+YHSEKLAVAF +       + I++ KNLRVC DCHSAF++IS I  R+II+RD+NRFHHF+ G CSC+D+W
Sbjct:  846 KARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995          

HSP 2 Score: 24.6386 bits (52), Expect = 1.003e-34
Identity = 8/22 (36.36%), Postives = 15/22 (68.18%), Query Frame = -3
Query:  633 EHTGYFVLMSNIYAASNKWREV 698
            E+   +VL+ N+YAA  +W ++
Sbjct:  823 ENAVNYVLLGNMYAAGGRWEDL 844          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.008e-34
Identity = 63/149 (42.28%), Postives = 101/149 (67.79%), Query Frame = -2
Query:  184 KLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 630
            ++R  MK K ++K    S+I+    +  F   D  +P  KE+   +  ++ ++++AGY P  +  L ++E+ED+E++L+YHSEK+A AFG+++ +P   I++ KNLR+C DCHS+ + IS +Y+RKI VRD  RFHHF+ G+CSC DYW
Sbjct:  498 EMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646          

HSP 2 Score: 25.7942 bits (55), Expect = 1.008e-34
Identity = 9/20 (45.00%), Postives = 14/20 (70.00%), Query Frame = -3
Query:  633 TGYFVLMSNIYAASNKWREV 692
            +G +V +SN+YA+   W EV
Sbjct:  477 SGAYVALSNMYASQGNWSEV 496          
BLAST of FC868864 vs. ExPASy Swiss-Prot
Match: PP307_ARATH (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.305e-34
Identity = 64/147 (43.54%), Postives = 93/147 (63.27%), Query Frame = -2
Query:  184 REDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLTPEAVIQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 624
            R+ MK KG+KK    S IE    I  F+  D+ +P   E+++  + +       GY+ D    L++++ E ++ ++  HSEKLA++FG+++L     I V KNLRVCNDCH+  +F+S +  R+IIVRDA RFHHFEGG CSC DYW
Sbjct:  918 RQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064          

HSP 2 Score: 27.335 bits (59), Expect = 1.305e-34
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = -3
Query:  642 EHTGYFVLMSNIYAASNKW 698
            E +  +VL+SN+YA S KW
Sbjct:  893 EDSATYVLLSNLYAVSKKW 911          
The following BLAST results are available for this feature:
BLAST of FC868864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PPR53_ARATH7.157e-3642.57Pentatricopeptide repeat-containing protein At1g20... [more]
PP219_ARATH1.216e-3545.03Putative pentatricopeptide repeat-containing prote... [more]
PPR68_ARATH1.218e-3544.30Pentatricopeptide repeat-containing protein At1g31... [more]
PP206_ARATH5.925e-3542.57Putative pentatricopeptide repeat-containing prote... [more]
PP406_ARATH6.422e-3546.98Pentatricopeptide repeat-containing protein At5g39... [more]
PP353_ARATH7.733e-3546.67Pentatricopeptide repeat-containing protein At4g37... [more]
PPR32_ARATH8.388e-3541.18Pentatricopeptide repeat-containing protein At1g11... [more]
PP373_ARATH1.003e-3445.33Putative pentatricopeptide repeat-containing prote... [more]
PP425_ARATH1.008e-3442.28Pentatricopeptide repeat-containing protein At5g48... [more]
PP307_ARATH1.305e-3443.54Pentatricopeptide repeat-containing protein At4g13... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31005G06EF AbioticL1 Citrus clementina cDNA clone C31005G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868864 ID=FC868864; Name=FC868864; organism=Citrus clementina; type=EST; length=700bp
ACTAAATTAACTTTTTTGGTTAGTCGTTACAATGAAAACATCCGGTACTT
TTATACTTTGTTGTTTCATTTCACATCGTTTCTCTATGGGCGTGCCACAA
TTGGGCTAAAATGATTAGGTTGAATTCTTACAATGTTTGGCTTTGAGGTT
CTGGGTATGTAGGGGCTTAGCTGGGATGGCTTACCAATAATCGTTGCATG
AGCAAGTGCCACCTTCAAAATGATGGAACCGATTTGCATCTCTAACAATG
ATCTTCCTTCGATAAATATATGAGATAAACCTGAAGGCTGAGTGGCAATC
ATTGCAAACACGAAGATTTTTTGTTACTTGAATTACTGCTTCGGGGGTAA
GATTCATAATTCCAAAAGCCACAGCCAGTTTCTCACTGTGGTAATTCAGC
ATGTGTTCCCTGTCTTCGTCTTCCACATCATGTAGAGCGCATGATAGGTC
CGGCATGTATCCTGCCATCTTTATCTCAACTGCCATGCTCTCTACTTTCT
TGTAAACTTCTTTCCAGTATGGATTTACTCGGTCAGCTGTGTGGAAGCCT
TGAATGTCTTTACCATATTCAATGACGCTGAAAGCAGCAGGTTTCTTCAA
CCCCTTATTTTTCATATCTTCTCTCAGCTTCCCACTTCTCGCCATTTGTT
TGATGCAGCGTATATATTTGACATTAGCACAAAATATCCAGTATGTTCAG
back to top